Wall clock time and date at job start Tue Mar 31 2020 13:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 117.00223 * 2 1 4 4 O 1.21511 * 119.99764 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00187 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99985 * 0.02562 * 5 3 2 7 7 C 1.46498 * 120.00098 * 180.02562 * 5 3 2 8 8 C 1.53001 * 109.47150 * 269.99916 * 7 5 3 9 9 C 1.53002 * 109.46984 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46859 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99989 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99986 * 180.02562 * 10 9 8 13 13 C 1.39467 * 120.00029 * 185.07695 * 12 10 9 14 14 C 1.38600 * 119.58131 * 185.36574 * 13 12 10 15 15 C 1.40804 * 118.79561 * 179.70583 * 14 13 12 16 16 C 1.41544 * 120.99645 * 180.25665 * 15 14 13 17 17 H 1.07989 * 120.00462 * 153.75198 * 16 15 14 18 18 C 1.40038 * 119.99830 * 333.74401 * 16 15 14 19 19 N 1.30743 * 119.99889 * 350.16752 * 18 16 15 20 20 Si 1.86793 * 120.00008 * 170.15962 * 18 16 15 21 21 H 1.48502 * 109.47458 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47377 * 120.00501 * 20 18 16 23 23 H 1.48506 * 109.47201 * 240.00387 * 20 18 16 24 24 C 1.41173 * 118.01192 * 0.26912 * 15 14 13 25 25 C 1.37595 * 119.00940 * 0.02562 * 24 15 14 26 26 N 1.32078 * 121.11023 * 0.02562 * 25 24 15 27 27 H 1.09001 * 109.47159 * 59.99804 * 1 2 3 28 28 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46699 * 299.99457 * 1 2 3 30 30 H 1.08997 * 109.47222 * 269.99768 * 6 5 3 31 31 H 1.08993 * 109.47273 * 30.00313 * 6 5 3 32 32 H 1.09000 * 109.46892 * 150.00297 * 6 5 3 33 33 H 1.09004 * 109.47638 * 149.99568 * 7 5 3 34 34 H 1.09008 * 109.46903 * 29.99706 * 7 5 3 35 35 H 1.09000 * 109.46910 * 60.00249 * 8 7 5 36 36 H 1.08998 * 109.47143 * 299.99859 * 8 7 5 37 37 H 1.08993 * 109.47066 * 60.00140 * 9 8 7 38 38 H 1.08998 * 109.47306 * 300.00054 * 9 8 7 39 39 H 0.97002 * 120.00068 * 5.07851 * 12 10 9 40 40 H 1.08003 * 120.59744 * 359.97086 * 14 13 12 41 41 H 0.97004 * 119.99893 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.49570 * 179.97438 * 24 15 14 43 43 H 1.07998 * 119.44118 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0017 7 6 4.0743 2.5754 0.0000 8 6 4.3052 3.0308 -1.4423 9 6 4.9993 4.3943 -1.4416 10 6 5.2262 4.8431 -2.8623 11 8 4.8685 4.1412 -3.7844 12 7 5.8276 6.0239 -3.1081 13 6 5.9428 6.4885 -4.4180 14 6 6.6596 7.6471 -4.6725 15 6 6.7706 8.0978 -6.0019 16 6 7.4960 9.2721 -6.3153 17 1 7.9353 9.3902 -7.2947 18 6 7.6439 10.2809 -5.3553 19 7 6.9581 10.2307 -4.2433 20 14 8.8211 11.6980 -5.6635 21 1 9.4713 11.5227 -6.9870 22 1 8.0693 12.9785 -5.6477 23 1 9.8584 11.7200 -4.6009 24 6 6.1364 7.3436 -7.0128 25 6 5.4412 6.2091 -6.6621 26 7 5.3600 5.8205 -5.4024 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 4.4054 -0.2639 1.0257 31 1 3.6584 -0.7476 -0.5158 32 1 5.1511 0.2218 -0.5157 33 1 5.0324 2.4949 0.5135 34 1 3.4464 3.3029 0.5146 35 1 3.3471 3.1115 -1.9556 36 1 4.9331 2.3033 -1.9568 37 1 5.9574 4.3140 -0.9281 38 1 4.3712 5.1215 -0.9272 39 1 6.1804 6.5506 -2.3739 40 1 7.1282 8.1919 -3.8663 41 1 7.0609 10.9292 -3.5782 42 1 6.1953 7.6529 -8.0458 43 1 4.9530 5.6271 -7.4298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493311700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:19 Heat of formation + Delta-G solvation = -103.271286 kcal Electronic energy + Delta-G solvation = -25923.001984 eV Core-core repulsion = 21967.607690 eV Total energy + Delta-G solvation = -3955.394294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61326 -41.20995 -39.62422 -38.22002 -36.86722 -36.13263 -35.45439 -34.28488 -32.44710 -30.69987 -29.02082 -28.46901 -27.91673 -26.82359 -24.23947 -23.81187 -22.66454 -21.43316 -21.12619 -19.45661 -19.15884 -18.53235 -18.01785 -17.69950 -17.37415 -16.98759 -16.78573 -16.06499 -15.94796 -15.72381 -15.41252 -15.18648 -15.02058 -14.74270 -14.45270 -14.35355 -14.10243 -13.86976 -13.38053 -13.17868 -13.13987 -12.95648 -12.86734 -12.75046 -12.70623 -12.64038 -12.10001 -11.86643 -11.83045 -11.69904 -11.68709 -11.48091 -11.18804 -10.96381 -9.94134 -9.86202 -9.60596 -8.87157 -8.58160 -6.58610 0.74108 0.98941 1.15321 1.41725 1.53827 1.56448 1.66472 1.91902 2.20259 2.22773 2.82614 2.97538 3.63242 3.73531 3.95771 3.97491 4.16551 4.29882 4.32747 4.33628 4.44330 4.47837 4.61912 4.65765 4.67796 4.76914 4.77474 4.86879 4.92145 4.95889 5.03683 5.09839 5.21145 5.24371 5.27847 5.45998 5.47789 5.65873 5.92490 6.15528 6.20533 6.49327 6.63037 6.79038 6.83691 7.15802 7.35583 7.84290 8.29171 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002118 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.904262 B =13216.810126 C =13625.485939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.636 3.364 4 O -0.609 6.609 5 N -0.596 5.596 6 C 0.078 3.922 7 C 0.134 3.866 8 C -0.112 4.112 9 C -0.121 4.121 10 C 0.491 3.509 11 O -0.535 6.535 12 N -0.654 5.654 13 C 0.331 3.669 14 C -0.256 4.256 15 C 0.110 3.890 16 C -0.483 4.483 17 H 0.082 0.918 18 C 0.035 3.965 19 N -0.817 5.817 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.260 1.260 24 C -0.296 4.296 25 C 0.110 3.890 26 N -0.581 5.581 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.425 0.575 40 H 0.131 0.869 41 H 0.292 0.708 42 H 0.115 0.885 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -14.599 15.061 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.390 3.610 4 O -0.501 6.501 5 N -0.335 5.335 6 C -0.063 4.063 7 C 0.013 3.987 8 C -0.151 4.151 9 C -0.161 4.161 10 C 0.279 3.721 11 O -0.408 6.408 12 N -0.301 5.301 13 C 0.105 3.895 14 C -0.281 4.281 15 C 0.102 3.898 16 C -0.514 4.514 17 H 0.100 0.900 18 C -0.181 4.181 19 N -0.443 5.443 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.185 1.185 24 C -0.320 4.320 25 C -0.044 4.044 26 N -0.301 5.301 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.133 0.867 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.357 -15.562 14.914 21.815 hybrid contribution 0.519 1.846 -0.513 1.985 sum -2.838 -13.716 14.400 20.089 Atomic orbital electron populations 1.23473 0.73114 1.05607 1.02293 1.86236 1.25526 1.30076 1.86724 1.18469 0.84131 0.82143 0.76247 1.90981 1.65354 1.36258 1.57508 1.46852 1.01676 1.09998 1.75014 1.22023 0.96265 0.84433 1.03610 1.21653 0.99082 0.82208 0.95742 1.21594 0.99946 0.96009 0.97563 1.21602 1.05330 0.98379 0.90767 1.21813 0.76674 0.80228 0.93395 1.90747 1.48492 1.53519 1.48069 1.43567 1.58440 1.22116 1.06005 1.18528 0.94216 0.91048 0.85748 1.21674 1.09202 0.97995 0.99276 1.18061 0.88537 0.91861 0.91369 1.19888 1.30298 1.00773 1.00394 0.89952 1.26836 0.95807 1.01897 0.93530 1.69781 1.33194 1.33553 1.07780 0.85013 0.77818 0.76222 0.79777 1.18298 1.19186 1.18481 1.22105 1.08488 1.01557 0.99875 1.22193 0.95950 0.94057 0.92205 1.67315 1.27441 1.34924 1.00379 0.92894 0.84376 0.91913 0.90314 0.90771 0.88944 0.85193 0.90075 0.94884 0.91398 0.84351 0.86727 0.73719 0.85104 0.89728 0.86649 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -7.80 9.39 -55.46 -0.52 -8.32 16 3 C 0.64 16.20 8.40 129.79 1.09 17.29 16 4 O -0.61 -19.96 15.71 19.81 0.31 -19.65 16 5 N -0.60 -11.52 2.87 -977.27 -2.81 -14.33 16 6 C 0.08 0.91 10.44 127.77 1.33 2.25 16 7 C 0.13 2.27 5.41 86.38 0.47 2.74 16 8 C -0.11 -2.64 4.83 30.60 0.15 -2.49 16 9 C -0.12 -2.63 5.70 29.85 0.17 -2.46 16 10 C 0.49 17.91 7.78 87.66 0.68 18.60 16 11 O -0.53 -25.10 14.28 -3.03 -0.04 -25.14 16 12 N -0.65 -25.20 5.39 -308.66 -1.66 -26.86 16 13 C 0.33 16.44 7.40 132.76 0.98 17.42 16 14 C -0.26 -13.30 8.61 22.98 0.20 -13.10 16 15 C 0.11 5.96 5.60 -21.12 -0.12 5.84 16 16 C -0.48 -25.17 9.14 23.52 0.21 -24.96 16 17 H 0.08 4.13 7.87 -2.92 -0.02 4.10 16 18 C 0.04 1.69 5.31 85.29 0.45 2.14 16 19 N -0.82 -39.88 10.70 21.84 0.23 -39.65 16 20 Si 0.99 35.95 29.57 68.60 2.03 37.98 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 24 C -0.30 -15.06 9.90 22.84 0.23 -14.84 16 25 C 0.11 5.47 11.15 84.50 0.94 6.42 16 26 N -0.58 -30.80 7.89 -193.53 -1.53 -32.33 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.93 7.37 -2.39 -0.02 0.91 16 32 H 0.09 0.81 8.07 -2.39 -0.02 0.79 16 33 H 0.13 1.11 8.07 -2.38 -0.02 1.09 16 34 H 0.08 1.55 7.42 -2.38 -0.02 1.53 16 35 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.42 12.87 8.70 -92.71 -0.81 12.06 16 40 H 0.13 6.69 6.11 -2.91 -0.02 6.68 16 41 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 42 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 43 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -80.47 370.41 4.23 -76.24 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.23 Total: 35.25 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.99 Total: 16.80 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -5.76 Total: -113.16 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.25 Total: -53.11 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -80.47 4.23 -76.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493311700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.029 kcal (2) G-P(sol) polarization free energy of solvation -80.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds