Wall clock time and date at job start Tue Mar 31 2020 13:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35654 * 119.95412 * 2 1 4 4 O 1.34684 * 119.11443 * 0.02562 * 3 2 1 5 5 N 1.31850 * 121.77093 * 179.97438 * 3 2 1 6 6 C 1.32564 * 121.61407 * 0.02562 * 5 3 2 7 7 C 1.39434 * 119.70224 * 0.02562 * 6 5 3 8 8 C 1.46892 * 120.81979 * 179.97438 * 7 6 5 9 9 O 1.21676 * 120.00360 * 45.42628 * 8 7 6 10 10 N 1.34776 * 119.99812 * 225.69590 * 8 7 6 11 11 C 1.46929 * 120.62968 * 354.31722 * 10 8 7 12 12 C 1.53617 * 108.54381 * 126.36671 * 11 10 8 13 13 C 1.53037 * 109.24737 * 54.85337 * 12 11 10 14 14 C 1.52997 * 109.45147 * 178.49504 * 13 12 11 15 15 C 1.50695 * 109.47538 * 295.06116 * 14 13 12 16 16 H 1.08002 * 119.99609 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00368 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99997 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99831 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47397 * 89.99699 * 19 17 15 21 21 H 1.48499 * 109.46961 * 209.99686 * 19 17 15 22 22 H 1.48501 * 109.47234 * 329.99482 * 19 17 15 23 23 C 1.53035 * 109.53898 * 298.51690 * 13 12 11 24 24 C 1.46931 * 120.63267 * 174.58928 * 10 8 7 25 25 C 1.35023 * 119.94969 * 180.26916 * 2 1 3 26 26 O 1.21829 * 120.76994 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46681 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46983 * 119.99793 * 1 2 3 29 29 H 1.09001 * 109.47319 * 240.00206 * 1 2 3 30 30 H 0.96699 * 117.00029 * 179.97438 * 4 3 2 31 31 H 1.07999 * 120.15425 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.58567 * 246.19907 * 11 10 8 33 33 H 1.08999 * 109.58531 * 6.61703 * 11 10 8 34 34 H 1.09002 * 109.63628 * 294.85780 * 12 11 10 35 35 H 1.09006 * 109.43014 * 174.72351 * 12 11 10 36 36 H 1.09008 * 109.45711 * 58.53013 * 13 12 11 37 37 H 1.08995 * 109.46868 * 55.06630 * 14 13 12 38 38 H 1.09007 * 109.46969 * 175.06165 * 14 13 12 39 39 H 0.97006 * 119.99680 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.49499 * 301.40800 * 23 13 12 41 41 H 1.09002 * 109.52574 * 181.33181 * 23 13 12 42 42 H 1.09001 * 109.58558 * 353.38136 * 24 10 8 43 43 H 1.09003 * 109.58224 * 113.66193 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4501 2.3306 0.0005 5 7 3.4602 1.2171 0.0005 6 6 4.1906 0.1108 0.0005 7 6 3.5604 -1.1330 -0.0005 8 6 4.3457 -2.3744 -0.0011 9 8 5.2956 -2.4939 0.7498 10 7 4.0171 -3.3792 -0.8372 11 6 2.8054 -3.2989 -1.6642 12 6 3.1976 -3.5380 -3.1301 13 6 3.9471 -4.8676 -3.2414 14 6 4.3072 -5.1286 -4.7053 15 6 3.0452 -5.3122 -5.5081 16 1 2.0825 -5.2486 -5.0228 17 6 3.1195 -5.5602 -6.8623 18 7 2.0181 -5.7209 -7.5628 19 14 4.7846 -5.6693 -7.7018 20 1 5.2639 -7.0744 -7.6701 21 1 4.6583 -5.2211 -9.1119 22 1 5.7554 -4.7990 -6.9909 23 6 5.2269 -4.8053 -2.4046 24 6 4.8608 -4.5782 -0.9346 25 6 2.1392 -1.1699 -0.0055 26 8 1.5433 -2.2325 -0.0100 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 1.9635 3.1501 0.0009 31 1 5.2688 0.1726 0.0014 32 1 2.0938 -4.0603 -1.3446 33 1 2.3572 -2.3107 -1.5608 34 1 3.8408 -2.7279 -3.4740 35 1 2.2981 -3.5748 -3.7448 36 1 3.3122 -5.6741 -2.8743 37 1 4.8677 -4.2804 -5.0982 38 1 4.9162 -6.0300 -4.7745 39 1 2.0704 -5.8950 -8.5157 40 1 5.8511 -3.9834 -2.7553 41 1 5.7724 -5.7439 -2.5029 42 1 5.7692 -4.4343 -0.3497 43 1 4.3143 -5.4413 -0.5545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570634030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:11 Heat of formation + Delta-G solvation = -76.424085 kcal Electronic energy + Delta-G solvation = -27912.389839 eV Core-core repulsion = 23958.159727 eV Total energy + Delta-G solvation = -3954.230112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.27384 -41.15630 -39.83941 -38.81553 -37.90835 -36.44025 -35.59642 -34.05468 -32.43305 -31.52365 -30.22164 -29.06628 -26.80979 -25.71166 -24.89427 -24.18459 -23.24328 -21.58452 -20.67842 -20.19086 -20.04048 -18.87256 -18.64808 -18.05706 -17.43125 -17.03946 -16.76288 -16.37297 -16.24143 -15.86221 -15.56948 -15.27034 -15.11808 -14.89907 -14.67373 -14.40468 -14.24085 -14.21496 -13.89924 -13.54660 -13.40964 -13.12710 -13.06245 -12.74752 -12.41693 -12.15655 -12.01808 -11.94788 -11.68835 -11.43075 -11.41160 -11.32354 -11.07308 -10.95378 -10.80547 -10.68173 -9.68173 -9.51469 -8.25552 -6.27654 -0.68511 0.56791 0.64557 1.36539 1.37722 1.49724 1.53755 2.02822 2.23831 2.38167 2.44434 3.06356 3.09828 3.21790 3.58822 3.89032 3.98654 4.04334 4.11166 4.21692 4.27270 4.31669 4.38908 4.46631 4.55742 4.64832 4.71753 4.80940 4.87595 4.89964 4.95631 5.08045 5.15601 5.17788 5.21045 5.30537 5.40945 5.60128 5.70423 5.73210 5.99316 6.34162 6.39460 6.47287 6.57070 6.79378 7.09688 7.35994 8.91081 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003539 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.216068 B = 7910.743031 C = 8725.713804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.511 5.511 3 C 0.619 3.381 4 O -0.433 6.433 5 N -0.587 5.587 6 C 0.282 3.718 7 C -0.383 4.383 8 C 0.589 3.411 9 O -0.580 6.580 10 N -0.595 5.595 11 C 0.128 3.872 12 C -0.116 4.116 13 C -0.071 4.071 14 C -0.005 4.005 15 C -0.518 4.518 16 H 0.035 0.965 17 C 0.004 3.996 18 N -0.953 5.953 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.248 1.248 23 C -0.119 4.119 24 C 0.114 3.886 25 C 0.542 3.458 26 O -0.534 6.534 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.467 0.533 31 H 0.198 0.802 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 20.149 17.739 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.238 5.238 3 C 0.322 3.678 4 O -0.234 6.234 5 N -0.328 5.328 6 C 0.134 3.866 7 C -0.395 4.395 8 C 0.379 3.621 9 O -0.463 6.463 10 N -0.325 5.325 11 C 0.005 3.995 12 C -0.154 4.154 13 C -0.089 4.089 14 C -0.042 4.042 15 C -0.557 4.557 16 H 0.053 0.947 17 C -0.192 4.192 18 N -0.594 5.594 19 Si 0.770 3.230 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.172 1.172 23 C -0.157 4.157 24 C -0.008 4.008 25 C 0.343 3.657 26 O -0.413 6.413 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.334 0.666 31 H 0.215 0.785 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.474 19.820 17.954 26.747 hybrid contribution -0.006 -0.784 -0.913 1.204 sum 0.468 19.036 17.041 25.553 Atomic orbital electron populations 1.22489 0.73828 1.07179 1.05210 1.46387 1.12247 1.04841 1.60298 1.20420 0.84789 0.82254 0.80366 1.84175 1.38974 1.14571 1.85631 1.68594 1.01013 1.30481 1.32713 1.23123 1.01269 0.84078 0.78152 1.21296 0.92704 0.96610 1.28842 1.17498 0.82901 0.82648 0.79079 1.90734 1.31950 1.82071 1.41523 1.48062 1.25439 1.18469 1.40553 1.22236 0.85221 1.03430 0.88584 1.21961 1.00472 0.97538 0.95454 1.20929 0.96038 0.96666 0.95295 1.19565 0.95255 0.96115 0.93283 1.21452 0.93419 1.47367 0.93413 0.94653 1.25958 1.00344 0.94575 0.98365 1.70074 1.29849 1.51523 1.07987 0.85716 0.80368 0.79439 0.77464 1.19359 1.21185 1.17189 1.21933 0.97352 1.02818 0.93587 1.21663 0.95414 0.86523 0.97160 1.16827 0.87867 0.82518 0.78480 1.91015 1.71062 1.27666 1.51547 0.84976 0.89684 0.89254 0.66576 0.78522 0.92465 0.88756 0.92561 0.92452 0.92999 0.96540 0.96377 0.92707 0.91847 0.89461 0.88942 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.10 127.77 1.29 1.90 16 2 N -0.51 -8.78 2.99 -789.41 -2.36 -11.15 16 3 C 0.62 7.42 8.60 179.67 1.55 8.96 16 4 O -0.43 -1.07 11.91 -79.49 -0.95 -2.02 16 5 N -0.59 -8.42 10.30 -311.74 -3.21 -11.63 16 6 C 0.28 5.46 10.94 84.87 0.93 6.39 16 7 C -0.38 -10.25 5.25 -19.75 -0.10 -10.36 16 8 C 0.59 19.58 7.11 86.51 0.62 20.19 16 9 O -0.58 -21.44 16.44 -4.27 -0.07 -21.51 16 10 N -0.59 -20.10 2.96 -822.53 -2.44 -22.54 16 11 C 0.13 4.46 4.45 86.51 0.39 4.85 16 12 C -0.12 -4.51 5.20 30.81 0.16 -4.35 16 13 C -0.07 -2.83 2.10 -10.77 -0.02 -2.85 16 14 C 0.00 -0.23 3.52 29.85 0.10 -0.12 16 15 C -0.52 -29.91 8.94 25.60 0.23 -29.68 16 16 H 0.04 2.24 7.30 -2.91 -0.02 2.22 16 17 C 0.00 0.22 5.47 84.65 0.46 0.68 16 18 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 19 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 23 C -0.12 -3.88 5.36 30.67 0.16 -3.71 16 24 C 0.11 3.61 6.42 86.36 0.55 4.16 16 25 C 0.54 14.13 5.95 85.18 0.51 14.64 16 26 O -0.53 -17.18 12.91 -4.76 -0.06 -17.24 16 27 H 0.13 0.64 6.77 -2.39 -0.02 0.63 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.47 -3.39 9.08 -74.06 -0.67 -4.06 16 31 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 32 H 0.06 2.15 7.84 -2.39 -0.02 2.13 16 33 H 0.09 3.16 3.75 -13.40 -0.05 3.11 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.53 6.91 -2.38 -0.02 2.51 16 36 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 38 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 39 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.09 2.83 7.04 -2.39 -0.02 2.81 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -81.36 345.93 0.20 -81.16 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.29 Total: 7.45 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.82 Total: 10.70 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -7.71 Total: -105.25 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.08 Total: -40.78 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -81.36 0.20 -81.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570634030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.731 kcal (2) G-P(sol) polarization free energy of solvation -81.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds