Wall clock time and date at job start Tue Mar 31 2020 13:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00043 * 2 1 4 4 C 1.50700 * 109.47429 * 66.04115 * 3 2 1 5 5 C 1.33997 * 124.91942 * 89.72231 * 4 3 2 6 6 C 1.46778 * 106.18637 * 179.89995 * 5 4 3 7 7 C 1.39406 * 134.37308 * 180.12226 * 6 5 4 8 8 C 1.36740 * 119.71752 * 180.26510 * 7 6 5 9 9 C 1.38739 * 120.41693 * 359.97438 * 8 7 6 10 10 C 1.37849 * 120.68519 * 0.02562 * 9 8 7 11 11 C 1.38942 * 119.81972 * 0.02562 * 10 9 8 12 12 O 1.34445 * 124.92672 * 270.02602 * 4 3 2 13 13 C 1.46894 * 110.99767 * 236.04238 * 2 1 3 14 14 C 1.50700 * 109.47177 * 293.95527 * 13 2 1 15 15 C 1.38646 * 119.74916 * 269.73012 * 14 13 2 16 16 C 1.37619 * 120.24476 * 179.72002 * 15 14 13 17 17 C 1.40713 * 119.74649 * 0.57597 * 16 15 14 18 18 C 1.41400 * 120.24132 * 179.68122 * 17 16 15 19 19 H 1.07998 * 119.99631 * 204.39794 * 18 17 16 20 20 C 1.39943 * 120.00136 * 24.40389 * 18 17 16 21 21 N 1.30829 * 119.99985 * 17.84394 * 20 18 17 22 22 Si 1.86797 * 119.99893 * 197.84680 * 20 18 17 23 23 H 1.48497 * 109.47173 * 90.00002 * 22 20 18 24 24 H 1.48501 * 109.46908 * 209.99699 * 22 20 18 25 25 H 1.48493 * 109.47128 * 329.99831 * 22 20 18 26 26 C 1.40718 * 119.51175 * 359.69582 * 17 16 15 27 27 C 1.37612 * 119.74656 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47422 * 183.96033 * 1 2 3 29 29 H 1.09003 * 109.46993 * 303.95636 * 1 2 3 30 30 H 1.09006 * 109.47102 * 63.95480 * 1 2 3 31 31 H 1.08996 * 109.46674 * 186.05039 * 3 2 1 32 32 H 1.09000 * 109.46851 * 306.04286 * 3 2 1 33 33 H 1.08006 * 126.90512 * 0.02562 * 5 4 3 34 34 H 1.07996 * 120.14136 * 0.27507 * 7 6 5 35 35 H 1.07996 * 119.78843 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.66058 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.08985 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47291 * 53.95429 * 13 2 1 39 39 H 1.08999 * 109.47033 * 173.95605 * 13 2 1 40 40 H 1.07997 * 119.87190 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.12179 * 180.27259 * 16 15 14 42 42 H 0.96997 * 119.99463 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.12671 * 179.97438 * 26 17 16 44 44 H 1.07994 * 119.87819 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 6 2.3893 2.0269 2.4070 6 6 1.6586 2.8086 3.4117 7 6 1.9008 3.1598 4.7389 8 6 0.9871 3.9181 5.4170 9 6 -0.1778 4.3397 4.7924 10 6 -0.4344 4.0022 3.4807 11 6 0.4804 3.2315 2.7739 12 8 0.5131 2.7530 1.5141 13 6 1.9954 -0.7660 -1.1375 14 6 1.6368 -2.2204 -0.9727 15 6 2.5027 -3.0708 -0.3024 16 6 2.1828 -4.3995 -0.1410 17 6 0.9774 -4.8966 -0.6699 18 6 0.6414 -6.2615 -0.5160 19 1 -0.0341 -6.7333 -1.2141 20 6 1.1841 -7.0009 0.5410 21 7 1.7060 -6.3845 1.5702 22 14 1.1635 -8.8678 0.4822 23 1 2.4053 -9.3563 -0.1695 24 1 1.0852 -9.4057 1.8641 25 1 -0.0162 -9.3256 -0.2948 26 6 0.1088 -4.0256 -1.3533 27 6 0.4464 -2.6993 -1.4977 28 1 -0.3634 -1.0252 0.0710 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0797 1.3443 -0.1083 32 1 1.5612 1.9273 -0.8310 33 1 3.3427 1.5360 2.5348 34 1 2.8064 2.8345 5.2293 35 1 1.1734 4.1905 6.4453 36 1 -0.8914 4.9378 5.3397 37 1 -1.3446 4.3353 3.0041 38 1 1.5611 -0.3874 -2.0627 39 1 3.0797 -0.6612 -1.1755 40 1 3.4298 -2.6881 0.0981 41 1 2.8568 -5.0592 0.3853 42 1 2.0825 -6.8971 2.3026 43 1 -0.8187 -4.3966 -1.7635 44 1 -0.2183 -2.0290 -2.0222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568676278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:36 Heat of formation + Delta-G solvation = 51.793770 kcal Electronic energy + Delta-G solvation = -25249.361266 eV Core-core repulsion = 21711.540361 eV Total energy + Delta-G solvation = -3537.820906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48065 -38.34492 -37.88393 -36.52207 -33.75137 -32.88368 -30.95189 -30.49897 -29.74207 -29.17773 -27.25267 -26.77937 -24.56118 -23.02816 -22.18126 -21.61343 -20.95899 -20.69108 -19.71692 -17.41303 -17.28710 -16.90512 -16.41884 -15.72860 -15.33003 -14.99398 -14.88812 -14.58294 -14.18347 -13.95664 -13.69435 -13.38945 -13.17206 -13.00984 -12.48761 -12.40511 -12.34563 -12.18168 -11.94417 -11.76220 -11.55863 -11.45874 -11.26361 -11.06263 -11.00928 -10.84279 -10.52601 -10.38780 -10.14247 -9.60286 -9.36514 -9.12535 -8.71849 -8.25413 -8.02202 -7.43056 -7.28354 -6.75199 -4.34413 0.81844 1.26572 2.29386 2.64853 2.76645 3.07009 3.08926 3.10800 3.18626 3.62207 3.93321 4.25858 4.38493 4.59229 4.70891 4.80173 5.02054 5.06676 5.15814 5.17766 5.34967 5.45390 5.55629 5.68581 5.70713 5.73490 5.77152 5.89852 6.02034 6.12537 6.14745 6.19339 6.31086 6.34601 6.39650 6.41939 6.45013 6.58801 6.96454 7.07262 7.14713 7.25581 7.30566 7.33004 7.40931 7.62576 7.87946 8.06564 8.14754 8.31150 8.65700 8.90441 8.98847 10.18964 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002508 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.238066 B =11163.366221 C =11988.573328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.530 5.530 3 C 0.125 3.875 4 C 0.051 3.949 5 C -0.191 4.191 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.140 4.140 9 C -0.100 4.100 10 C -0.108 4.108 11 C 0.051 3.949 12 O -0.194 6.194 13 C 0.121 3.879 14 C -0.210 4.210 15 C -0.078 4.078 16 C -0.168 4.168 17 C 0.113 3.887 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.790 5.790 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.228 4.228 27 C -0.083 4.083 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.280 0.720 43 H 0.090 0.910 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 17.795 3.848 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.254 5.254 3 C -0.003 4.003 4 C 0.003 3.997 5 C -0.211 4.211 6 C -0.128 4.128 7 C -0.090 4.090 8 C -0.158 4.158 9 C -0.118 4.118 10 C -0.126 4.126 11 C 0.003 3.997 12 O -0.096 6.096 13 C -0.004 4.004 14 C -0.211 4.211 15 C -0.097 4.097 16 C -0.187 4.187 17 C 0.110 3.890 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.415 5.415 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.248 4.248 27 C -0.101 4.101 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.176 0.824 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.881 17.563 4.298 18.103 hybrid contribution -0.279 -0.529 -0.411 0.726 sum 0.602 17.033 3.888 17.482 Atomic orbital electron populations 1.22430 0.87061 1.03478 0.99264 1.62196 1.08580 1.09530 1.45133 1.20692 1.01012 0.89243 0.89321 1.22266 0.84612 0.94731 0.98045 1.22216 1.02820 1.04680 0.91386 1.20012 0.95640 1.01504 0.95621 1.20306 0.99564 0.97101 0.91981 1.20748 0.94724 1.00026 1.00274 1.20881 0.97603 0.99921 0.93370 1.19930 0.98695 0.99956 0.94023 1.19639 0.97094 0.99561 0.83388 1.83967 1.39460 1.57495 1.28662 1.20775 0.98521 0.92043 0.89071 1.18779 0.98845 0.92612 1.10906 1.20484 0.97514 0.93989 0.97713 1.21304 0.97883 0.94437 1.05111 1.17626 0.89993 0.92659 0.88698 1.19609 1.24784 0.94782 1.10067 0.90507 1.25914 0.93042 1.01079 0.94192 1.69841 1.28573 1.38106 1.04996 0.86328 0.79816 0.82387 0.78284 1.19278 1.20331 1.18658 1.20933 1.00108 0.93325 1.10395 1.20352 0.95327 0.95079 0.99391 0.89685 0.92337 0.96166 0.87607 0.93273 0.82376 0.85581 0.85530 0.85006 0.85269 0.95504 0.91385 0.89491 0.86523 0.90874 0.89191 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 8.95 60.07 0.54 0.96 16 2 N -0.53 -8.66 4.74 -245.83 -1.17 -9.83 16 3 C 0.12 1.64 5.47 -4.98 -0.03 1.61 16 4 C 0.05 0.72 5.82 -35.80 -0.21 0.52 16 5 C -0.19 -2.61 11.01 -37.62 -0.41 -3.03 16 6 C -0.13 -1.73 6.40 -105.16 -0.67 -2.40 16 7 C -0.07 -0.80 10.05 -39.69 -0.40 -1.20 16 8 C -0.14 -1.33 9.98 -39.94 -0.40 -1.73 16 9 C -0.10 -0.93 10.01 -39.54 -0.40 -1.33 16 10 C -0.11 -1.20 10.07 -39.46 -0.40 -1.60 16 11 C 0.05 0.70 7.42 -38.47 -0.29 0.42 16 12 O -0.19 -2.89 9.82 3.93 0.04 -2.85 16 13 C 0.12 2.05 5.11 -4.98 -0.03 2.02 16 14 C -0.21 -4.43 4.91 -104.32 -0.51 -4.94 16 15 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 16 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 17 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 18 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 20 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 21 N -0.79 -20.55 10.95 55.55 0.61 -19.95 16 22 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 27 C -0.08 -1.81 7.92 -39.66 -0.31 -2.12 16 28 H 0.08 1.61 6.16 -51.93 -0.32 1.29 16 29 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.05 0.60 8.12 -51.93 -0.42 0.17 16 33 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 39 H 0.07 1.04 7.87 -51.93 -0.41 0.64 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 42 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 44 H 0.08 1.61 8.02 -52.49 -0.42 1.19 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -28.91 367.12 -11.66 -40.57 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.00 Total: 6.91 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -5.64 Total: -34.06 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: -0.56 Total: -29.77 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.91 -11.66 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568676278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.361 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds