Wall clock time and date at job start Tue Mar 31 2020 13:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35502 * 116.99520 * 2 1 4 4 N 1.32191 * 119.72643 * 359.73016 * 3 2 1 5 5 C 1.31857 * 121.88094 * 179.71266 * 4 3 2 6 6 C 1.38939 * 121.08747 * 0.56474 * 5 4 3 7 7 N 1.40173 * 120.34431 * 179.74701 * 6 5 4 8 8 C 1.34776 * 119.99966 * 212.74722 * 7 6 5 9 9 O 1.21282 * 120.00319 * 5.26719 * 8 7 6 10 10 C 1.50701 * 119.99535 * 185.26476 * 8 7 6 11 11 C 1.53001 * 109.46864 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47087 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46864 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00033 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00329 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46567 * 59.99920 * 18 16 14 20 20 H 1.48496 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47238 * 300.00556 * 18 16 14 22 22 C 1.38910 * 119.31704 * 359.72824 * 6 5 4 23 23 C 1.39952 * 118.28797 * 359.97438 * 22 6 5 24 24 C 1.47537 * 120.56224 * 179.97438 * 23 22 6 25 25 N 1.34768 * 120.00096 * 0.02562 * 24 23 22 26 26 O 1.21588 * 119.99591 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47020 * 299.99295 * 1 2 3 29 29 H 1.09000 * 109.47698 * 59.99860 * 1 2 3 30 30 H 1.07992 * 119.45687 * 180.29296 * 5 4 3 31 31 H 0.97004 * 119.99491 * 32.73972 * 7 6 5 32 32 H 1.08996 * 109.47524 * 300.00045 * 10 8 7 33 33 H 1.09006 * 109.47227 * 60.00033 * 10 8 7 34 34 H 1.09000 * 109.47388 * 299.99674 * 11 10 8 35 35 H 1.09003 * 109.47201 * 60.00592 * 11 10 8 36 36 H 1.09004 * 109.47103 * 300.00010 * 12 11 10 37 37 H 1.08998 * 109.47335 * 59.99810 * 12 11 10 38 38 H 1.08996 * 109.47265 * 300.00283 * 13 12 11 39 39 H 1.08998 * 109.46759 * 60.00571 * 13 12 11 40 40 H 0.97001 * 119.99849 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.85587 * 180.02562 * 22 6 5 42 42 H 0.97002 * 120.00002 * 0.02562 * 25 24 23 43 43 H 0.96998 * 120.00056 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 7 1.3187 2.3125 -0.0054 5 6 1.8726 3.5091 0.0000 6 6 3.2538 3.6603 -0.0001 7 7 3.8260 4.9399 0.0004 8 6 4.9972 5.1545 -0.6310 9 8 5.5083 4.2661 -1.2795 10 6 5.6717 6.4985 -0.5313 11 6 6.9750 6.4756 -1.3324 12 6 7.6602 7.8399 -1.2307 13 6 8.9632 7.8173 -2.0323 14 6 9.6377 9.1612 -1.9326 15 1 9.1827 9.9522 -1.3549 16 6 10.8355 9.3810 -2.5789 17 7 11.3893 8.4179 -3.2829 18 14 11.6713 11.0471 -2.4559 19 1 11.9714 11.3464 -1.0326 20 1 12.9354 11.0255 -3.2349 21 1 10.7713 12.0940 -3.0028 22 6 4.0617 2.5303 -0.0002 23 6 3.4450 1.2740 0.0004 24 6 4.2548 0.0408 -0.0002 25 7 5.6003 0.1181 -0.0008 26 8 3.7082 -1.0453 -0.0003 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.2424 4.3860 0.0000 31 1 3.3790 5.6709 0.4550 32 1 5.0114 7.2671 -0.9328 33 1 5.8917 6.7180 0.5135 34 1 7.6352 5.7071 -0.9305 35 1 6.7555 6.2560 -2.3773 36 1 7.0002 8.6088 -1.6324 37 1 7.8798 8.0592 -0.1858 38 1 9.6233 7.0483 -1.6311 39 1 8.7431 7.5983 -3.0772 40 1 12.2323 8.5724 -3.7373 41 1 5.1380 2.6190 0.0002 42 1 6.0363 0.9847 -0.0004 43 1 6.1327 -0.6927 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:24 Heat of formation + Delta-G solvation = -90.194607 kcal Electronic energy + Delta-G solvation = -25770.369205 eV Core-core repulsion = 21815.541958 eV Total energy + Delta-G solvation = -3954.827247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53642 -40.15178 -39.07265 -38.13963 -35.32582 -34.90485 -34.16285 -32.76403 -32.37678 -30.62919 -29.35104 -27.52940 -25.80371 -25.20436 -23.70712 -22.40949 -21.20311 -20.55211 -20.09810 -19.01716 -18.34020 -18.05925 -16.86185 -16.63666 -16.41185 -16.33994 -16.16380 -15.91365 -15.00275 -14.79718 -14.58307 -14.50731 -14.25624 -14.16429 -13.66620 -13.58028 -13.35730 -12.71148 -12.42954 -12.12899 -11.82086 -11.75873 -11.68698 -11.03703 -10.94552 -10.74207 -10.63348 -10.59789 -10.50515 -10.21763 -10.13607 -9.89633 -9.76632 -9.69311 -9.30584 -9.06092 -8.35716 -8.34987 -5.99887 -4.02748 0.22877 0.76127 2.29747 2.55461 2.65386 2.82027 3.19122 3.31830 3.36759 3.38529 3.44757 3.86232 4.22504 4.35910 4.44928 4.50888 4.71198 4.93833 4.99655 5.02942 5.03497 5.13285 5.18004 5.32788 5.35500 5.47730 5.56216 5.69473 6.00406 6.13713 6.17089 6.42294 6.54834 6.72359 6.85253 6.89115 6.97761 7.05340 7.12311 7.32128 7.67796 7.82865 7.83961 8.00587 8.03251 8.42145 9.04637 9.61194 11.11270 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.001973 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.887439 B =14185.608578 C =15051.296476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.272 6.272 3 C 0.355 3.645 4 N -0.525 5.525 5 C 0.146 3.854 6 C 0.057 3.943 7 N -0.673 5.673 8 C 0.513 3.487 9 O -0.517 6.517 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.013 4.013 23 C -0.195 4.195 24 C 0.572 3.428 25 N -0.850 5.850 26 O -0.521 6.521 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.158 0.842 42 H 0.402 0.598 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 -12.191 10.381 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.176 6.176 3 C 0.175 3.825 4 N -0.248 5.248 5 C -0.014 4.014 6 C -0.040 4.040 7 N -0.321 5.321 8 C 0.302 3.698 9 O -0.391 6.391 10 C -0.177 4.177 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.041 4.041 23 C -0.201 4.201 24 C 0.356 3.644 25 N -0.415 5.415 26 O -0.398 6.398 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.251 0.749 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.176 0.824 42 H 0.232 0.768 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -22.449 -13.835 9.785 28.127 hybrid contribution 1.367 1.758 0.191 2.235 sum -21.082 -12.076 9.976 26.264 Atomic orbital electron populations 1.22965 0.77491 1.03331 1.02340 1.86533 1.22337 1.22762 1.85968 1.19774 0.88048 0.85119 0.89581 1.67434 1.39417 0.98068 1.19889 1.22462 0.90844 0.94533 0.93519 1.18477 0.92891 0.86242 1.06382 1.43634 1.24073 1.08968 1.55385 1.21445 0.79622 0.91596 0.77092 1.90711 1.63521 1.45984 1.38918 1.21839 0.99369 0.92555 1.03913 1.21487 0.93117 0.99886 0.99755 1.21655 0.98998 0.93631 1.00552 1.19088 0.90637 0.96904 0.95061 1.21230 1.05821 0.98140 1.30863 0.92796 1.25043 0.97372 0.96757 0.95382 1.69961 1.18589 1.32236 1.32617 0.86667 0.78810 0.84479 0.78073 1.20280 1.21304 1.20285 1.21682 1.01473 0.89236 0.91662 1.19862 0.91492 0.94438 1.14344 1.17687 0.82375 0.88161 0.76135 1.43734 1.06763 1.12898 1.78092 1.90871 1.71623 1.28467 1.48796 0.88357 0.92228 0.92186 0.81426 0.74854 0.88573 0.88473 0.91662 0.91627 0.93379 0.93375 0.96597 0.96590 0.92949 0.82449 0.76776 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.38 101.05 1.05 1.33 16 2 O -0.27 -3.37 8.57 -40.02 -0.34 -3.71 16 3 C 0.36 4.25 7.51 -16.64 -0.12 4.13 16 4 N -0.52 -5.35 9.19 -12.84 -0.12 -5.47 16 5 C 0.15 1.17 11.10 -17.28 -0.19 0.98 16 6 C 0.06 0.51 6.31 -83.53 -0.53 -0.02 16 7 N -0.67 -4.97 5.36 -9.78 -0.05 -5.02 16 8 C 0.51 5.49 7.59 -10.99 -0.08 5.41 16 9 O -0.52 -7.44 13.67 5.56 0.08 -7.36 16 10 C -0.14 -1.41 5.70 -27.88 -0.16 -1.57 16 11 C -0.10 -1.62 4.50 -26.73 -0.12 -1.74 16 12 C -0.11 -2.09 5.15 -26.73 -0.14 -2.23 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.01 -0.13 8.23 -38.69 -0.32 -0.45 16 23 C -0.19 -2.27 5.90 -104.71 -0.62 -2.88 16 24 C 0.57 7.05 8.04 -12.47 -0.10 6.95 16 25 N -0.85 -7.41 8.83 30.46 0.27 -7.15 16 26 O -0.52 -8.16 16.02 -16.53 -0.26 -8.42 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.41 1.54 8.82 -40.82 -0.36 1.18 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.16 1.57 4.92 -52.49 -0.26 1.31 16 42 H 0.40 2.91 6.93 -40.82 -0.28 2.63 16 43 H 0.41 2.91 8.93 -40.82 -0.36 2.55 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -36.84 368.85 -6.91 -43.75 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.87 Total: 0.68 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.88 Total: -3.11 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.83 Total: -43.75 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.53 Total: -19.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.84 -6.91 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.446 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds