Wall clock time and date at job start Tue Mar 31 2020 13:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00043 * 2 1 4 4 C 1.50700 * 109.47429 * 66.04115 * 3 2 1 5 5 C 1.33997 * 124.91942 * 89.72231 * 4 3 2 6 6 C 1.46778 * 106.18637 * 179.89995 * 5 4 3 7 7 C 1.39406 * 134.37308 * 180.12226 * 6 5 4 8 8 C 1.36740 * 119.71752 * 180.26510 * 7 6 5 9 9 C 1.38739 * 120.41693 * 359.97438 * 8 7 6 10 10 C 1.37849 * 120.68519 * 0.02562 * 9 8 7 11 11 C 1.38942 * 119.81972 * 0.02562 * 10 9 8 12 12 O 1.34445 * 124.92672 * 270.02602 * 4 3 2 13 13 C 1.46894 * 110.99767 * 236.04238 * 2 1 3 14 14 C 1.50700 * 109.47177 * 293.95527 * 13 2 1 15 15 C 1.38646 * 119.74916 * 269.73012 * 14 13 2 16 16 C 1.37619 * 120.24476 * 179.72002 * 15 14 13 17 17 C 1.40713 * 119.74649 * 0.57597 * 16 15 14 18 18 C 1.41400 * 120.24132 * 179.68122 * 17 16 15 19 19 H 1.07998 * 119.99631 * 204.39794 * 18 17 16 20 20 C 1.39943 * 120.00136 * 24.40389 * 18 17 16 21 21 N 1.30829 * 119.99985 * 17.84394 * 20 18 17 22 22 Si 1.86797 * 119.99893 * 197.84680 * 20 18 17 23 23 H 1.48497 * 109.47173 * 90.00002 * 22 20 18 24 24 H 1.48501 * 109.46908 * 209.99699 * 22 20 18 25 25 H 1.48493 * 109.47128 * 329.99831 * 22 20 18 26 26 C 1.40718 * 119.51175 * 359.69582 * 17 16 15 27 27 C 1.37612 * 119.74656 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47422 * 183.96033 * 1 2 3 29 29 H 1.09003 * 109.46993 * 303.95636 * 1 2 3 30 30 H 1.09006 * 109.47102 * 63.95480 * 1 2 3 31 31 H 1.08996 * 109.46674 * 186.05039 * 3 2 1 32 32 H 1.09000 * 109.46851 * 306.04286 * 3 2 1 33 33 H 1.08006 * 126.90512 * 0.02562 * 5 4 3 34 34 H 1.07996 * 120.14136 * 0.27507 * 7 6 5 35 35 H 1.07996 * 119.78843 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.66058 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.08985 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47291 * 53.95429 * 13 2 1 39 39 H 1.08999 * 109.47033 * 173.95605 * 13 2 1 40 40 H 1.07997 * 119.87190 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.12179 * 180.27259 * 16 15 14 42 42 H 0.96997 * 119.99463 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.12671 * 179.97438 * 26 17 16 44 44 H 1.07994 * 119.87819 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 6 2.3893 2.0269 2.4070 6 6 1.6586 2.8086 3.4117 7 6 1.9008 3.1598 4.7389 8 6 0.9871 3.9181 5.4170 9 6 -0.1778 4.3397 4.7924 10 6 -0.4344 4.0022 3.4807 11 6 0.4804 3.2315 2.7739 12 8 0.5131 2.7530 1.5141 13 6 1.9954 -0.7660 -1.1375 14 6 1.6368 -2.2204 -0.9727 15 6 2.5027 -3.0708 -0.3024 16 6 2.1828 -4.3995 -0.1410 17 6 0.9774 -4.8966 -0.6699 18 6 0.6414 -6.2615 -0.5160 19 1 -0.0341 -6.7333 -1.2141 20 6 1.1841 -7.0009 0.5410 21 7 1.7060 -6.3845 1.5702 22 14 1.1635 -8.8678 0.4822 23 1 2.4053 -9.3563 -0.1695 24 1 1.0852 -9.4057 1.8641 25 1 -0.0162 -9.3256 -0.2948 26 6 0.1088 -4.0256 -1.3533 27 6 0.4464 -2.6993 -1.4977 28 1 -0.3634 -1.0252 0.0710 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0797 1.3443 -0.1083 32 1 1.5612 1.9273 -0.8310 33 1 3.3427 1.5360 2.5348 34 1 2.8064 2.8345 5.2293 35 1 1.1734 4.1905 6.4453 36 1 -0.8914 4.9378 5.3397 37 1 -1.3446 4.3353 3.0041 38 1 1.5611 -0.3874 -2.0627 39 1 3.0797 -0.6612 -1.1755 40 1 3.4298 -2.6881 0.0981 41 1 2.8568 -5.0592 0.3853 42 1 2.0825 -6.8971 2.3026 43 1 -0.8187 -4.3966 -1.7635 44 1 -0.2183 -2.0290 -2.0222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568676278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:35 Heat of formation + Delta-G solvation = 38.091776 kcal Electronic energy + Delta-G solvation = -25249.955429 eV Core-core repulsion = 21711.540361 eV Total energy + Delta-G solvation = -3538.415069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43083 -39.85601 -38.87933 -37.96272 -35.54332 -33.90214 -32.43421 -31.34360 -31.26426 -30.76568 -28.80303 -27.94604 -26.10125 -24.07821 -23.36538 -22.82431 -22.59615 -21.73720 -21.39005 -19.20122 -18.31258 -17.83618 -17.49121 -17.17113 -16.71327 -16.20523 -16.10522 -15.92510 -15.63334 -15.18640 -15.02177 -14.80241 -14.38868 -14.14356 -14.00729 -13.77367 -13.52678 -13.31910 -13.21311 -13.18042 -12.99979 -12.74484 -12.70622 -12.57080 -12.42223 -12.26525 -12.05429 -11.84243 -11.41700 -11.21789 -11.06975 -10.99003 -9.60254 -9.39849 -9.31195 -9.10507 -9.07771 -8.62047 -6.31836 -0.05359 0.40655 0.95104 1.18011 1.33808 1.37473 1.50573 1.53016 1.73570 2.20878 2.68950 2.78299 3.20822 3.40651 3.73810 3.81052 4.04779 4.13686 4.16294 4.18406 4.26459 4.33377 4.39203 4.48826 4.50162 4.54810 4.59310 4.65652 4.71322 4.81723 4.85277 4.95586 5.04491 5.08925 5.17350 5.26422 5.35425 5.41133 5.49042 5.49687 5.51791 5.73516 5.77414 5.92276 6.02164 6.12862 6.15353 6.23468 6.31446 6.42091 6.73943 6.96531 7.07081 8.34525 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002508 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.238066 B =11163.366221 C =11988.573328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.546 5.546 3 C 0.131 3.869 4 C 0.033 3.967 5 C -0.199 4.199 6 C -0.155 4.155 7 C -0.085 4.085 8 C -0.136 4.136 9 C -0.091 4.091 10 C -0.122 4.122 11 C 0.021 3.979 12 O -0.210 6.210 13 C 0.126 3.874 14 C -0.194 4.194 15 C -0.084 4.084 16 C -0.193 4.193 17 C 0.079 3.921 18 C -0.503 4.503 19 H 0.072 0.928 20 C 0.034 3.966 21 N -0.826 5.826 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.246 4.246 27 C -0.081 4.081 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.169 0.831 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.145 0.855 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.287 0.713 43 H 0.092 0.908 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 19.764 4.462 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.271 5.271 3 C 0.004 3.996 4 C -0.014 4.014 5 C -0.219 4.219 6 C -0.156 4.156 7 C -0.103 4.103 8 C -0.154 4.154 9 C -0.109 4.109 10 C -0.140 4.140 11 C -0.026 4.026 12 O -0.113 6.113 13 C 0.000 4.000 14 C -0.196 4.196 15 C -0.103 4.103 16 C -0.212 4.212 17 C 0.077 3.923 18 C -0.533 4.533 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.452 5.452 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.265 4.265 27 C -0.100 4.100 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.187 0.813 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.053 19.555 4.908 20.189 hybrid contribution -0.358 -0.876 -0.522 1.080 sum 0.695 18.680 4.386 19.200 Atomic orbital electron populations 1.22282 0.87603 1.01631 0.99954 1.62015 1.08268 1.11826 1.44993 1.20763 1.02268 0.87213 0.89386 1.22445 0.84832 0.95496 0.98641 1.22497 1.03243 1.04555 0.91591 1.20327 0.95985 1.02458 0.96799 1.20648 1.00798 0.97507 0.91351 1.21207 0.94043 0.98549 1.01594 1.21379 0.97982 0.98888 0.92649 1.20337 0.98993 0.99843 0.94868 1.20150 0.98253 1.00819 0.83354 1.83917 1.39917 1.58007 1.29429 1.20731 1.00064 0.89076 0.90089 1.19252 0.97432 0.94966 1.07909 1.20754 0.98676 0.93200 0.97661 1.21275 0.97910 0.95668 1.06387 1.17965 0.90894 0.93482 0.90001 1.19834 1.26528 0.95678 1.11257 0.90943 1.26753 0.92157 1.05911 0.93215 1.69899 1.29530 1.40059 1.05689 0.85216 0.79926 0.75999 0.78626 1.18585 1.19285 1.18308 1.21140 1.00172 0.94498 1.10735 1.20658 0.96002 0.94380 0.98935 0.92481 0.92826 0.94495 0.85300 0.91857 0.81350 0.84059 0.82324 0.81486 0.83764 0.93600 0.89220 0.87614 0.88434 0.90258 0.88975 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 8.95 127.69 1.14 2.22 16 2 N -0.55 -16.78 4.74 -931.65 -4.42 -21.20 16 3 C 0.13 3.13 5.47 85.56 0.47 3.60 16 4 C 0.03 0.91 5.82 24.72 0.14 1.06 16 5 C -0.20 -5.35 11.01 23.54 0.26 -5.09 16 6 C -0.15 -4.14 6.40 -20.21 -0.13 -4.27 16 7 C -0.09 -1.78 10.05 22.20 0.22 -1.56 16 8 C -0.14 -2.21 9.98 22.04 0.22 -1.99 16 9 C -0.09 -1.45 10.01 22.30 0.22 -1.22 16 10 C -0.12 -2.56 10.07 22.35 0.23 -2.33 16 11 C 0.02 0.58 7.42 22.99 0.17 0.75 16 12 O -0.21 -6.21 9.82 -8.86 -0.09 -6.30 16 13 C 0.13 3.90 5.11 85.56 0.44 4.34 16 14 C -0.19 -7.96 4.91 -19.67 -0.10 -8.06 16 15 C -0.08 -3.88 9.67 22.22 0.21 -3.67 16 16 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 17 C 0.08 4.37 5.58 -21.29 -0.12 4.26 16 18 C -0.50 -28.01 9.05 23.46 0.21 -27.80 16 19 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 20 C 0.03 1.78 5.14 85.26 0.44 2.22 16 21 N -0.83 -44.59 10.95 21.83 0.24 -44.35 16 22 Si 0.98 39.25 29.60 68.60 2.03 41.28 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 26 C -0.25 -12.31 9.80 22.73 0.22 -12.09 16 27 C -0.08 -3.50 7.92 22.22 0.18 -3.32 16 28 H 0.06 2.13 6.16 -2.39 -0.01 2.12 16 29 H 0.05 1.76 6.58 -2.39 -0.02 1.74 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.13 2.46 7.93 -2.39 -0.02 2.44 16 32 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 33 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 39 H 0.09 2.42 7.87 -2.39 -0.02 2.40 16 40 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 42 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 43 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.11 4.11 8.02 -2.91 -0.02 4.09 16 Total: -1.00 -66.03 367.12 3.39 -62.64 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 1.00 Total: 31.04 kcal Atomic # 6 Polarization: -67.74 SS G_CDS: 4.63 Total: -63.11 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -4.18 Total: -65.55 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.09 Total: -6.30 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -66.03 3.39 -62.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568676278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.736 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds