Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00358 * 2 1 4 4 N 1.46491 * 109.47517 * 124.99629 * 3 2 1 5 5 C 1.46501 * 120.00361 * 269.99773 * 4 3 2 6 6 C 1.50698 * 109.47251 * 270.00529 * 5 4 3 7 7 H 1.07998 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00165 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46812 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47071 * 119.99549 * 10 8 6 13 13 H 1.48497 * 109.47254 * 239.99812 * 10 8 6 14 14 C 1.34778 * 119.99846 * 90.00275 * 4 3 2 15 15 O 1.21599 * 119.99914 * 180.02562 * 14 4 3 16 16 N 1.34778 * 120.00237 * 359.97438 * 14 4 3 17 17 C 1.40394 * 119.99988 * 184.22613 * 16 14 4 18 18 C 1.39036 * 120.43903 * 325.81288 * 17 16 14 19 19 C 1.38574 * 118.48093 * 180.02562 * 18 17 16 20 20 C 1.38718 * 119.29492 * 0.02562 * 19 18 17 21 21 O 1.35749 * 119.58459 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00096 * 179.97438 * 21 20 19 23 23 N 1.32334 * 120.83416 * 359.97438 * 20 19 18 24 24 C 1.32270 * 121.64241 * 359.71275 * 23 20 19 25 25 O 1.35753 * 119.68674 * 180.28589 * 24 23 20 26 26 C 1.42903 * 116.99626 * 0.29117 * 25 24 23 27 27 H 1.07999 * 120.00570 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99949 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46785 * 4.99208 * 3 2 1 31 31 H 1.09003 * 109.47236 * 245.00158 * 3 2 1 32 32 H 1.09004 * 109.46645 * 29.99803 * 5 4 3 33 33 H 1.08995 * 109.47432 * 150.00015 * 5 4 3 34 34 H 0.96994 * 120.00057 * 180.02562 * 9 8 6 35 35 H 0.96996 * 119.99499 * 4.49516 * 16 14 4 36 36 H 1.07993 * 120.76088 * 0.03262 * 18 17 16 37 37 H 1.08004 * 120.34940 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47277 * 60.00140 * 22 21 20 39 39 H 1.09006 * 109.46943 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47114 * 299.99665 * 22 21 20 41 41 H 1.09000 * 109.47359 * 299.99400 * 26 25 24 42 42 H 1.08997 * 109.47711 * 60.00066 * 26 25 24 43 43 H 1.09003 * 109.47055 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8651 2.4248 6 6 2.8442 3.3437 2.4802 7 1 3.3039 3.8370 1.6365 8 6 2.5194 4.0667 3.6083 9 7 1.9600 3.4660 4.6360 10 14 2.8737 5.8995 3.6773 11 1 3.5025 6.3304 2.4029 12 1 1.6036 6.6420 3.8791 13 1 3.7974 6.1830 4.8050 14 6 4.2496 0.8661 0.9824 15 8 5.0216 0.8880 1.9216 16 7 4.6497 0.3752 -0.2074 17 6 5.9276 -0.1910 -0.3393 18 6 7.0003 0.3143 0.3867 19 6 8.2439 -0.2751 0.2248 20 6 8.3804 -1.3428 -0.6501 21 8 9.5959 -1.9249 -0.8128 22 6 9.6734 -3.0205 -1.7270 23 7 7.3403 -1.8017 -1.3276 24 6 6.1366 -1.2697 -1.1955 25 8 5.0962 -1.7758 -1.9057 26 6 5.3754 -2.8819 -2.7664 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 1.4887 1.6968 2.5458 33 1 3.0989 1.3605 3.2259 34 1 1.7312 3.9747 5.4295 35 1 4.0561 0.4167 -0.9734 36 1 6.8673 1.1470 1.0613 37 1 9.0981 0.0935 0.7735 38 1 9.3733 -2.6868 -2.7203 39 1 10.6976 -3.3919 -1.7630 40 1 9.0088 -3.8182 -1.3954 41 1 6.1195 -2.5877 -3.5065 42 1 5.7592 -3.7139 -2.1760 43 1 4.4602 -3.1876 -3.2736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590111047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -24.409556 kcal Electronic energy + Delta-G solvation = -27312.239742 eV Core-core repulsion = 23360.265149 eV Total energy + Delta-G solvation = -3951.974593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09688 -39.61899 -38.86124 -37.14587 -35.78301 -34.48113 -33.11361 -32.20176 -31.67795 -29.58741 -27.95830 -27.48783 -26.42994 -25.44758 -23.54489 -23.08155 -22.20970 -20.06771 -19.41629 -18.87899 -18.15403 -17.56965 -16.88697 -16.46828 -16.39587 -15.87888 -15.60005 -15.13369 -15.08976 -14.80451 -14.44408 -14.13431 -13.75509 -13.50092 -13.32726 -13.05391 -12.90895 -12.73497 -12.26666 -12.13728 -11.81834 -11.77075 -11.70012 -11.30155 -11.09579 -10.88023 -10.86185 -10.61177 -10.34310 -10.18081 -9.98807 -9.63880 -9.41586 -9.19504 -9.05995 -8.42780 -7.84573 -7.44025 -6.03356 -4.08102 1.21763 1.33718 2.42746 2.89634 3.01405 3.27549 3.30510 3.38419 3.42655 3.63201 3.98554 4.21846 4.38751 4.52359 4.95862 5.06623 5.09319 5.12366 5.15294 5.15761 5.27465 5.30948 5.35945 5.40617 5.42619 5.52927 5.55269 5.79540 5.97784 6.09334 6.17904 6.43541 6.71885 6.77406 6.81175 6.88616 6.95052 7.36274 7.37500 7.51377 7.66520 7.70672 7.94596 8.23685 8.56684 8.92908 9.22149 9.57283 11.04505 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003610 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.007369 B = 7754.873846 C = 9310.001695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C 0.137 3.863 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.701 3.299 15 O -0.572 6.572 16 N -0.682 5.682 17 C 0.085 3.915 18 C -0.015 4.015 19 C -0.201 4.201 20 C 0.327 3.673 21 O -0.307 6.307 22 C 0.042 3.958 23 N -0.577 5.577 24 C 0.325 3.675 25 O -0.305 6.305 26 C 0.044 3.956 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -12.331 -16.500 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.013 3.987 4 N -0.335 5.335 5 C 0.142 3.858 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.403 3.597 15 O -0.449 6.449 16 N -0.333 5.333 17 C -0.014 4.014 18 C -0.042 4.042 19 C -0.222 4.222 20 C 0.150 3.850 21 O -0.214 6.214 22 C -0.053 4.053 23 N -0.315 5.315 24 C 0.144 3.856 25 O -0.212 6.212 26 C -0.052 4.052 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.188 0.812 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.424 -12.800 -16.018 21.807 hybrid contribution -0.279 1.150 -0.070 1.186 sum 7.145 -11.650 -16.089 21.110 Atomic orbital electron populations 1.23806 0.95794 1.01749 1.00514 1.23444 0.96461 0.99027 0.99901 1.20532 0.93178 0.95715 0.89250 1.47558 1.08662 1.63014 1.14225 1.19248 0.95301 0.93578 0.77635 1.21494 1.40412 0.93361 1.01245 0.92359 1.24926 0.95097 0.98714 0.95331 1.69944 1.42127 1.36058 1.05174 0.86453 0.77879 0.85010 0.78118 1.19822 1.21037 1.20892 1.15920 0.83267 0.78589 0.81963 1.90868 1.52761 1.61867 1.39359 1.42680 1.14663 1.63651 1.12356 1.17329 0.86848 0.95108 1.02113 1.21649 0.88472 0.98396 0.95731 1.20897 0.99294 0.98682 1.03376 1.19286 0.83488 0.90750 0.91509 1.86267 1.25811 1.47445 1.61870 1.22788 1.02441 0.87684 0.92422 1.66682 0.99494 1.34843 1.30528 1.19062 0.84998 0.89148 0.92392 1.86244 1.30980 1.48474 1.55484 1.22799 1.02215 0.87381 0.92761 0.88793 0.88264 0.87672 0.89011 0.91503 0.94733 0.93678 0.92779 0.75749 0.81171 0.83651 0.92620 0.88859 0.92580 0.92566 0.92532 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.02 0.42 -1.92 16 2 C -0.17 -2.42 9.85 -36.03 -0.35 -2.77 16 3 C 0.14 2.21 5.65 -5.20 -0.03 2.18 16 4 N -0.60 -12.60 2.44 -182.19 -0.44 -13.05 16 5 C 0.26 6.75 5.16 -5.19 -0.03 6.72 16 6 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 14 C 0.70 14.76 8.14 -86.92 -0.71 14.05 16 15 O -0.57 -14.13 13.37 5.28 0.07 -14.06 16 16 N -0.68 -11.44 5.08 -13.96 -0.07 -11.51 16 17 C 0.08 1.39 6.36 -83.24 -0.53 0.86 16 18 C -0.02 -0.25 8.81 -39.16 -0.34 -0.59 16 19 C -0.20 -2.85 10.03 -39.28 -0.39 -3.25 16 20 C 0.33 4.58 7.48 -17.16 -0.13 4.45 16 21 O -0.31 -3.79 10.48 -18.96 -0.20 -3.99 16 22 C 0.04 0.37 10.38 101.05 1.05 1.42 16 23 N -0.58 -8.03 8.06 -13.26 -0.11 -8.13 16 24 C 0.32 4.77 7.50 -16.97 -0.13 4.64 16 25 O -0.30 -3.92 10.05 -18.97 -0.19 -4.11 16 26 C 0.04 0.40 10.38 101.05 1.05 1.45 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.24 7.84 -52.48 -0.41 0.83 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 32 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.41 5.79 6.28 -40.82 -0.26 5.53 16 36 H 0.17 3.09 6.27 -52.49 -0.33 2.76 16 37 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.04 371.41 -6.05 -39.09 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.87 Total: 5.23 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -0.55 Total: 13.89 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.11 Total: -58.28 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.32 Total: -22.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.04 -6.05 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590111047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.681 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds