Wall clock time and date at job start Tue Mar 31 2020 13:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14561 * 9 8 7 11 11 O 1.21583 * 119.99858 * 354.37123 * 10 9 8 12 12 N 1.34773 * 120.00127 * 174.09249 * 10 9 8 13 13 C 1.46495 * 120.00055 * 180.27062 * 12 10 9 14 14 C 1.50706 * 109.47093 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99588 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00262 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99586 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46910 * 89.99894 * 18 16 14 20 20 H 1.48501 * 109.47038 * 209.99921 * 18 16 14 21 21 H 1.48497 * 109.47025 * 330.00030 * 18 16 14 22 22 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 23 23 N 1.39958 * 120.02874 * 180.29406 * 22 8 7 24 24 C 1.46901 * 111.00096 * 119.99466 * 23 22 8 25 25 C 1.46895 * 111.00318 * 243.95653 * 23 22 8 26 26 C 1.38257 * 119.94971 * 0.27329 * 22 8 7 27 27 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 28 28 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 30 30 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 32 32 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 33 33 H 0.97003 * 119.99977 * 0.28064 * 12 10 9 34 34 H 1.08999 * 109.47488 * 300.00398 * 13 12 10 35 35 H 1.09007 * 109.46667 * 60.00641 * 13 12 10 36 36 H 0.97005 * 119.99777 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46648 * 63.95757 * 24 23 22 38 38 H 1.08999 * 109.47476 * 183.95459 * 24 23 22 39 39 H 1.09000 * 109.47434 * 303.95865 * 24 23 22 40 40 H 1.08999 * 109.47763 * 56.04143 * 25 23 22 41 41 H 1.09002 * 109.47450 * 176.04788 * 25 23 22 42 42 H 1.09002 * 109.47051 * 296.04397 * 25 23 22 43 43 H 1.07996 * 120.08072 * 179.97438 * 26 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4849 11 8 7.8696 -0.4851 1.0158 12 7 9.7713 0.4680 0.3770 13 6 10.5587 -0.6514 0.8995 14 6 12.0232 -0.3928 0.6552 15 1 12.3360 0.5148 0.1607 16 6 12.9634 -1.3150 1.0632 17 7 12.5823 -2.4205 1.6650 18 14 14.7787 -0.9941 0.7611 19 1 15.3524 -0.2659 1.9212 20 1 15.4880 -2.2873 0.5884 21 1 14.9388 -0.1740 -0.4665 22 6 5.5531 2.5900 -0.0007 23 7 6.1937 3.8343 -0.0011 24 6 5.8247 4.6160 -1.1889 25 6 5.8998 4.5783 1.2309 26 6 4.1722 2.5228 -0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8089 -0.8563 -0.0006 31 1 6.2615 -0.7280 -0.0109 32 1 8.1505 2.2693 -0.3503 33 1 10.2169 1.2184 -0.0466 34 1 10.3815 -0.7518 1.9702 35 1 10.2626 -1.5709 0.3943 36 1 13.2440 -3.0691 1.9523 37 1 4.7578 4.8379 -1.1607 38 1 6.3894 5.5482 -1.2003 39 1 6.0528 4.0420 -2.0870 40 1 6.1826 3.9768 2.0949 41 1 6.4651 5.5102 1.2363 42 1 4.8335 4.7999 1.2759 43 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489081204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:43 Heat of formation + Delta-G solvation = -93.066746 kcal Electronic energy + Delta-G solvation = -26539.683170 eV Core-core repulsion = 22584.731378 eV Total energy + Delta-G solvation = -3954.951792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09919 -41.36293 -40.19809 -37.63563 -37.45542 -36.31849 -35.78210 -34.37306 -31.47604 -31.09169 -29.24840 -28.49801 -28.38614 -25.67511 -25.45986 -24.23008 -22.97716 -21.91542 -21.58107 -19.85547 -19.05337 -18.89016 -18.05496 -17.94364 -17.40212 -16.81698 -16.75860 -16.58483 -16.26728 -16.00376 -15.81574 -15.23583 -14.91011 -14.75458 -14.66508 -14.46823 -14.15932 -14.02880 -13.84170 -13.56676 -13.29588 -13.10930 -12.94837 -12.88513 -12.70466 -12.62982 -12.44065 -12.19664 -11.83141 -11.78770 -11.65863 -11.45962 -11.10169 -10.78721 -9.98913 -9.92588 -9.64226 -9.10335 -8.26909 -6.42654 -0.44659 0.17365 1.31802 1.45508 1.47883 1.57710 1.63775 1.69390 2.09464 2.40448 2.67313 2.77907 3.08757 3.34212 3.67839 3.74349 4.00017 4.11359 4.20768 4.29944 4.33763 4.36642 4.41087 4.57145 4.64802 4.69887 4.79232 4.92679 4.99201 5.00694 5.02678 5.11649 5.17785 5.24865 5.28617 5.35261 5.47747 5.62480 5.68843 5.84484 5.86332 6.14854 6.22654 6.62676 6.67927 7.12342 7.26858 7.54692 8.85099 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.002635 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.571256 B =10624.909886 C =11868.448994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.518 3.482 4 O -0.538 6.538 5 C -0.162 4.162 6 C -0.028 4.028 7 C -0.162 4.162 8 C 0.233 3.767 9 N -0.656 5.656 10 C 0.692 3.308 11 O -0.616 6.616 12 N -0.712 5.712 13 C 0.285 3.715 14 C -0.555 4.555 15 H 0.084 0.916 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.256 1.256 22 C 0.037 3.963 23 N -0.511 5.511 24 C 0.024 3.976 25 C 0.028 3.972 26 C -0.052 4.052 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.427 0.573 33 H 0.407 0.593 34 H -0.010 1.010 35 H -0.007 1.007 36 H 0.269 0.731 37 H 0.036 0.964 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.061 13.351 -6.493 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.366 3.634 4 O -0.430 6.430 5 C -0.165 4.165 6 C -0.047 4.047 7 C -0.184 4.184 8 C 0.132 3.868 9 N -0.301 5.301 10 C 0.392 3.608 11 O -0.497 6.497 12 N -0.365 5.365 13 C 0.162 3.838 14 C -0.593 4.593 15 H 0.102 0.898 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.806 3.194 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.180 1.180 22 C -0.061 4.061 23 N -0.233 5.233 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.073 4.073 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.082 0.918 30 H 0.173 0.827 31 H 0.156 0.844 32 H 0.266 0.734 33 H 0.243 0.757 34 H 0.008 0.992 35 H 0.011 0.989 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.039 12.543 -5.963 23.566 hybrid contribution 0.184 0.464 -0.060 0.503 sum -18.855 13.006 -6.023 23.684 Atomic orbital electron populations 1.23600 0.74159 1.05908 1.02730 1.86563 1.25380 1.31703 1.83809 1.21139 0.89065 0.81500 0.71726 1.90797 1.67349 1.36786 1.48049 1.18921 0.88945 0.94818 1.13865 1.21423 0.92364 0.98612 0.92285 1.21406 0.95051 0.97732 1.04181 1.17881 0.82079 0.93133 0.93681 1.42391 1.04116 1.20409 1.63221 1.16235 0.82507 0.82687 0.79354 1.90840 1.70944 1.37163 1.50720 1.45371 1.03570 1.25271 1.62247 1.18500 0.89555 0.83534 0.92237 1.21591 0.90583 1.06771 1.40306 0.89785 1.26005 1.04963 0.94291 0.94147 1.70127 1.36417 1.10383 1.39844 0.85184 0.77340 0.77663 0.79192 1.19729 1.21071 1.17967 1.18202 0.89717 0.90369 1.07769 1.59585 1.57363 1.01432 1.04891 1.22591 0.99843 0.98571 0.91247 1.22508 1.00218 0.98816 0.90326 1.21476 0.93711 0.97228 0.94849 0.91583 0.84910 0.91816 0.82726 0.84356 0.73367 0.75695 0.99153 0.98860 0.92247 0.94528 0.88732 0.91127 0.92474 0.88653 0.94366 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.36 -7.55 9.80 -56.70 -0.56 -8.11 16 3 C 0.52 12.85 7.89 70.25 0.55 13.40 16 4 O -0.54 -15.16 16.13 19.81 0.32 -14.84 16 5 C -0.16 -4.02 5.87 -20.10 -0.12 -4.14 16 6 C -0.03 -0.71 9.60 22.53 0.22 -0.50 16 7 C -0.16 -4.96 8.69 22.32 0.19 -4.77 16 8 C 0.23 6.71 6.45 38.42 0.25 6.96 16 9 N -0.66 -19.49 5.26 -316.73 -1.67 -21.16 16 10 C 0.69 27.42 8.36 179.06 1.50 28.91 16 11 O -0.62 -29.36 13.49 -3.98 -0.05 -29.41 16 12 N -0.71 -29.12 5.55 -482.30 -2.68 -31.80 16 13 C 0.28 15.10 5.43 85.64 0.46 15.56 16 14 C -0.55 -29.26 9.28 25.60 0.24 -29.02 16 15 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 16 C 0.01 0.31 5.46 84.66 0.46 0.78 16 17 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 18 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C 0.04 0.87 4.73 38.20 0.18 1.05 16 23 N -0.51 -9.74 4.30 -744.65 -3.20 -12.94 16 24 C 0.02 0.34 9.28 127.69 1.19 1.52 16 25 C 0.03 0.47 9.33 127.69 1.19 1.66 16 26 C -0.05 -1.20 8.19 22.65 0.19 -1.02 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.16 3.38 7.60 -2.91 -0.02 3.36 16 31 H 0.14 5.03 5.76 -2.91 -0.02 5.01 16 32 H 0.43 10.19 8.27 -92.71 -0.77 9.43 16 33 H 0.41 13.67 8.34 -92.71 -0.77 12.89 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 36 H 0.27 14.85 8.31 -92.70 -0.77 14.07 16 37 H 0.04 0.50 7.26 -2.39 -0.02 0.48 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 40 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.04 0.60 7.47 -2.39 -0.02 0.58 16 43 H 0.14 3.08 6.65 -2.91 -0.02 3.06 16 Total: -1.00 -71.26 368.30 1.69 -69.57 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.48 Total: 27.84 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.70 Total: 31.99 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -7.26 Total: -120.50 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.29 Total: -52.35 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -71.26 1.69 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489081204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.500 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds