Wall clock time and date at job start Tue Mar 31 2020 13:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 117.00223 * 2 1 4 4 O 1.21511 * 119.99764 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99985 * 0.02562 * 5 3 2 7 7 C 1.46498 * 120.00098 * 180.02562 * 5 3 2 8 8 C 1.53001 * 109.47150 * 269.99916 * 7 5 3 9 9 C 1.53002 * 109.46984 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46859 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99989 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99986 * 180.02562 * 10 9 8 13 13 C 1.39467 * 120.00029 * 185.07695 * 12 10 9 14 14 C 1.38600 * 119.58131 * 185.36574 * 13 12 10 15 15 C 1.40804 * 118.79561 * 179.70583 * 14 13 12 16 16 C 1.41544 * 120.99645 * 180.25665 * 15 14 13 17 17 H 1.07989 * 120.00462 * 153.75198 * 16 15 14 18 18 C 1.40038 * 119.99830 * 333.74401 * 16 15 14 19 19 N 1.30743 * 119.99889 * 350.16752 * 18 16 15 20 20 Si 1.86793 * 120.00008 * 170.15962 * 18 16 15 21 21 H 1.48502 * 109.47458 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47377 * 120.00501 * 20 18 16 23 23 H 1.48506 * 109.47201 * 240.00387 * 20 18 16 24 24 C 1.41173 * 118.01192 * 0.26912 * 15 14 13 25 25 C 1.37595 * 119.00940 * 0.02562 * 24 15 14 26 26 N 1.32078 * 121.11023 * 0.02562 * 25 24 15 27 27 H 1.09001 * 109.47159 * 59.99804 * 1 2 3 28 28 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46699 * 299.99457 * 1 2 3 30 30 H 1.08997 * 109.47222 * 269.99768 * 6 5 3 31 31 H 1.08993 * 109.47273 * 30.00313 * 6 5 3 32 32 H 1.09000 * 109.46892 * 150.00297 * 6 5 3 33 33 H 1.09004 * 109.47638 * 149.99568 * 7 5 3 34 34 H 1.09008 * 109.46903 * 29.99706 * 7 5 3 35 35 H 1.09000 * 109.46910 * 60.00249 * 8 7 5 36 36 H 1.08998 * 109.47143 * 299.99859 * 8 7 5 37 37 H 1.08993 * 109.47066 * 60.00140 * 9 8 7 38 38 H 1.08998 * 109.47306 * 300.00054 * 9 8 7 39 39 H 0.97002 * 120.00068 * 5.07851 * 12 10 9 40 40 H 1.08003 * 120.59744 * 359.97086 * 14 13 12 41 41 H 0.97004 * 119.99893 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.49570 * 179.97438 * 24 15 14 43 43 H 1.07998 * 119.44118 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0017 7 6 4.0743 2.5754 0.0000 8 6 4.3052 3.0308 -1.4423 9 6 4.9993 4.3943 -1.4416 10 6 5.2262 4.8431 -2.8623 11 8 4.8685 4.1412 -3.7844 12 7 5.8276 6.0239 -3.1081 13 6 5.9428 6.4885 -4.4180 14 6 6.6596 7.6471 -4.6725 15 6 6.7706 8.0978 -6.0019 16 6 7.4960 9.2721 -6.3153 17 1 7.9353 9.3902 -7.2947 18 6 7.6439 10.2809 -5.3553 19 7 6.9581 10.2307 -4.2433 20 14 8.8211 11.6980 -5.6635 21 1 9.4713 11.5227 -6.9870 22 1 8.0693 12.9785 -5.6477 23 1 9.8584 11.7200 -4.6009 24 6 6.1364 7.3436 -7.0128 25 6 5.4412 6.2091 -6.6621 26 7 5.3600 5.8205 -5.4024 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 4.4054 -0.2639 1.0257 31 1 3.6584 -0.7476 -0.5158 32 1 5.1511 0.2218 -0.5157 33 1 5.0324 2.4949 0.5135 34 1 3.4464 3.3029 0.5146 35 1 3.3471 3.1115 -1.9556 36 1 4.9331 2.3033 -1.9568 37 1 5.9574 4.3140 -0.9281 38 1 4.3712 5.1215 -0.9272 39 1 6.1804 6.5506 -2.3739 40 1 7.1282 8.1919 -3.8663 41 1 7.0609 10.9292 -3.5782 42 1 6.1953 7.6529 -8.0458 43 1 4.9530 5.6271 -7.4298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493311700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:19 Heat of formation + Delta-G solvation = -79.940259 kcal Electronic energy + Delta-G solvation = -25921.990274 eV Core-core repulsion = 21967.607690 eV Total energy + Delta-G solvation = -3954.382585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71385 -39.59010 -37.94395 -37.32306 -35.89751 -34.35004 -33.69648 -33.24811 -30.53256 -29.10685 -28.11422 -27.65423 -26.05329 -25.91521 -23.00737 -21.94162 -21.14868 -20.55584 -19.55998 -18.32275 -17.65327 -17.40887 -16.82953 -16.67963 -15.74584 -15.61375 -15.26766 -15.00949 -14.49689 -14.33215 -14.19462 -13.94645 -13.66430 -13.43816 -13.09861 -12.89903 -12.75856 -12.60973 -12.44830 -12.32550 -12.14906 -11.78053 -11.64946 -11.42680 -11.19233 -10.99852 -10.91737 -10.74655 -10.70488 -10.27912 -10.12037 -9.72970 -9.41184 -9.33578 -9.04884 -7.98696 -7.72471 -7.03231 -6.74687 -4.63241 1.92364 2.56169 2.61244 2.77870 3.01399 3.06839 3.19505 3.48543 3.60030 3.76285 3.85147 4.68629 4.76404 4.83350 4.84464 4.90356 4.97906 5.00256 5.17355 5.22137 5.28010 5.41160 5.46309 5.47151 5.60787 5.68247 5.91443 6.01535 6.11034 6.11630 6.35463 6.59191 6.66357 6.80486 6.95722 7.04166 7.13020 7.39139 7.47631 7.79176 7.95997 8.05650 8.22850 8.43718 8.70612 8.75423 8.91925 9.69195 10.09289 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002118 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.904262 B =13216.810126 C =13625.485939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.646 3.354 4 O -0.567 6.567 5 N -0.597 5.597 6 C 0.083 3.917 7 C 0.130 3.870 8 C -0.120 4.120 9 C -0.137 4.137 10 C 0.497 3.503 11 O -0.484 6.484 12 N -0.660 5.660 13 C 0.335 3.665 14 C -0.239 4.239 15 C 0.140 3.860 16 C -0.454 4.454 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.795 5.795 20 Si 0.915 3.085 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.282 4.282 25 C 0.117 3.883 26 N -0.554 5.554 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.408 0.592 40 H 0.133 0.867 41 H 0.280 0.720 42 H 0.102 0.898 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -14.569 13.164 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.400 3.600 4 O -0.456 6.456 5 N -0.337 5.337 6 C -0.060 4.060 7 C 0.009 3.991 8 C -0.159 4.159 9 C -0.178 4.178 10 C 0.282 3.718 11 O -0.354 6.354 12 N -0.306 5.306 13 C 0.110 3.890 14 C -0.264 4.264 15 C 0.132 3.868 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.739 3.261 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.306 4.306 25 C -0.038 4.038 26 N -0.273 5.273 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.773 -15.498 12.973 20.767 hybrid contribution 1.010 1.893 0.075 2.147 sum -3.762 -13.605 13.048 19.223 Atomic orbital electron populations 1.23195 0.74471 1.03378 1.02843 1.86226 1.24137 1.31170 1.87071 1.18105 0.83300 0.82158 0.76468 1.91019 1.64219 1.34881 1.55442 1.46622 1.02222 1.08599 1.76274 1.21797 0.96302 0.85881 1.02022 1.21598 0.97311 0.82497 0.97687 1.21696 1.02403 0.95767 0.96061 1.21580 1.02567 0.98473 0.95180 1.20625 0.78539 0.81463 0.91153 1.90772 1.46706 1.52218 1.45749 1.43489 1.58409 1.21417 1.07317 1.18234 0.95252 0.91444 0.84066 1.21679 1.08009 0.97249 0.99503 1.17606 0.87833 0.90988 0.90364 1.19613 1.29356 1.00052 0.99516 0.90030 1.25957 0.94621 0.99612 0.94157 1.69752 1.32861 1.32404 1.07162 0.86151 0.80201 0.79969 0.79762 1.18367 1.19893 1.19700 1.21928 1.08072 1.01234 0.99351 1.21758 0.96247 0.93960 0.91795 1.67184 1.26381 1.34100 0.99600 0.91730 0.88027 0.91903 0.92442 0.90459 0.90498 0.89587 0.89303 0.90509 0.90846 0.89038 0.88792 0.75725 0.84925 0.90875 0.87970 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.00 9.39 -40.31 -0.38 -4.38 16 3 C 0.65 8.28 8.40 54.05 0.45 8.74 16 4 O -0.57 -9.07 15.71 -19.28 -0.30 -9.37 16 5 N -0.60 -6.22 2.87 -187.42 -0.54 -6.75 16 6 C 0.08 0.58 10.44 59.85 0.62 1.21 16 7 C 0.13 1.26 5.41 -4.04 -0.02 1.23 16 8 C -0.12 -1.48 4.83 -26.73 -0.13 -1.61 16 9 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 10 C 0.50 9.20 7.78 -10.98 -0.09 9.11 16 11 O -0.48 -11.14 14.28 5.56 0.08 -11.06 16 12 N -0.66 -12.85 5.39 -11.49 -0.06 -12.91 16 13 C 0.33 8.19 7.40 -154.71 -1.15 7.04 16 14 C -0.24 -6.09 8.61 -38.48 -0.33 -6.42 16 15 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 16 C -0.45 -11.70 9.14 -37.65 -0.34 -12.04 16 17 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 18 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 19 N -0.80 -19.55 10.70 55.55 0.59 -18.96 16 20 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.28 -7.00 9.90 -38.70 -0.38 -7.38 16 25 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 26 N -0.55 -14.37 7.89 -12.52 -0.10 -14.47 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.55 7.37 -51.93 -0.38 0.16 16 32 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.09 0.93 7.42 -51.92 -0.39 0.54 16 35 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.41 6.41 8.70 -40.82 -0.36 6.06 16 40 H 0.13 3.34 6.11 -52.48 -0.32 3.02 16 41 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -35.24 370.41 -7.54 -42.78 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.05 Total: 9.54 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.34 Total: 7.06 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.10 Total: -53.09 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.60 Total: -24.81 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.24 -7.54 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493311700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.155 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds