Wall clock time and date at job start Tue Mar 31 2020 13:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35502 * 116.99520 * 2 1 4 4 N 1.32191 * 119.72643 * 359.73016 * 3 2 1 5 5 C 1.31857 * 121.88094 * 179.71266 * 4 3 2 6 6 C 1.38939 * 121.08747 * 0.56474 * 5 4 3 7 7 N 1.40173 * 120.34431 * 179.74701 * 6 5 4 8 8 C 1.34776 * 119.99966 * 212.74722 * 7 6 5 9 9 O 1.21282 * 120.00319 * 5.26719 * 8 7 6 10 10 C 1.50701 * 119.99535 * 185.26476 * 8 7 6 11 11 C 1.53001 * 109.46864 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47087 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46864 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00033 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00329 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46567 * 59.99920 * 18 16 14 20 20 H 1.48496 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47238 * 300.00556 * 18 16 14 22 22 C 1.38910 * 119.31704 * 359.72824 * 6 5 4 23 23 C 1.39952 * 118.28797 * 359.97438 * 22 6 5 24 24 C 1.47537 * 120.56224 * 179.97438 * 23 22 6 25 25 N 1.34768 * 120.00096 * 0.02562 * 24 23 22 26 26 O 1.21588 * 119.99591 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47020 * 299.99295 * 1 2 3 29 29 H 1.09000 * 109.47698 * 59.99860 * 1 2 3 30 30 H 1.07992 * 119.45687 * 180.29296 * 5 4 3 31 31 H 0.97004 * 119.99491 * 32.73972 * 7 6 5 32 32 H 1.08996 * 109.47524 * 300.00045 * 10 8 7 33 33 H 1.09006 * 109.47227 * 60.00033 * 10 8 7 34 34 H 1.09000 * 109.47388 * 299.99674 * 11 10 8 35 35 H 1.09003 * 109.47201 * 60.00592 * 11 10 8 36 36 H 1.09004 * 109.47103 * 300.00010 * 12 11 10 37 37 H 1.08998 * 109.47335 * 59.99810 * 12 11 10 38 38 H 1.08996 * 109.47265 * 300.00283 * 13 12 11 39 39 H 1.08998 * 109.46759 * 60.00571 * 13 12 11 40 40 H 0.97001 * 119.99849 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.85587 * 180.02562 * 22 6 5 42 42 H 0.97002 * 120.00002 * 0.02562 * 25 24 23 43 43 H 0.96998 * 120.00056 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 7 1.3187 2.3125 -0.0054 5 6 1.8726 3.5091 0.0000 6 6 3.2538 3.6603 -0.0001 7 7 3.8260 4.9399 0.0004 8 6 4.9972 5.1545 -0.6310 9 8 5.5083 4.2661 -1.2795 10 6 5.6717 6.4985 -0.5313 11 6 6.9750 6.4756 -1.3324 12 6 7.6602 7.8399 -1.2307 13 6 8.9632 7.8173 -2.0323 14 6 9.6377 9.1612 -1.9326 15 1 9.1827 9.9522 -1.3549 16 6 10.8355 9.3810 -2.5789 17 7 11.3893 8.4179 -3.2829 18 14 11.6713 11.0471 -2.4559 19 1 11.9714 11.3464 -1.0326 20 1 12.9354 11.0255 -3.2349 21 1 10.7713 12.0940 -3.0028 22 6 4.0617 2.5303 -0.0002 23 6 3.4450 1.2740 0.0004 24 6 4.2548 0.0408 -0.0002 25 7 5.6003 0.1181 -0.0008 26 8 3.7082 -1.0453 -0.0003 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.2424 4.3860 0.0000 31 1 3.3790 5.6709 0.4550 32 1 5.0114 7.2671 -0.9328 33 1 5.8917 6.7180 0.5135 34 1 7.6352 5.7071 -0.9305 35 1 6.7555 6.2560 -2.3773 36 1 7.0002 8.6088 -1.6324 37 1 7.8798 8.0592 -0.1858 38 1 9.6233 7.0483 -1.6311 39 1 8.7431 7.5983 -3.0772 40 1 12.2323 8.5724 -3.7373 41 1 5.1380 2.6190 0.0002 42 1 6.0363 0.9847 -0.0004 43 1 6.1327 -0.6927 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:24 Heat of formation + Delta-G solvation = -119.399292 kcal Electronic energy + Delta-G solvation = -25771.635615 eV Core-core repulsion = 21815.541958 eV Total energy + Delta-G solvation = -3956.093657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30885 -40.99751 -39.97797 -38.94618 -36.66651 -35.89560 -35.05545 -34.59100 -33.18977 -31.84802 -30.51005 -28.27939 -27.34944 -26.00081 -24.83114 -23.71284 -22.16767 -21.67614 -21.32779 -19.79924 -19.11740 -18.87414 -18.37988 -17.68905 -17.34992 -17.23487 -17.11436 -16.85854 -16.49233 -15.86060 -15.70699 -15.52067 -15.18580 -15.14507 -14.55416 -14.48401 -14.40010 -14.07750 -13.72126 -13.56926 -13.25189 -12.78307 -12.76888 -12.49263 -12.36836 -12.11529 -12.07314 -11.74660 -11.58608 -11.32656 -11.30690 -11.17761 -11.00097 -10.93951 -10.74828 -10.51844 -10.51466 -9.09227 -8.16660 -6.28229 -0.52674 -0.02050 1.42088 1.45277 1.48431 1.53118 1.77936 1.85735 2.09934 2.39874 2.43515 2.66020 3.16272 3.19157 3.47946 3.65392 3.74748 3.91810 4.09636 4.21946 4.25762 4.32584 4.42324 4.42692 4.67010 4.73076 4.74289 4.77166 4.89880 4.92354 4.93824 5.25346 5.37797 5.41115 5.47388 5.61819 5.79758 5.83375 5.92315 6.11418 6.25718 6.28300 6.38069 6.57543 6.90882 7.11430 7.19651 7.41371 8.94977 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.001973 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.887439 B =14185.608578 C =15051.296476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.298 6.298 3 C 0.340 3.660 4 N -0.529 5.529 5 C 0.162 3.838 6 C 0.052 3.948 7 N -0.649 5.649 8 C 0.515 3.485 9 O -0.562 6.562 10 C -0.125 4.125 11 C -0.098 4.098 12 C -0.097 4.097 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.016 4.016 23 C -0.215 4.215 24 C 0.567 3.433 25 N -0.833 5.833 26 O -0.564 6.564 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.212 0.788 31 H 0.437 0.563 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.062 0.938 38 H -0.014 1.014 39 H -0.016 1.016 40 H 0.262 0.738 41 H 0.157 0.843 42 H 0.411 0.589 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.374 -9.491 11.850 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.203 6.203 3 C 0.161 3.839 4 N -0.253 5.253 5 C 0.002 3.998 6 C -0.045 4.045 7 N -0.298 5.298 8 C 0.305 3.695 9 O -0.439 6.439 10 C -0.164 4.164 11 C -0.136 4.136 12 C -0.135 4.135 13 C -0.020 4.020 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.044 4.044 23 C -0.222 4.222 24 C 0.352 3.648 25 N -0.398 5.398 26 O -0.444 6.444 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.278 0.722 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.004 0.996 39 H 0.002 0.998 40 H 0.070 0.930 41 H 0.174 0.826 42 H 0.242 0.758 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -24.144 -11.096 11.295 28.872 hybrid contribution 1.876 0.931 -0.282 2.113 sum -22.268 -10.165 11.013 26.841 Atomic orbital electron populations 1.23173 0.75773 1.04666 1.02828 1.86500 1.24262 1.23547 1.86025 1.19979 0.88344 0.85569 0.90046 1.67527 1.39285 0.98296 1.20161 1.23136 0.90892 0.95000 0.90756 1.18559 0.93289 0.86285 1.06331 1.43325 1.22968 1.09058 1.54416 1.21468 0.80148 0.91177 0.76692 1.90717 1.64858 1.47248 1.41075 1.21693 0.96825 0.93131 1.04774 1.21269 0.95580 0.97230 0.99541 1.21451 0.95986 0.96007 1.00012 1.19066 0.93535 0.95196 0.94163 1.21751 1.06208 0.99281 1.30643 0.91560 1.26067 0.98359 1.01034 0.94962 1.70121 1.19111 1.34763 1.33766 0.85483 0.77508 0.79331 0.78614 1.18925 1.21307 1.19001 1.21723 1.01653 0.89407 0.91625 1.19863 0.91685 0.94556 1.16098 1.17946 0.83212 0.88017 0.75626 1.43615 1.05874 1.13796 1.76544 1.90835 1.72528 1.29858 1.51189 0.86739 0.91428 0.91865 0.77156 0.72228 0.85651 0.85455 0.93324 0.93781 0.92110 0.91931 0.99596 0.99790 0.92950 0.82600 0.75774 0.75334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.38 113.37 1.18 1.66 16 2 O -0.30 -7.57 8.57 -67.17 -0.58 -8.14 16 3 C 0.34 8.11 7.51 85.13 0.64 8.75 16 4 N -0.53 -9.90 9.19 -307.54 -2.83 -12.73 16 5 C 0.16 2.08 11.10 84.86 0.94 3.02 16 6 C 0.05 0.81 6.31 38.14 0.24 1.05 16 7 N -0.65 -7.24 5.36 -303.24 -1.63 -8.86 16 8 C 0.52 9.71 7.59 87.66 0.67 10.37 16 9 O -0.56 -15.75 13.67 -3.04 -0.04 -15.79 16 10 C -0.12 -2.13 5.70 29.85 0.17 -1.96 16 11 C -0.10 -2.95 4.50 30.60 0.14 -2.81 16 12 C -0.10 -3.54 5.15 30.60 0.16 -3.38 16 13 C 0.02 0.91 4.97 29.85 0.15 1.06 16 14 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 15 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 16 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 17 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.02 -0.32 8.23 22.85 0.19 -0.13 16 23 C -0.22 -5.08 5.90 -19.92 -0.12 -5.20 16 24 C 0.57 14.58 8.04 86.70 0.70 15.28 16 25 N -0.83 -15.07 8.83 -175.82 -1.55 -16.62 16 26 O -0.56 -18.60 16.02 16.87 0.27 -18.33 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 29 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.44 1.05 8.82 -92.71 -0.82 0.23 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 35 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.16 3.08 4.92 -2.91 -0.01 3.07 16 42 H 0.41 6.12 6.93 -92.71 -0.64 5.48 16 43 H 0.41 6.18 8.93 -92.71 -0.83 5.35 16 Total: -1.00 -84.01 368.85 0.49 -83.52 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -1.21 Total: 10.80 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.74 Total: -2.17 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -5.72 Total: -95.50 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.35 Total: -42.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -84.01 0.49 -83.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.877 kcal (2) G-P(sol) polarization free energy of solvation -84.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds