Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00358 * 2 1 4 4 N 1.46491 * 109.47517 * 124.99629 * 3 2 1 5 5 C 1.46501 * 120.00361 * 269.99773 * 4 3 2 6 6 C 1.50698 * 109.47251 * 270.00529 * 5 4 3 7 7 H 1.07998 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00165 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46812 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47071 * 119.99549 * 10 8 6 13 13 H 1.48497 * 109.47254 * 239.99812 * 10 8 6 14 14 C 1.34778 * 119.99846 * 90.00275 * 4 3 2 15 15 O 1.21599 * 119.99914 * 180.02562 * 14 4 3 16 16 N 1.34778 * 120.00237 * 359.97438 * 14 4 3 17 17 C 1.40394 * 119.99988 * 184.22613 * 16 14 4 18 18 C 1.39036 * 120.43903 * 325.81288 * 17 16 14 19 19 C 1.38574 * 118.48093 * 180.02562 * 18 17 16 20 20 C 1.38718 * 119.29492 * 0.02562 * 19 18 17 21 21 O 1.35749 * 119.58459 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00096 * 179.97438 * 21 20 19 23 23 N 1.32334 * 120.83416 * 359.97438 * 20 19 18 24 24 C 1.32270 * 121.64241 * 359.71275 * 23 20 19 25 25 O 1.35753 * 119.68674 * 180.28589 * 24 23 20 26 26 C 1.42903 * 116.99626 * 0.29117 * 25 24 23 27 27 H 1.07999 * 120.00570 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99949 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46785 * 4.99208 * 3 2 1 31 31 H 1.09003 * 109.47236 * 245.00158 * 3 2 1 32 32 H 1.09004 * 109.46645 * 29.99803 * 5 4 3 33 33 H 1.08995 * 109.47432 * 150.00015 * 5 4 3 34 34 H 0.96994 * 120.00057 * 180.02562 * 9 8 6 35 35 H 0.96996 * 119.99499 * 4.49516 * 16 14 4 36 36 H 1.07993 * 120.76088 * 0.03262 * 18 17 16 37 37 H 1.08004 * 120.34940 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.47277 * 60.00140 * 22 21 20 39 39 H 1.09006 * 109.46943 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47114 * 299.99665 * 22 21 20 41 41 H 1.09000 * 109.47359 * 299.99400 * 26 25 24 42 42 H 1.08997 * 109.47711 * 60.00066 * 26 25 24 43 43 H 1.09003 * 109.47055 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8651 2.4248 6 6 2.8442 3.3437 2.4802 7 1 3.3039 3.8370 1.6365 8 6 2.5194 4.0667 3.6083 9 7 1.9600 3.4660 4.6360 10 14 2.8737 5.8995 3.6773 11 1 3.5025 6.3304 2.4029 12 1 1.6036 6.6420 3.8791 13 1 3.7974 6.1830 4.8050 14 6 4.2496 0.8661 0.9824 15 8 5.0216 0.8880 1.9216 16 7 4.6497 0.3752 -0.2074 17 6 5.9276 -0.1910 -0.3393 18 6 7.0003 0.3143 0.3867 19 6 8.2439 -0.2751 0.2248 20 6 8.3804 -1.3428 -0.6501 21 8 9.5959 -1.9249 -0.8128 22 6 9.6734 -3.0205 -1.7270 23 7 7.3403 -1.8017 -1.3276 24 6 6.1366 -1.2697 -1.1955 25 8 5.0962 -1.7758 -1.9057 26 6 5.3754 -2.8819 -2.7664 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 1.4887 1.6968 2.5458 33 1 3.0989 1.3605 3.2259 34 1 1.7312 3.9747 5.4295 35 1 4.0561 0.4167 -0.9734 36 1 6.8673 1.1470 1.0613 37 1 9.0981 0.0935 0.7735 38 1 9.3733 -2.6868 -2.7203 39 1 10.6976 -3.3919 -1.7630 40 1 9.0088 -3.8182 -1.3954 41 1 6.1195 -2.5877 -3.5065 42 1 5.7592 -3.7139 -2.1760 43 1 4.4602 -3.1876 -3.2736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590111047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -48.550256 kcal Electronic energy + Delta-G solvation = -27313.286561 eV Core-core repulsion = 23360.265149 eV Total energy + Delta-G solvation = -3953.021412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28757 -41.07289 -39.87566 -38.25769 -37.25791 -35.95457 -34.94373 -33.74400 -32.90700 -30.84857 -29.25845 -28.75747 -27.37246 -26.89647 -25.21897 -24.18779 -23.71469 -21.40360 -20.74539 -19.97473 -19.47567 -18.72926 -18.51148 -18.33190 -17.41774 -16.97469 -16.84785 -16.50741 -16.32581 -16.01157 -15.95903 -15.69244 -14.87584 -14.74976 -14.60624 -14.34896 -14.13236 -14.08864 -14.03836 -13.29115 -13.09633 -12.89484 -12.83749 -12.60201 -12.59433 -12.55638 -12.26281 -12.18247 -12.00411 -11.63339 -11.45167 -11.25343 -10.88803 -10.61476 -10.41036 -10.33001 -9.53323 -8.71251 -8.17927 -6.32656 0.05632 0.14281 1.25734 1.39385 1.41880 1.53471 1.75016 1.91046 2.14009 2.16291 2.41740 2.69171 3.00130 3.11824 3.20356 3.83476 3.97623 4.09278 4.22363 4.25063 4.35512 4.43855 4.45029 4.46927 4.49337 4.63604 4.77051 4.77673 4.79207 4.93139 4.97588 5.05569 5.19146 5.26413 5.52971 5.56041 5.71166 5.75698 5.80934 5.90988 6.04916 6.09692 6.31601 6.57923 6.76400 7.02075 7.33999 7.61901 8.88612 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003610 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.007369 B = 7754.873846 C = 9310.001695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.135 3.865 4 N -0.606 5.606 5 C 0.281 3.719 6 C -0.539 4.539 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.283 1.283 14 C 0.698 3.302 15 O -0.617 6.617 16 N -0.662 5.662 17 C 0.055 3.945 18 C -0.026 4.026 19 C -0.204 4.204 20 C 0.332 3.668 21 O -0.311 6.311 22 C 0.035 3.965 23 N -0.570 5.570 24 C 0.335 3.665 25 O -0.310 6.310 26 C 0.037 3.963 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.026 0.974 33 H 0.000 1.000 34 H 0.266 0.734 35 H 0.417 0.583 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.060 0.940 39 H 0.124 0.876 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -12.977 -18.797 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.339 5.339 5 C 0.160 3.840 6 C -0.578 4.578 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.209 1.209 14 C 0.400 3.600 15 O -0.498 6.498 16 N -0.314 5.314 17 C -0.043 4.043 18 C -0.053 4.053 19 C -0.225 4.225 20 C 0.154 3.846 21 O -0.218 6.218 22 C -0.059 4.059 23 N -0.310 5.310 24 C 0.154 3.846 25 O -0.217 6.217 26 C -0.057 4.057 27 H 0.134 0.866 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.044 0.956 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.257 0.743 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.647 -13.483 -18.403 24.061 hybrid contribution -0.304 1.187 0.547 1.342 sum 7.344 -12.295 -17.856 22.890 Atomic orbital electron populations 1.24045 0.95324 1.02992 0.97792 1.23279 0.96910 0.98004 1.02319 1.20763 0.92769 0.96767 0.88446 1.47388 1.09617 1.62924 1.14017 1.18654 0.93868 0.92509 0.78965 1.21742 1.40353 0.94374 1.01342 0.92756 1.25811 0.94739 1.03536 0.94865 1.70060 1.42948 1.37966 1.05785 0.85384 0.78110 0.79271 0.78113 1.19157 1.19580 1.20880 1.16046 0.82847 0.78539 0.82610 1.90833 1.54015 1.63662 1.41250 1.42289 1.15159 1.62862 1.11135 1.17469 0.86334 0.96647 1.03815 1.21477 0.89756 0.98314 0.95747 1.21001 0.98971 0.98823 1.03711 1.19422 0.84112 0.90318 0.90730 1.86279 1.24617 1.48306 1.62593 1.23101 1.04500 0.86515 0.91824 1.66791 0.99184 1.34533 1.30451 1.19008 0.85583 0.88360 0.91695 1.86248 1.30360 1.49476 1.55608 1.23114 1.04168 0.86085 0.92339 0.86621 0.87916 0.87540 0.89516 0.88739 0.95601 0.98219 0.92467 0.74285 0.83682 0.81996 0.92137 0.85795 0.92559 0.91859 0.92571 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 14.32 67.78 0.97 -2.96 16 2 C -0.19 -5.13 9.85 25.65 0.25 -4.88 16 3 C 0.13 4.29 5.65 85.63 0.48 4.78 16 4 N -0.61 -26.22 2.44 -848.58 -2.07 -28.29 16 5 C 0.28 15.19 5.16 85.63 0.44 15.63 16 6 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.54 5.46 84.65 0.46 1.00 16 9 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 10 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 C 0.70 30.51 8.14 179.05 1.46 31.97 16 15 O -0.62 -32.32 13.37 -4.03 -0.05 -32.37 16 16 N -0.66 -22.48 5.08 -316.35 -1.61 -24.09 16 17 C 0.06 1.83 6.36 38.21 0.24 2.07 16 18 C -0.03 -0.87 8.81 22.54 0.20 -0.67 16 19 C -0.20 -5.77 10.03 22.46 0.23 -5.55 16 20 C 0.33 8.89 7.48 84.73 0.63 9.52 16 21 O -0.31 -7.07 10.48 -90.75 -0.95 -8.02 16 22 C 0.04 0.52 10.38 113.37 1.18 1.70 16 23 N -0.57 -15.02 8.06 -421.47 -3.40 -18.41 16 24 C 0.33 9.49 7.50 84.88 0.64 10.13 16 25 O -0.31 -7.40 10.05 -90.78 -0.91 -8.31 16 26 C 0.04 0.58 10.38 113.37 1.18 1.76 16 27 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.10 2.40 7.84 -2.91 -0.02 2.37 16 29 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.09 2.84 7.72 -2.38 -0.02 2.82 16 31 H 0.09 2.42 6.30 -2.39 -0.02 2.41 16 32 H 0.03 1.42 8.07 -2.38 -0.02 1.40 16 33 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.42 11.67 6.28 -92.71 -0.58 11.09 16 36 H 0.15 5.66 6.27 -2.91 -0.02 5.64 16 37 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 39 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 42 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 43 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.82 371.41 2.37 -71.45 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.45 Total: 22.93 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 8.60 Total: 33.88 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.79 Total: -126.40 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.92 Total: -48.71 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.82 2.37 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590111047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.902 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds