Wall clock time and date at job start Tue Mar 31 2020 13:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35292 * 117.00189 * 2 1 4 4 N 1.32808 * 120.58453 * 0.26550 * 3 2 1 5 5 C 1.31798 * 121.04100 * 180.26767 * 4 3 2 6 6 N 1.31793 * 122.30036 * 359.71722 * 5 4 3 7 7 C 1.32814 * 121.04327 * 0.02562 * 6 5 4 8 8 O 1.35290 * 120.58154 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00374 * 0.02562 * 8 7 6 10 10 C 1.40636 * 118.82892 * 359.97438 * 7 6 5 11 11 C 1.47219 * 121.02169 * 179.97438 * 10 7 6 12 12 O 1.21623 * 120.00062 * 90.00187 * 11 10 7 13 13 N 1.34777 * 119.99909 * 269.72845 * 11 10 7 14 14 C 1.46931 * 120.63091 * 359.97438 * 13 11 10 15 15 C 1.52760 * 109.00859 * 233.58755 * 14 13 11 16 16 C 1.53035 * 109.38643 * 305.58694 * 15 14 13 17 17 C 1.50690 * 109.45285 * 181.25405 * 16 15 14 18 18 H 1.08000 * 120.00618 * 239.94378 * 17 16 15 19 19 C 1.37886 * 120.00077 * 59.93888 * 17 16 15 20 20 N 1.31516 * 119.99674 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00134 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47055 * 90.00250 * 21 19 17 23 23 H 1.48504 * 109.47221 * 210.00276 * 21 19 17 24 24 H 1.48499 * 109.47429 * 330.00173 * 21 19 17 25 25 C 1.53042 * 109.53348 * 61.23842 * 16 15 14 26 26 C 1.46921 * 120.63272 * 180.27571 * 13 11 10 27 27 H 1.09004 * 109.46517 * 300.00054 * 1 2 3 28 28 H 1.09001 * 109.46755 * 59.99594 * 1 2 3 29 29 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.07995 * 118.84726 * 179.74751 * 5 4 3 31 31 H 1.09004 * 109.47003 * 300.00447 * 9 8 7 32 32 H 1.09004 * 109.47197 * 59.99629 * 9 8 7 33 33 H 1.08994 * 109.47187 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.58729 * 353.42164 * 14 13 11 35 35 H 1.09004 * 109.58544 * 113.84684 * 14 13 11 36 36 H 1.09004 * 109.56227 * 185.55264 * 15 14 13 37 37 H 1.09002 * 109.38627 * 65.52173 * 15 14 13 38 38 H 1.08999 * 109.46035 * 301.22702 * 16 15 14 39 39 H 0.96993 * 120.00018 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.49659 * 178.68178 * 25 16 15 41 41 H 1.09006 * 109.52138 * 58.60795 * 25 16 15 42 42 H 1.08995 * 109.59072 * 246.15177 * 26 13 11 43 43 H 1.09005 * 109.58560 * 6.43527 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 1.3314 2.3266 0.0053 5 6 1.9204 3.5056 0.0001 6 7 3.2316 3.6378 -0.0051 7 6 4.0272 2.5743 -0.0057 8 8 5.3721 2.7208 -0.0115 9 6 5.8792 4.0568 -0.0163 10 6 3.4469 1.2933 -0.0002 11 6 4.2830 0.0816 -0.0013 12 8 4.6330 -0.4166 1.0516 13 7 4.6559 -0.4788 -1.1689 14 6 4.2355 0.1077 -2.4488 15 6 3.5577 -0.9711 -3.2916 16 6 4.4955 -2.1727 -3.4284 17 6 3.8407 -3.2253 -4.2853 18 1 3.6526 -4.2095 -3.8824 19 6 3.4815 -2.9319 -5.5838 20 7 3.7109 -1.7335 -6.0746 21 14 2.6693 -4.2364 -6.6457 22 1 1.1951 -4.1594 -6.4834 23 1 3.0232 -4.0066 -8.0695 24 1 3.1436 -5.5803 -6.2284 25 6 4.7890 -2.7531 -2.0431 26 6 5.4851 -1.6915 -1.1861 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.3070 4.3945 0.0005 31 1 5.5240 4.5771 -0.9058 32 1 5.5314 4.5806 0.8741 33 1 6.9689 4.0318 -0.0202 34 1 3.5332 0.9208 -2.2650 35 1 5.1077 0.4885 -2.9803 36 1 3.3304 -0.5726 -4.2804 37 1 2.6341 -1.2839 -2.8044 38 1 5.4283 -1.8543 -3.8937 39 1 3.4586 -1.5272 -6.9882 40 1 5.4381 -3.6230 -2.1431 41 1 3.8544 -3.0494 -1.5668 42 1 6.4614 -1.4607 -1.6124 43 1 5.6092 -2.0638 -0.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542911128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:57 Heat of formation + Delta-G solvation = -56.003996 kcal Electronic energy + Delta-G solvation = -28483.615381 eV Core-core repulsion = 24530.270750 eV Total energy + Delta-G solvation = -3953.344631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62180 -39.35507 -39.29254 -37.96711 -36.71901 -33.51099 -32.85055 -32.34162 -30.88669 -30.03332 -28.16002 -27.06872 -26.42502 -25.10940 -23.32099 -22.89587 -22.26231 -20.30103 -19.38286 -18.74237 -18.54149 -17.22870 -16.75262 -16.56461 -16.16782 -15.87217 -15.70063 -15.59476 -14.55664 -14.46471 -14.30683 -13.98589 -13.90803 -13.64088 -13.09710 -12.76380 -12.68753 -12.37157 -12.20612 -12.03983 -11.97963 -11.70301 -11.48715 -11.40137 -11.24521 -10.94270 -10.64087 -10.36709 -10.09109 -9.82513 -9.79386 -9.66541 -9.50854 -9.16715 -9.05491 -8.82963 -8.37618 -7.97724 -6.02875 -4.08734 0.64722 1.02628 2.32700 2.80562 3.18915 3.27855 3.34999 3.37861 3.38856 3.59346 3.85592 3.94458 4.40919 4.62427 4.98511 5.03234 5.09217 5.10531 5.21085 5.24061 5.26638 5.35008 5.49350 5.59748 5.66128 5.84146 5.97804 6.11046 6.18318 6.32090 6.48308 6.56481 6.68733 6.81077 6.91134 6.96794 7.06786 7.16910 7.29338 7.66649 7.80071 7.91401 7.93173 8.04066 8.40875 8.53818 8.94751 9.56163 11.02753 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.004228 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.323883 B = 6620.341573 C = 7093.438555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.281 6.281 3 C 0.420 3.580 4 N -0.592 5.592 5 C 0.379 3.621 6 N -0.594 5.594 7 C 0.416 3.584 8 O -0.287 6.287 9 C 0.038 3.962 10 C -0.262 4.262 11 C 0.587 3.413 12 O -0.546 6.546 13 N -0.585 5.585 14 C 0.112 3.888 15 C -0.122 4.122 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.123 4.123 26 C 0.113 3.887 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.208 0.792 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 12.400 10.580 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.183 6.183 3 C 0.235 3.765 4 N -0.326 5.326 5 C 0.092 3.908 6 N -0.328 5.328 7 C 0.231 3.769 8 O -0.189 6.189 9 C -0.057 4.057 10 C -0.272 4.272 11 C 0.372 3.628 12 O -0.424 6.424 13 N -0.316 5.316 14 C -0.010 4.010 15 C -0.160 4.160 16 C 0.031 3.969 17 C -0.548 4.548 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.161 4.161 26 C -0.009 4.009 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.224 0.776 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.503 12.451 10.943 16.764 hybrid contribution -0.371 -0.851 -0.795 1.223 sum -2.875 11.599 10.148 15.678 Atomic orbital electron populations 1.23070 0.75782 1.04016 1.02812 1.86309 1.23939 1.22964 1.85127 1.19639 0.87077 0.85405 0.84351 1.68194 1.40681 0.98658 1.25109 1.24469 0.86893 0.94106 0.85361 1.68170 1.07252 1.32074 1.25341 1.19590 0.84850 0.87497 0.84937 1.86265 1.15139 1.31931 1.85607 1.23043 0.99430 0.80284 1.02934 1.19475 0.92298 0.94551 1.20830 1.17224 0.79256 0.82350 0.83998 1.90736 1.56902 1.63545 1.31218 1.48107 1.50408 1.27362 1.05707 1.21839 0.98832 0.96923 0.83419 1.21931 0.98222 0.95948 0.99931 1.18630 0.95373 0.93009 0.89918 1.21204 1.39159 0.97786 0.96642 0.92654 1.24958 0.95803 0.95371 0.97820 1.69839 1.47986 1.19748 1.15592 0.86622 0.79678 0.82201 0.79667 1.20777 1.21277 1.19929 1.22006 0.99546 0.96565 0.97990 1.21733 0.93128 0.84702 1.01295 0.91818 0.91436 0.87759 0.77619 0.91536 0.91751 0.87942 0.92891 0.91903 0.87858 0.94162 0.95420 0.93021 0.92000 0.92807 0.91970 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.41 101.05 1.05 1.49 16 2 O -0.28 -4.60 10.02 -17.57 -0.18 -4.77 16 3 C 0.42 6.80 7.38 -16.22 -0.12 6.68 16 4 N -0.59 -7.94 9.37 -14.36 -0.13 -8.08 16 5 C 0.38 4.25 12.26 -92.15 -1.13 3.12 16 6 N -0.59 -7.64 9.36 -14.36 -0.13 -7.78 16 7 C 0.42 6.41 7.54 -16.22 -0.12 6.29 16 8 O -0.29 -4.21 10.02 -17.56 -0.18 -4.38 16 9 C 0.04 0.37 10.41 101.05 1.05 1.42 16 10 C -0.26 -4.59 3.69 -104.44 -0.39 -4.97 16 11 C 0.59 11.78 6.40 -12.61 -0.08 11.70 16 12 O -0.55 -12.28 16.52 5.26 0.09 -12.20 16 13 N -0.58 -11.55 2.98 -174.39 -0.52 -12.07 16 14 C 0.11 2.20 6.31 -3.93 -0.02 2.18 16 15 C -0.12 -2.78 5.14 -26.84 -0.14 -2.92 16 16 C 0.05 1.18 2.07 -91.74 -0.19 1.00 16 17 C -0.51 -13.61 8.56 -34.44 -0.29 -13.91 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -24.55 11.31 55.43 0.63 -23.92 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.12 -2.58 5.30 -26.63 -0.14 -2.72 16 26 C 0.11 2.18 6.43 -3.73 -0.02 2.16 16 27 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.99 6.21 -51.93 -0.32 0.67 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 2.61 6.03 -51.93 -0.31 2.29 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.53 7.00 -51.93 -0.36 1.16 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -32.35 358.58 -6.72 -39.06 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.03 Total: -0.15 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -0.64 Total: 13.06 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.16 Total: -51.85 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.27 Total: -21.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.35 -6.72 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542911128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.940 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds