Wall clock time and date at job start Tue Mar 31 2020 13:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.46658 * 2 1 4 4 C 1.34636 * 116.99615 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00257 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99781 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00029 * 180.02562 * 6 4 3 8 8 C 1.52994 * 109.47360 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47358 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47021 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99659 * 179.97438 * 10 9 8 13 13 C 1.39475 * 120.00058 * 184.87146 * 12 10 9 14 14 C 1.38589 * 119.58120 * 182.94614 * 13 12 10 15 15 C 1.40813 * 118.79406 * 179.70006 * 14 13 12 16 16 C 1.41550 * 120.99641 * 180.25456 * 15 14 13 17 17 H 1.07999 * 120.00002 * 154.03193 * 16 15 14 18 18 C 1.40029 * 119.99998 * 334.03763 * 16 15 14 19 19 N 1.30736 * 120.00307 * 163.02668 * 18 16 15 20 20 Si 1.86806 * 119.99947 * 343.02242 * 18 16 15 21 21 H 1.48496 * 109.47082 * 95.20761 * 20 18 16 22 22 H 1.48502 * 109.47287 * 215.21056 * 20 18 16 23 23 H 1.48504 * 109.46767 * 335.20605 * 20 18 16 24 24 C 1.41170 * 118.00675 * 0.28053 * 15 14 13 25 25 C 1.37586 * 119.01672 * 359.97438 * 24 15 14 26 26 N 1.32082 * 121.10984 * 0.02844 * 25 24 15 27 27 H 1.09002 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47337 * 299.99887 * 1 2 3 29 29 H 1.08998 * 109.47092 * 60.00268 * 1 2 3 30 30 H 1.08996 * 109.47337 * 240.00113 * 2 1 3 31 31 H 1.09007 * 109.47062 * 119.99542 * 2 1 3 32 32 H 0.96995 * 119.99675 * 0.02562 * 6 4 3 33 33 H 1.09004 * 109.47098 * 59.99904 * 7 6 4 34 34 H 1.08998 * 109.47099 * 300.00207 * 7 6 4 35 35 H 1.09004 * 109.47232 * 59.99816 * 8 7 6 36 36 H 1.08998 * 109.47045 * 300.00071 * 8 7 6 37 37 H 1.09004 * 109.46942 * 59.99831 * 9 8 7 38 38 H 1.08998 * 109.47257 * 300.00133 * 9 8 7 39 39 H 0.96997 * 120.00311 * 4.87422 * 12 10 9 40 40 H 1.07995 * 120.60528 * 359.97438 * 14 13 12 41 41 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.48938 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.44565 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5455 0.0005 5 8 4.0889 0.5819 0.0005 6 7 3.8638 2.7910 0.0000 7 6 5.3161 2.9830 0.0001 8 6 5.6326 4.4798 0.0001 9 6 7.1495 4.6804 0.0008 10 6 7.4612 6.1548 0.0002 11 8 6.5591 6.9654 -0.0002 12 7 8.7426 6.5726 0.0011 13 6 9.0324 7.9331 0.1031 14 6 10.3500 8.3583 0.0416 15 6 10.6233 9.7362 0.1400 16 6 11.9512 10.2223 0.0775 17 1 12.1422 11.2295 -0.2623 18 6 13.0174 9.3971 0.4561 19 7 14.2377 9.7000 0.0978 20 14 12.6960 7.8635 1.4731 21 1 12.5761 6.6887 0.5729 22 1 13.8223 7.6507 2.4173 23 1 11.4342 8.0322 2.2378 24 6 9.5332 10.6182 0.3033 25 6 8.2592 10.1016 0.3589 26 7 8.0451 8.8018 0.2627 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.2728 3.5601 -0.0003 33 1 5.7437 2.5208 -0.8897 34 1 5.7436 2.5216 0.8902 35 1 5.2051 4.9417 0.8901 36 1 5.2051 4.9416 -0.8899 37 1 7.5774 4.2185 -0.8890 38 1 7.5766 4.2187 0.8909 39 1 9.4632 5.9272 -0.0692 40 1 11.1523 7.6464 -0.0840 41 1 14.9761 9.1283 0.3598 42 1 9.6969 11.6827 0.3835 43 1 7.4202 10.7701 0.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493955828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:03 Heat of formation + Delta-G solvation = -116.260758 kcal Electronic energy + Delta-G solvation = -25354.169361 eV Core-core repulsion = 21398.211801 eV Total energy + Delta-G solvation = -3955.957560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53412 -41.34733 -39.77164 -38.16808 -36.64426 -36.11244 -35.52217 -33.91652 -33.20070 -32.40337 -30.78843 -28.17623 -27.81374 -24.57407 -24.21176 -23.64449 -22.45823 -22.35307 -21.23420 -19.75068 -19.52059 -18.68448 -17.83716 -17.82536 -17.56674 -17.25684 -16.94371 -16.43487 -16.03180 -15.86047 -15.78447 -15.09958 -15.06519 -14.80508 -14.73828 -14.53489 -14.40931 -13.57985 -13.54587 -13.34311 -13.14905 -12.86001 -12.76333 -12.66433 -12.58531 -12.52616 -12.49394 -11.86781 -11.81767 -11.78287 -11.53861 -11.52645 -11.26201 -10.95308 -10.27016 -10.15444 -9.66363 -9.00354 -8.96127 -6.73688 0.55404 0.77016 1.12745 1.23068 1.39917 1.48785 1.68683 1.85655 2.09132 2.10184 2.67207 3.20515 3.52098 3.54552 3.97328 4.00492 4.02358 4.04043 4.10365 4.29069 4.36099 4.51417 4.55884 4.58978 4.61410 4.68172 4.73926 4.78713 4.79928 4.93285 5.09049 5.11508 5.12551 5.19781 5.29930 5.32376 5.46698 5.54174 5.69380 6.03698 6.19615 6.32820 6.50367 6.53834 6.67315 7.23844 7.26450 7.70925 8.07131 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.001947 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.849259 B =14377.515009 C =15184.199185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 O -0.376 6.376 4 C 0.643 3.357 5 O -0.608 6.608 6 N -0.699 5.699 7 C 0.142 3.858 8 C -0.106 4.106 9 C -0.125 4.125 10 C 0.496 3.504 11 O -0.522 6.522 12 N -0.660 5.660 13 C 0.366 3.634 14 C -0.332 4.332 15 C 0.111 3.889 16 C -0.468 4.468 17 H 0.065 0.935 18 C 0.051 3.949 19 N -0.830 5.830 20 Si 0.971 3.029 21 H -0.241 1.241 22 H -0.278 1.278 23 H -0.260 1.260 24 C -0.288 4.288 25 C 0.129 3.871 26 N -0.574 5.574 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.418 0.582 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.426 0.574 40 H 0.117 0.883 41 H 0.299 0.701 42 H 0.118 0.882 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 -19.664 0.853 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.001 4.001 3 O -0.290 6.290 4 C 0.396 3.604 5 O -0.500 6.500 6 N -0.359 5.359 7 C 0.019 3.981 8 C -0.145 4.145 9 C -0.165 4.165 10 C 0.284 3.716 11 O -0.394 6.394 12 N -0.308 5.308 13 C 0.138 3.862 14 C -0.357 4.357 15 C 0.103 3.897 16 C -0.498 4.498 17 H 0.083 0.917 18 C -0.167 4.167 19 N -0.454 5.454 20 Si 0.794 3.206 21 H -0.166 1.166 22 H -0.205 1.205 23 H -0.185 1.185 24 C -0.312 4.312 25 C -0.023 4.023 26 N -0.294 5.294 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.264 0.736 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.277 -19.979 0.865 27.776 hybrid contribution 1.564 0.464 0.128 1.636 sum -17.713 -19.515 0.993 26.374 Atomic orbital electron populations 1.21852 0.90316 1.04529 1.03686 1.23231 0.96527 0.77623 1.02683 1.86265 1.21295 1.34747 1.86700 1.18291 0.81386 0.84565 0.76130 1.90975 1.60639 1.40893 1.57470 1.44703 1.09046 1.05117 1.77066 1.21377 0.77117 0.96108 1.03453 1.21387 0.94895 0.93947 1.04224 1.21594 0.97794 0.89318 1.07760 1.21711 0.81518 0.93011 0.75379 1.90772 1.45585 1.57238 1.45825 1.43680 1.10109 1.04769 1.72194 1.18291 0.89171 0.85450 0.93335 1.21261 0.94749 0.96776 1.22924 1.17883 0.93690 0.91520 0.86610 1.19531 0.89846 1.00874 1.39520 0.91706 1.26929 0.93880 1.01394 0.94533 1.69648 1.01548 1.38932 1.35321 0.85424 0.78384 0.77890 0.78911 1.16621 1.20491 1.18455 1.22059 0.93614 1.00150 1.15331 1.22359 0.95796 0.90705 0.93436 1.67461 1.33935 1.03290 1.24720 0.87848 0.91326 0.91309 0.91315 0.91332 0.74518 0.90383 0.90492 0.90909 0.90771 0.85423 0.85651 0.73605 0.86553 0.88967 0.86366 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.07 1.02 6.19 71.98 0.45 1.46 16 3 O -0.38 -6.96 10.27 -55.45 -0.57 -7.53 16 4 C 0.64 13.72 8.75 129.79 1.14 14.86 16 5 O -0.61 -16.63 16.13 19.82 0.32 -16.31 16 6 N -0.70 -11.38 5.56 -590.86 -3.29 -14.66 16 7 C 0.14 2.03 5.67 86.38 0.49 2.52 16 8 C -0.11 -1.67 4.62 30.59 0.14 -1.52 16 9 C -0.12 -1.96 5.70 29.85 0.17 -1.79 16 10 C 0.50 14.60 7.78 87.66 0.68 15.28 16 11 O -0.52 -20.25 14.25 -3.02 -0.04 -20.29 16 12 N -0.66 -21.23 5.39 -308.66 -1.66 -22.89 16 13 C 0.37 15.81 7.41 132.75 0.98 16.79 16 14 C -0.33 -15.16 7.01 22.98 0.16 -15.00 16 15 C 0.11 5.58 5.23 -21.11 -0.11 5.47 16 16 C -0.47 -25.09 9.66 23.52 0.23 -24.86 16 17 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 18 C 0.05 2.55 5.45 85.29 0.47 3.01 16 19 N -0.83 -42.48 13.92 21.84 0.30 -42.17 16 20 Si 0.97 39.36 24.42 68.60 1.68 41.03 16 21 H -0.24 -8.60 6.70 99.48 0.67 -7.93 16 22 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -11.20 6.66 99.48 0.66 -10.54 16 24 C -0.29 -13.37 9.90 22.84 0.23 -13.14 16 25 C 0.13 5.64 11.15 84.50 0.94 6.58 16 26 N -0.57 -26.49 7.87 -193.54 -1.52 -28.01 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.42 5.33 8.58 -92.71 -0.80 4.54 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.31 8.10 -2.38 -0.02 1.29 16 36 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.43 10.21 8.69 -92.71 -0.81 9.40 16 40 H 0.12 4.96 4.23 -2.91 -0.01 4.95 16 41 H 0.30 13.58 8.29 -92.71 -0.77 12.81 16 42 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 43 H 0.16 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -74.32 366.53 1.28 -73.04 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.63 Total: 28.54 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.70 Total: 9.26 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -6.17 Total: -107.74 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.29 Total: -44.13 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.68 Total: 41.03 kcal Total: -74.32 1.28 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493955828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.223 kcal (2) G-P(sol) polarization free energy of solvation -74.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds