Wall clock time and date at job start Tue Mar 31 2020 13:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37653 * 125.67462 * 2 1 4 4 C 1.46676 * 126.23634 * 359.94039 * 3 2 1 5 5 O 1.21698 * 119.99557 * 21.55164 * 4 3 2 6 6 N 1.34776 * 120.00573 * 201.54401 * 4 3 2 7 7 C 1.46927 * 120.62396 * 6.13799 * 6 4 3 8 8 C 1.53627 * 108.53996 * 126.37354 * 7 6 4 9 9 C 1.53040 * 109.24370 * 54.84930 * 8 7 6 10 10 C 1.53002 * 109.44738 * 178.49662 * 9 8 7 11 11 C 1.50699 * 109.47591 * 295.06768 * 10 9 8 12 12 H 1.08003 * 119.99445 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00245 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00043 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99889 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47042 * 90.00025 * 15 13 11 17 17 H 1.48499 * 109.46901 * 209.99621 * 15 13 11 18 18 H 1.48497 * 109.46991 * 329.99666 * 15 13 11 19 19 C 1.53037 * 109.53960 * 298.51274 * 9 8 7 20 20 C 1.46917 * 120.63301 * 186.42168 * 6 4 3 21 21 C 1.37876 * 107.53102 * 179.97438 * 3 2 1 22 22 C 1.39829 * 107.08492 * 359.77895 * 21 3 2 23 23 C 1.35447 * 107.86612 * 0.35981 * 22 21 3 24 24 N 1.48025 * 125.56524 * 179.90048 * 23 22 21 25 25 O 1.21805 * 120.00489 * 179.69486 * 24 23 22 26 26 O 1.21800 * 120.00209 * 359.41634 * 24 23 22 27 27 H 1.08996 * 109.47379 * 264.52404 * 1 2 3 28 28 H 1.09004 * 109.47640 * 24.53172 * 1 2 3 29 29 H 1.09005 * 109.47312 * 144.52616 * 1 2 3 30 30 H 1.09000 * 109.58264 * 246.19940 * 7 6 4 31 31 H 1.08998 * 109.58956 * 6.62614 * 7 6 4 32 32 H 1.09002 * 109.62776 * 294.85759 * 8 7 6 33 33 H 1.08999 * 109.43124 * 174.72847 * 8 7 6 34 34 H 1.09002 * 109.45570 * 58.53910 * 9 8 7 35 35 H 1.09002 * 109.46881 * 55.06277 * 10 9 8 36 36 H 1.08993 * 109.46898 * 175.06081 * 10 9 8 37 37 H 0.97002 * 120.00367 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.50036 * 301.41203 * 19 9 8 39 39 H 1.09003 * 109.49466 * 181.31694 * 19 9 8 40 40 H 1.09004 * 109.58881 * 353.37055 * 20 6 4 41 41 H 1.09000 * 109.59347 * 113.65453 * 20 6 4 42 42 H 1.07996 * 126.45537 * 180.02562 * 21 3 2 43 43 H 1.07999 * 126.06848 * 180.26413 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8123 2.5125 -0.0012 5 8 0.6912 2.7867 0.3848 6 7 2.6353 3.4900 -0.4297 7 6 3.9393 3.1639 -1.0230 8 6 4.0367 3.8485 -2.3949 9 6 3.7789 5.3480 -2.2297 10 6 3.9117 6.0403 -3.5877 11 6 5.3348 5.9297 -4.0709 12 1 6.0710 5.4172 -3.4694 13 6 5.6970 6.4827 -5.2809 14 7 6.9390 6.3865 -5.7023 15 14 4.4234 7.3684 -6.3215 16 1 4.3974 8.8069 -5.9539 17 1 4.7752 7.2309 -7.7577 18 1 3.0852 6.7716 -6.0803 19 6 2.3669 5.5672 -1.6816 20 6 2.2483 4.9019 -0.3068 21 6 3.5779 0.6889 0.0006 22 6 3.5521 -0.7092 0.0061 23 6 2.2555 -1.1009 0.0006 24 7 1.7795 -2.5025 0.0016 25 8 0.5849 -2.7401 0.0019 26 8 2.5824 -3.4184 -0.0030 27 1 -0.3634 -0.0981 1.0229 28 1 -0.3634 0.9349 -0.4267 29 1 -0.3634 -0.8369 -0.5964 30 1 4.7368 3.5254 -0.3738 31 1 4.0257 2.0842 -1.1449 32 1 3.2936 3.4237 -3.0697 33 1 5.0338 3.6940 -2.8073 34 1 4.5072 5.7674 -1.5356 35 1 3.2459 5.5620 -4.3060 36 1 3.6427 7.0917 -3.4872 37 1 7.1939 6.7759 -6.5534 38 1 1.6395 5.1263 -2.3632 39 1 2.1756 6.6361 -1.5863 40 1 1.2185 4.9693 0.0441 41 1 2.9090 5.4017 0.4016 42 1 4.4582 1.3145 0.0011 43 1 4.4132 -1.3610 0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592819803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:40 Heat of formation + Delta-G solvation = 24.112827 kcal Electronic energy + Delta-G solvation = -27296.369029 eV Core-core repulsion = 23346.498525 eV Total energy + Delta-G solvation = -3949.870504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.95753 -41.78030 -39.90039 -37.65196 -36.97226 -34.63758 -33.53209 -32.39725 -31.62236 -30.44851 -28.83813 -27.36355 -26.72904 -24.98147 -23.30832 -22.78665 -21.70523 -21.24912 -20.10736 -19.27974 -18.97654 -18.82123 -18.06675 -17.16150 -16.86217 -16.49185 -16.18525 -15.10056 -15.03331 -14.62951 -14.35588 -14.26096 -13.89845 -13.87848 -13.31824 -13.18885 -13.07229 -12.88014 -12.79766 -12.39621 -12.06643 -11.88463 -11.60929 -11.56187 -11.50275 -11.24831 -11.07520 -10.77467 -10.48576 -10.37526 -9.94557 -9.83591 -9.67252 -9.54982 -9.31117 -9.15223 -8.70878 -8.61273 -6.12368 -4.10422 -0.33280 0.62841 1.00504 1.89414 1.94840 2.72097 2.81974 3.24101 3.32780 3.35196 3.94463 4.12483 4.27299 4.37904 4.72269 4.77285 4.86150 5.03997 5.09478 5.16443 5.17710 5.20634 5.22263 5.28774 5.42389 5.50863 5.55911 5.68182 5.73525 5.77908 5.97803 6.06748 6.11701 6.25364 6.25663 6.37334 6.64030 6.72016 6.81115 7.10388 7.13987 7.30409 7.32831 7.70878 7.72994 8.44115 8.91351 9.50685 11.00662 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002921 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.344422 B = 9582.028510 C =10278.777512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.382 5.382 3 C 0.042 3.958 4 C 0.581 3.419 5 O -0.542 6.542 6 N -0.581 5.581 7 C 0.069 3.931 8 C -0.119 4.119 9 C -0.074 4.074 10 C -0.009 4.009 11 C -0.518 4.518 12 H 0.074 0.926 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.133 4.133 20 C 0.114 3.886 21 C -0.160 4.160 22 C -0.089 4.089 23 C 0.059 3.941 24 N 0.061 4.939 25 O -0.176 6.176 26 O -0.136 6.136 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.187 0.813 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 -11.274 13.268 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.058 5.058 3 C -0.079 4.079 4 C 0.368 3.632 5 O -0.421 6.421 6 N -0.313 5.313 7 C -0.052 4.052 8 C -0.157 4.157 9 C -0.092 4.092 10 C -0.047 4.047 11 C -0.556 4.556 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.171 4.171 20 C -0.007 4.007 21 C -0.184 4.184 22 C -0.117 4.117 23 C -0.138 4.138 24 N 0.578 4.422 25 O -0.385 6.385 26 O -0.353 6.353 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.204 0.796 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.776 -10.450 13.316 19.547 hybrid contribution -0.693 0.154 -0.751 1.034 sum -10.470 -10.296 12.565 19.326 Atomic orbital electron populations 1.22680 0.73613 1.06682 1.05503 1.43689 1.08273 1.02810 1.50996 1.20668 0.90177 0.87631 1.09395 1.16769 0.84802 0.82808 0.78806 1.90829 1.18970 1.83250 1.49065 1.47876 1.18832 1.06277 1.58295 1.23002 0.83286 1.02592 0.96330 1.21998 1.04053 0.95822 0.93866 1.21034 0.93878 0.94942 0.99371 1.19613 0.97970 0.95021 0.92052 1.21106 0.93628 1.36284 1.04589 0.90795 1.25021 0.95014 0.95781 0.97615 1.69902 1.17050 1.45822 1.21359 0.86825 0.82596 0.80442 0.79672 1.20350 1.21445 1.19132 1.22079 0.99450 1.00472 0.95071 1.21792 1.01832 0.78474 0.98613 1.22022 0.96001 0.93893 1.06529 1.20920 0.93457 0.96020 1.01304 1.20833 0.90784 0.78280 1.23866 1.42516 1.00740 1.01170 0.97785 1.94546 0.99282 1.89962 1.54710 1.94592 1.52290 1.35112 1.53258 0.89041 0.87274 0.87893 0.90363 0.87694 0.92266 0.88752 0.91502 0.96712 0.96992 0.92721 0.91942 0.90719 0.89254 0.90862 0.79610 0.80791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 9.84 59.84 0.59 1.12 16 2 N -0.38 -4.27 3.16 -116.62 -0.37 -4.64 16 3 C 0.04 0.47 6.54 -81.98 -0.54 -0.07 16 4 C 0.58 7.37 7.51 -12.85 -0.10 7.28 16 5 O -0.54 -8.04 14.53 5.19 0.08 -7.96 16 6 N -0.58 -6.96 2.97 -174.04 -0.52 -7.47 16 7 C 0.07 0.76 5.19 -3.48 -0.02 0.74 16 8 C -0.12 -1.78 5.20 -26.38 -0.14 -1.92 16 9 C -0.07 -1.22 2.10 -90.58 -0.19 -1.41 16 10 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 11 C -0.52 -13.46 8.94 -34.44 -0.31 -13.77 16 12 H 0.07 2.03 7.30 -52.48 -0.38 1.65 16 13 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 14 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 15 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 19 C -0.13 -1.84 5.36 -26.61 -0.14 -1.98 16 20 C 0.11 1.37 6.44 -3.71 -0.02 1.34 16 21 C -0.16 -1.43 8.54 -39.12 -0.33 -1.76 16 22 C -0.09 -0.81 10.46 -39.98 -0.42 -1.23 16 23 C 0.06 0.65 7.87 -144.06 -1.13 -0.48 16 24 N 0.06 0.74 4.45 33.00 0.15 0.89 16 25 O -0.18 -2.21 16.79 -29.46 -0.49 -2.70 16 26 O -0.14 -1.69 19.00 -29.46 -0.56 -2.25 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.11 1.09 6.60 -51.93 -0.34 0.75 16 29 H 0.10 0.91 6.54 -51.93 -0.34 0.57 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 0.98 3.65 -51.93 -0.19 0.79 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.19 1.23 5.69 -52.49 -0.30 0.93 16 43 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -31.15 347.91 -8.91 -40.06 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.59 Total: -0.89 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.95 Total: -10.68 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.04 Total: -37.01 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.98 Total: -12.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.15 -8.91 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.171 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds