Wall clock time and date at job start Tue Mar 31 2020 13:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35292 * 117.00189 * 2 1 4 4 N 1.32808 * 120.58453 * 0.26550 * 3 2 1 5 5 C 1.31798 * 121.04100 * 180.26767 * 4 3 2 6 6 N 1.31793 * 122.30036 * 359.71722 * 5 4 3 7 7 C 1.32814 * 121.04327 * 0.02562 * 6 5 4 8 8 O 1.35290 * 120.58154 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00374 * 0.02562 * 8 7 6 10 10 C 1.40636 * 118.82892 * 359.97438 * 7 6 5 11 11 C 1.47219 * 121.02169 * 179.97438 * 10 7 6 12 12 O 1.21623 * 120.00062 * 90.00187 * 11 10 7 13 13 N 1.34777 * 119.99909 * 269.72845 * 11 10 7 14 14 C 1.46931 * 120.63091 * 359.97438 * 13 11 10 15 15 C 1.52760 * 109.00859 * 233.58755 * 14 13 11 16 16 C 1.53035 * 109.38643 * 305.58694 * 15 14 13 17 17 C 1.50690 * 109.45285 * 181.25405 * 16 15 14 18 18 H 1.08000 * 120.00618 * 239.94378 * 17 16 15 19 19 C 1.37886 * 120.00077 * 59.93888 * 17 16 15 20 20 N 1.31516 * 119.99674 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00134 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47055 * 90.00250 * 21 19 17 23 23 H 1.48504 * 109.47221 * 210.00276 * 21 19 17 24 24 H 1.48499 * 109.47429 * 330.00173 * 21 19 17 25 25 C 1.53042 * 109.53348 * 61.23842 * 16 15 14 26 26 C 1.46921 * 120.63272 * 180.27571 * 13 11 10 27 27 H 1.09004 * 109.46517 * 300.00054 * 1 2 3 28 28 H 1.09001 * 109.46755 * 59.99594 * 1 2 3 29 29 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.07995 * 118.84726 * 179.74751 * 5 4 3 31 31 H 1.09004 * 109.47003 * 300.00447 * 9 8 7 32 32 H 1.09004 * 109.47197 * 59.99629 * 9 8 7 33 33 H 1.08994 * 109.47187 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.58729 * 353.42164 * 14 13 11 35 35 H 1.09004 * 109.58544 * 113.84684 * 14 13 11 36 36 H 1.09004 * 109.56227 * 185.55264 * 15 14 13 37 37 H 1.09002 * 109.38627 * 65.52173 * 15 14 13 38 38 H 1.08999 * 109.46035 * 301.22702 * 16 15 14 39 39 H 0.96993 * 120.00018 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.49659 * 178.68178 * 25 16 15 41 41 H 1.09006 * 109.52138 * 58.60795 * 25 16 15 42 42 H 1.08995 * 109.59072 * 246.15177 * 26 13 11 43 43 H 1.09005 * 109.58560 * 6.43527 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 1.3314 2.3266 0.0053 5 6 1.9204 3.5056 0.0001 6 7 3.2316 3.6378 -0.0051 7 6 4.0272 2.5743 -0.0057 8 8 5.3721 2.7208 -0.0115 9 6 5.8792 4.0568 -0.0163 10 6 3.4469 1.2933 -0.0002 11 6 4.2830 0.0816 -0.0013 12 8 4.6330 -0.4166 1.0516 13 7 4.6559 -0.4788 -1.1689 14 6 4.2355 0.1077 -2.4488 15 6 3.5577 -0.9711 -3.2916 16 6 4.4955 -2.1727 -3.4284 17 6 3.8407 -3.2253 -4.2853 18 1 3.6526 -4.2095 -3.8824 19 6 3.4815 -2.9319 -5.5838 20 7 3.7109 -1.7335 -6.0746 21 14 2.6693 -4.2364 -6.6457 22 1 1.1951 -4.1594 -6.4834 23 1 3.0232 -4.0066 -8.0695 24 1 3.1436 -5.5803 -6.2284 25 6 4.7890 -2.7531 -2.0431 26 6 5.4851 -1.6915 -1.1861 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.3070 4.3945 0.0005 31 1 5.5240 4.5771 -0.9058 32 1 5.5314 4.5806 0.8741 33 1 6.9689 4.0318 -0.0202 34 1 3.5332 0.9208 -2.2650 35 1 5.1077 0.4885 -2.9803 36 1 3.3304 -0.5726 -4.2804 37 1 2.6341 -1.2839 -2.8044 38 1 5.4283 -1.8543 -3.8937 39 1 3.4586 -1.5272 -6.9882 40 1 5.4381 -3.6230 -2.1431 41 1 3.8544 -3.0494 -1.5668 42 1 6.4614 -1.4607 -1.6124 43 1 5.6092 -2.0638 -0.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542911128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:56 Heat of formation + Delta-G solvation = -79.252296 kcal Electronic energy + Delta-G solvation = -28484.623503 eV Core-core repulsion = 24530.270750 eV Total energy + Delta-G solvation = -3954.352753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.73106 -40.83292 -40.41937 -39.01577 -38.43454 -35.36814 -33.87721 -33.74690 -32.56217 -31.71744 -29.05924 -28.27037 -27.87872 -26.43994 -24.60920 -24.36362 -23.95489 -21.93566 -20.46769 -20.20447 -19.71448 -18.82090 -18.15919 -17.84739 -17.70370 -17.14755 -16.87205 -16.60252 -16.49028 -15.88522 -15.28836 -15.16342 -15.14150 -14.94710 -14.87427 -14.56877 -14.39305 -13.88740 -13.38640 -13.30316 -13.16162 -12.89718 -12.86903 -12.80725 -12.52047 -12.46804 -12.43476 -12.16512 -11.97508 -11.50183 -11.09007 -11.03088 -10.85315 -10.84690 -10.83021 -10.41718 -10.12948 -9.64341 -8.07802 -6.20850 -0.41987 -0.07955 1.31991 1.33998 1.41953 1.43948 1.53098 1.95351 2.11733 2.44653 2.49330 2.94177 2.97160 3.18984 3.31959 3.84698 3.87562 3.99196 4.22506 4.31787 4.32601 4.36635 4.38318 4.39834 4.41073 4.54116 4.61012 4.62093 4.69486 4.82859 4.83113 4.92755 5.16989 5.20480 5.38428 5.47755 5.53504 5.63374 5.81454 5.91841 5.96743 6.07687 6.33813 6.38805 6.78631 6.88211 6.99106 7.46853 8.96186 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.004228 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.323883 B = 6620.341573 C = 7093.438555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.416 3.584 4 N -0.590 5.590 5 C 0.389 3.611 6 N -0.587 5.587 7 C 0.419 3.581 8 O -0.308 6.308 9 C 0.031 3.969 10 C -0.302 4.302 11 C 0.590 3.410 12 O -0.578 6.578 13 N -0.588 5.588 14 C 0.128 3.872 15 C -0.108 4.108 16 C 0.047 3.953 17 C -0.532 4.532 18 H 0.049 0.951 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C -0.112 4.112 26 C 0.116 3.884 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 13.841 10.763 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.230 3.770 4 N -0.325 5.325 5 C 0.103 3.897 6 N -0.322 5.322 7 C 0.233 3.767 8 O -0.211 6.211 9 C -0.062 4.062 10 C -0.311 4.311 11 C 0.377 3.623 12 O -0.458 6.458 13 N -0.318 5.318 14 C 0.006 3.994 15 C -0.147 4.147 16 C 0.029 3.971 17 C -0.570 4.570 18 H 0.068 0.932 19 C -0.180 4.180 20 N -0.553 5.553 21 Si 0.776 3.224 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.150 4.150 26 C -0.006 4.006 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.274 0.726 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.239 13.908 11.125 18.102 hybrid contribution -0.161 -1.225 -0.841 1.495 sum -3.400 12.683 10.284 16.679 Atomic orbital electron populations 1.23326 0.73729 1.05331 1.03699 1.86268 1.26191 1.23784 1.85043 1.19765 0.86863 0.86133 0.84191 1.68329 1.40165 0.98515 1.25510 1.25599 0.86835 0.94871 0.82352 1.68332 1.07728 1.30653 1.25522 1.19681 0.85480 0.87322 0.84218 1.86242 1.14958 1.34713 1.85189 1.23367 1.00681 0.78431 1.03739 1.19431 0.92769 0.94234 1.24689 1.17591 0.78703 0.82808 0.83244 1.90696 1.58199 1.64810 1.32134 1.48146 1.50434 1.27454 1.05800 1.21600 0.98928 0.95979 0.82937 1.21670 0.97617 0.96340 0.99069 1.18592 0.94323 0.93137 0.91058 1.21516 1.39746 0.98209 0.97541 0.93232 1.25638 0.96283 0.97205 0.98920 1.69952 1.48462 1.21042 1.15852 0.85690 0.78799 0.79906 0.78049 1.20313 1.20864 1.19601 1.21850 0.99393 0.97357 0.96405 1.21699 0.93496 0.84271 1.01086 0.90322 0.91051 0.86355 0.72594 0.90789 0.90784 0.85750 0.91680 0.91443 0.90198 0.95545 0.97560 0.92937 0.91094 0.93952 0.90531 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.41 113.37 1.18 1.91 16 2 O -0.31 -10.12 10.02 -85.78 -0.86 -10.98 16 3 C 0.42 13.18 7.38 85.13 0.63 13.80 16 4 N -0.59 -14.62 9.37 -312.15 -2.92 -17.54 16 5 C 0.39 7.50 12.26 180.88 2.22 9.72 16 6 N -0.59 -13.67 9.36 -312.15 -2.92 -16.60 16 7 C 0.42 12.40 7.54 85.13 0.64 13.04 16 8 O -0.31 -8.71 10.02 -85.75 -0.86 -9.56 16 9 C 0.03 0.55 10.41 113.37 1.18 1.73 16 10 C -0.30 -10.45 3.69 -19.75 -0.07 -10.52 16 11 C 0.59 23.84 6.40 86.60 0.55 24.40 16 12 O -0.58 -26.40 16.52 -4.10 -0.07 -26.47 16 13 N -0.59 -23.35 2.98 -823.91 -2.45 -25.80 16 14 C 0.13 5.05 6.31 86.22 0.54 5.59 16 15 C -0.11 -5.04 5.14 30.53 0.16 -4.89 16 16 C 0.05 2.33 2.07 -11.52 -0.02 2.31 16 17 C -0.53 -28.81 8.56 25.60 0.22 -28.59 16 18 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 19 C 0.02 0.99 5.30 84.66 0.45 1.44 16 20 N -0.91 -50.70 11.31 21.45 0.24 -50.46 16 21 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 C -0.11 -4.75 5.30 30.66 0.16 -4.59 16 26 C 0.12 4.49 6.43 86.35 0.56 5.04 16 27 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 28 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.26 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 32 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.42 6.21 -2.39 -0.01 2.41 16 35 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.08 4.12 6.03 -2.38 -0.01 4.11 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 41 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.08 3.17 7.00 -2.38 -0.02 3.16 16 Total: -1.00 -70.57 358.58 1.60 -68.97 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.03 Total: 13.27 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 8.39 Total: 30.39 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -8.06 Total: -110.40 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.79 Total: -47.01 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.57 1.60 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542911128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds