Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35654 * 119.95412 * 2 1 4 4 O 1.34684 * 119.11443 * 0.02562 * 3 2 1 5 5 N 1.31850 * 121.77093 * 179.97438 * 3 2 1 6 6 C 1.32564 * 121.61407 * 0.02562 * 5 3 2 7 7 C 1.39434 * 119.70224 * 0.02562 * 6 5 3 8 8 C 1.46892 * 120.81979 * 179.97438 * 7 6 5 9 9 O 1.21676 * 120.00360 * 45.42628 * 8 7 6 10 10 N 1.34776 * 119.99812 * 225.69590 * 8 7 6 11 11 C 1.46929 * 120.62968 * 354.31722 * 10 8 7 12 12 C 1.53617 * 108.54381 * 126.36671 * 11 10 8 13 13 C 1.53037 * 109.24737 * 54.85337 * 12 11 10 14 14 C 1.52997 * 109.45147 * 178.49504 * 13 12 11 15 15 C 1.50695 * 109.47538 * 295.06116 * 14 13 12 16 16 H 1.08002 * 119.99609 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00368 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99997 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99831 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47397 * 89.99699 * 19 17 15 21 21 H 1.48499 * 109.46961 * 209.99686 * 19 17 15 22 22 H 1.48501 * 109.47234 * 329.99482 * 19 17 15 23 23 C 1.53035 * 109.53898 * 298.51690 * 13 12 11 24 24 C 1.46931 * 120.63267 * 174.58928 * 10 8 7 25 25 C 1.35023 * 119.94969 * 180.26916 * 2 1 3 26 26 O 1.21829 * 120.76994 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46681 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46983 * 119.99793 * 1 2 3 29 29 H 1.09001 * 109.47319 * 240.00206 * 1 2 3 30 30 H 0.96699 * 117.00029 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.15425 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.58567 * 246.19907 * 11 10 8 33 33 H 1.08999 * 109.58531 * 6.61703 * 11 10 8 34 34 H 1.09002 * 109.63628 * 294.85780 * 12 11 10 35 35 H 1.09006 * 109.43014 * 174.72351 * 12 11 10 36 36 H 1.09008 * 109.45711 * 58.53013 * 13 12 11 37 37 H 1.08995 * 109.46868 * 55.06630 * 14 13 12 38 38 H 1.09007 * 109.46969 * 175.06165 * 14 13 12 39 39 H 0.97006 * 119.99680 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.49499 * 301.40800 * 23 13 12 41 41 H 1.09002 * 109.52574 * 181.33181 * 23 13 12 42 42 H 1.09001 * 109.58558 * 353.38136 * 24 10 8 43 43 H 1.09003 * 109.58224 * 113.66193 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4501 2.3306 0.0005 5 7 3.4602 1.2171 0.0005 6 6 4.1906 0.1108 0.0005 7 6 3.5604 -1.1330 -0.0005 8 6 4.3457 -2.3744 -0.0011 9 8 5.2956 -2.4939 0.7498 10 7 4.0171 -3.3792 -0.8372 11 6 2.8054 -3.2989 -1.6642 12 6 3.1976 -3.5380 -3.1301 13 6 3.9471 -4.8676 -3.2414 14 6 4.3072 -5.1286 -4.7053 15 6 3.0452 -5.3122 -5.5081 16 1 2.0825 -5.2486 -5.0228 17 6 3.1195 -5.5602 -6.8623 18 7 2.0181 -5.7209 -7.5628 19 14 4.7846 -5.6693 -7.7018 20 1 5.2639 -7.0744 -7.6701 21 1 4.6583 -5.2211 -9.1119 22 1 5.7554 -4.7990 -6.9909 23 6 5.2269 -4.8053 -2.4046 24 6 4.8608 -4.5782 -0.9346 25 6 2.1392 -1.1699 -0.0055 26 8 1.5433 -2.2325 -0.0100 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 1.9635 3.1501 0.0009 31 1 5.2688 0.1726 0.0014 32 1 2.0938 -4.0603 -1.3446 33 1 2.3572 -2.3107 -1.5608 34 1 3.8408 -2.7279 -3.4740 35 1 2.2981 -3.5748 -3.7448 36 1 3.3122 -5.6741 -2.8743 37 1 4.8677 -4.2804 -5.0982 38 1 4.9162 -6.0300 -4.7745 39 1 2.0704 -5.8950 -8.5157 40 1 5.8511 -3.9834 -2.7553 41 1 5.7724 -5.7439 -2.5029 42 1 5.7692 -4.4343 -0.3497 43 1 4.3143 -5.4413 -0.5545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570634030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = -47.497124 kcal Electronic energy + Delta-G solvation = -27911.135472 eV Core-core repulsion = 23958.159727 eV Total energy + Delta-G solvation = -3952.975745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44415 -40.07195 -38.95207 -37.60799 -36.96834 -35.64118 -33.87760 -32.14498 -31.22817 -30.33931 -28.45634 -28.41241 -25.63479 -24.45929 -23.95420 -22.77657 -21.69253 -20.23129 -19.71107 -19.36886 -18.84001 -17.66925 -17.19290 -16.72154 -16.48044 -16.19344 -15.61247 -15.26102 -14.96281 -14.57251 -14.31126 -14.13818 -13.82949 -13.61853 -13.48609 -13.12851 -13.03922 -12.84881 -12.60455 -12.46703 -12.22164 -11.78778 -11.40921 -11.20661 -10.89181 -10.77551 -10.62272 -10.58907 -10.44869 -10.19895 -9.86053 -9.67581 -9.54571 -9.35692 -9.00491 -8.67317 -8.50553 -8.21590 -6.01734 -3.98563 0.09492 1.30888 1.42418 2.59654 2.89545 3.21313 3.32269 3.39714 3.42571 3.44000 3.68902 4.05903 4.47702 4.57890 4.75775 4.84355 5.07381 5.12567 5.24301 5.30567 5.33932 5.41402 5.48731 5.58666 5.67611 5.76543 5.93707 5.96103 6.06572 6.21494 6.38660 6.42970 6.47534 6.55194 6.73187 6.90513 6.94414 7.05729 7.20161 7.30715 7.37019 7.49815 7.69432 7.83535 8.34958 8.57565 9.03656 9.61672 11.11627 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003539 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.216068 B = 7910.743031 C = 8725.713804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.509 5.509 3 C 0.603 3.397 4 O -0.455 6.455 5 N -0.591 5.591 6 C 0.254 3.746 7 C -0.338 4.338 8 C 0.590 3.410 9 O -0.555 6.555 10 N -0.588 5.588 11 C 0.109 3.891 12 C -0.124 4.124 13 C -0.073 4.073 14 C -0.009 4.009 15 C -0.514 4.514 16 H 0.073 0.927 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.131 4.131 24 C 0.113 3.887 25 C 0.543 3.457 26 O -0.495 6.495 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.444 0.556 31 H 0.183 0.817 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 17.758 17.030 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.237 5.237 3 C 0.304 3.696 4 O -0.253 6.253 5 N -0.333 5.333 6 C 0.109 3.891 7 C -0.349 4.349 8 C 0.377 3.623 9 O -0.435 6.435 10 N -0.318 5.318 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.091 4.091 14 C -0.046 4.046 15 C -0.552 4.552 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.545 5.545 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.169 4.169 24 C -0.009 4.009 25 C 0.344 3.656 26 O -0.370 6.370 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.307 0.693 31 H 0.200 0.800 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.000 17.335 17.225 24.458 hybrid contribution 0.619 -0.246 -0.754 1.006 sum -0.382 17.089 16.471 23.737 Atomic orbital electron populations 1.22276 0.75545 1.05265 1.05418 1.46506 1.11172 1.05052 1.60934 1.20294 0.85121 0.81549 0.82653 1.84139 1.39243 1.14842 1.87098 1.68448 1.00605 1.31758 1.32440 1.22860 1.00389 0.84715 0.81152 1.21521 0.92425 0.96904 1.24026 1.17102 0.83129 0.82065 0.79991 1.90769 1.30596 1.81425 1.40713 1.47991 1.25561 1.17909 1.40367 1.22493 0.85297 1.03305 0.90180 1.22089 1.01864 0.97871 0.94360 1.21007 0.94416 0.96690 0.97013 1.19620 0.97434 0.95952 0.91636 1.21157 0.93003 1.48171 0.92849 0.90875 1.25024 0.96183 0.94810 0.97515 1.69920 1.27187 1.49866 1.07518 0.86811 0.85277 0.78755 0.78626 1.20371 1.21540 1.19069 1.22053 0.99199 1.01812 0.93809 1.21660 0.95100 0.86365 0.97753 1.16874 0.87861 0.82011 0.78876 1.91048 1.70366 1.26103 1.49505 0.88061 0.88992 0.89351 0.69349 0.80039 0.91031 0.89763 0.92787 0.89612 0.91759 0.96745 0.97059 0.92865 0.92111 0.91095 0.89594 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.10 59.85 0.60 0.98 16 2 N -0.51 -4.80 2.99 -128.28 -0.38 -5.18 16 3 C 0.60 4.54 8.60 -88.68 -0.76 3.78 16 4 O -0.46 -1.54 11.91 -15.81 -0.19 -1.73 16 5 N -0.59 -5.13 10.30 -13.98 -0.14 -5.27 16 6 C 0.25 2.71 10.94 -16.79 -0.18 2.53 16 7 C -0.34 -4.63 5.25 -104.44 -0.55 -5.18 16 8 C 0.59 9.85 7.11 -12.76 -0.09 9.76 16 9 O -0.55 -10.35 16.44 5.21 0.09 -10.26 16 10 N -0.59 -9.91 2.96 -173.96 -0.52 -10.43 16 11 C 0.11 1.86 4.45 -3.49 -0.02 1.84 16 12 C -0.12 -2.34 5.20 -26.39 -0.14 -2.48 16 13 C -0.07 -1.45 2.10 -90.58 -0.19 -1.64 16 14 C -0.01 -0.22 3.52 -27.89 -0.10 -0.31 16 15 C -0.51 -14.43 8.94 -34.44 -0.31 -14.74 16 16 H 0.07 2.20 7.30 -52.49 -0.38 1.81 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -27.88 13.96 55.43 0.77 -27.11 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 C -0.13 -2.21 5.36 -26.62 -0.14 -2.35 16 24 C 0.11 1.82 6.42 -3.71 -0.02 1.80 16 25 C 0.54 7.18 5.95 -14.64 -0.09 7.10 16 26 O -0.49 -7.76 12.91 5.07 0.07 -7.70 16 27 H 0.10 0.41 6.77 -51.93 -0.35 0.06 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.44 -0.54 9.08 45.56 0.41 -0.13 16 31 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 33 H 0.08 1.38 3.75 -52.62 -0.20 1.18 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.78 6.91 -51.93 -0.36 1.42 16 36 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.36 7.04 -51.93 -0.37 0.99 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -36.54 345.93 -6.81 -43.35 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.97 Total: -0.97 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.08 Total: 2.87 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.27 Total: -47.99 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.54 -6.81 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570634030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds