Wall clock time and date at job start Tue Mar 31 2020 13:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37653 * 125.67462 * 2 1 4 4 C 1.46676 * 126.23634 * 359.94039 * 3 2 1 5 5 O 1.21698 * 119.99557 * 21.55164 * 4 3 2 6 6 N 1.34776 * 120.00573 * 201.54401 * 4 3 2 7 7 C 1.46927 * 120.62396 * 6.13799 * 6 4 3 8 8 C 1.53627 * 108.53996 * 126.37354 * 7 6 4 9 9 C 1.53040 * 109.24370 * 54.84930 * 8 7 6 10 10 C 1.53002 * 109.44738 * 178.49662 * 9 8 7 11 11 C 1.50699 * 109.47591 * 295.06768 * 10 9 8 12 12 H 1.08003 * 119.99445 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00245 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00043 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99889 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47042 * 90.00025 * 15 13 11 17 17 H 1.48499 * 109.46901 * 209.99621 * 15 13 11 18 18 H 1.48497 * 109.46991 * 329.99666 * 15 13 11 19 19 C 1.53037 * 109.53960 * 298.51274 * 9 8 7 20 20 C 1.46917 * 120.63301 * 186.42168 * 6 4 3 21 21 C 1.37876 * 107.53102 * 179.97438 * 3 2 1 22 22 C 1.39829 * 107.08492 * 359.77895 * 21 3 2 23 23 C 1.35447 * 107.86612 * 0.35981 * 22 21 3 24 24 N 1.48025 * 125.56524 * 179.90048 * 23 22 21 25 25 O 1.21805 * 120.00489 * 179.69486 * 24 23 22 26 26 O 1.21800 * 120.00209 * 359.41634 * 24 23 22 27 27 H 1.08996 * 109.47379 * 264.52404 * 1 2 3 28 28 H 1.09004 * 109.47640 * 24.53172 * 1 2 3 29 29 H 1.09005 * 109.47312 * 144.52616 * 1 2 3 30 30 H 1.09000 * 109.58264 * 246.19940 * 7 6 4 31 31 H 1.08998 * 109.58956 * 6.62614 * 7 6 4 32 32 H 1.09002 * 109.62776 * 294.85759 * 8 7 6 33 33 H 1.08999 * 109.43124 * 174.72847 * 8 7 6 34 34 H 1.09002 * 109.45570 * 58.53910 * 9 8 7 35 35 H 1.09002 * 109.46881 * 55.06277 * 10 9 8 36 36 H 1.08993 * 109.46898 * 175.06081 * 10 9 8 37 37 H 0.97002 * 120.00367 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.50036 * 301.41203 * 19 9 8 39 39 H 1.09003 * 109.49466 * 181.31694 * 19 9 8 40 40 H 1.09004 * 109.58881 * 353.37055 * 20 6 4 41 41 H 1.09000 * 109.59347 * 113.65453 * 20 6 4 42 42 H 1.07996 * 126.45537 * 180.02562 * 21 3 2 43 43 H 1.07999 * 126.06848 * 180.26413 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8123 2.5125 -0.0012 5 8 0.6912 2.7867 0.3848 6 7 2.6353 3.4900 -0.4297 7 6 3.9393 3.1639 -1.0230 8 6 4.0367 3.8485 -2.3949 9 6 3.7789 5.3480 -2.2297 10 6 3.9117 6.0403 -3.5877 11 6 5.3348 5.9297 -4.0709 12 1 6.0710 5.4172 -3.4694 13 6 5.6970 6.4827 -5.2809 14 7 6.9390 6.3865 -5.7023 15 14 4.4234 7.3684 -6.3215 16 1 4.3974 8.8069 -5.9539 17 1 4.7752 7.2309 -7.7577 18 1 3.0852 6.7716 -6.0803 19 6 2.3669 5.5672 -1.6816 20 6 2.2483 4.9019 -0.3068 21 6 3.5779 0.6889 0.0006 22 6 3.5521 -0.7092 0.0061 23 6 2.2555 -1.1009 0.0006 24 7 1.7795 -2.5025 0.0016 25 8 0.5849 -2.7401 0.0019 26 8 2.5824 -3.4184 -0.0030 27 1 -0.3634 -0.0981 1.0229 28 1 -0.3634 0.9349 -0.4267 29 1 -0.3634 -0.8369 -0.5964 30 1 4.7368 3.5254 -0.3738 31 1 4.0257 2.0842 -1.1449 32 1 3.2936 3.4237 -3.0697 33 1 5.0338 3.6940 -2.8073 34 1 4.5072 5.7674 -1.5356 35 1 3.2459 5.5620 -4.3060 36 1 3.6427 7.0917 -3.4872 37 1 7.1939 6.7759 -6.5534 38 1 1.6395 5.1263 -2.3632 39 1 2.1756 6.6361 -1.5863 40 1 1.2185 4.9693 0.0441 41 1 2.9090 5.4017 0.4016 42 1 4.4582 1.3145 0.0011 43 1 4.4132 -1.3610 0.0120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592819803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:39 Heat of formation + Delta-G solvation = 7.784748 kcal Electronic energy + Delta-G solvation = -27297.077068 eV Core-core repulsion = 23346.498525 eV Total energy + Delta-G solvation = -3950.578543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.80259 -42.65655 -40.88185 -38.78492 -37.88957 -35.93946 -34.60109 -33.96945 -32.69081 -31.40496 -30.36201 -28.19585 -27.68734 -26.28153 -24.40038 -23.97427 -22.54702 -22.48040 -21.27830 -20.30759 -19.84134 -19.75960 -18.95829 -18.83645 -18.07346 -17.52045 -17.05893 -16.38412 -16.00649 -15.86893 -15.45173 -15.20464 -15.11279 -14.94229 -14.71098 -14.26282 -14.16604 -13.97201 -13.75040 -13.65492 -13.31982 -13.10129 -12.82762 -12.73081 -12.47532 -12.42590 -12.41924 -12.15887 -11.98989 -11.73332 -11.42774 -11.30071 -11.04086 -10.91411 -10.70143 -10.37257 -10.13417 -9.71747 -8.24012 -6.24746 -1.23222 -0.21323 0.15149 1.09471 1.15072 1.35282 1.38342 1.47722 1.82116 1.92362 2.38147 3.05779 3.12203 3.38998 3.50561 3.88504 3.97731 4.01021 4.05169 4.06175 4.15989 4.29195 4.40038 4.42702 4.55625 4.60627 4.63754 4.74661 4.79145 4.85083 4.86786 4.97198 5.09752 5.18710 5.24961 5.25933 5.34202 5.39932 5.41519 5.58401 5.74989 5.75720 6.15221 6.36177 6.37140 6.77715 6.83400 7.39379 8.91845 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002921 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.344422 B = 9582.028510 C =10278.777512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.392 5.392 3 C 0.027 3.973 4 C 0.582 3.418 5 O -0.568 6.568 6 N -0.581 5.581 7 C 0.079 3.921 8 C -0.117 4.117 9 C -0.071 4.071 10 C -0.009 4.009 11 C -0.512 4.512 12 H 0.048 0.952 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.937 3.063 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.253 1.253 19 C -0.124 4.124 20 C 0.118 3.882 21 C -0.145 4.145 22 C -0.077 4.077 23 C 0.044 3.956 24 N 0.061 4.939 25 O -0.195 6.195 26 O -0.140 6.140 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.013 0.987 37 H 0.263 0.737 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.214 0.786 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 -11.281 14.389 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.068 5.068 3 C -0.094 4.094 4 C 0.370 3.630 5 O -0.449 6.449 6 N -0.311 5.311 7 C -0.042 4.042 8 C -0.155 4.155 9 C -0.090 4.090 10 C -0.047 4.047 11 C -0.550 4.550 12 H 0.066 0.934 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.762 3.238 16 H -0.195 1.195 17 H -0.217 1.217 18 H -0.177 1.177 19 C -0.162 4.162 20 C -0.003 4.003 21 C -0.170 4.170 22 C -0.105 4.105 23 C -0.152 4.152 24 N 0.575 4.425 25 O -0.401 6.401 26 O -0.357 6.357 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.230 0.770 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.203 -10.469 14.450 20.555 hybrid contribution -0.502 0.150 -1.078 1.199 sum -10.706 -10.318 13.372 19.997 Atomic orbital electron populations 1.22688 0.73361 1.06435 1.05910 1.43815 1.08691 1.02902 1.51391 1.20658 0.91105 0.86999 1.10597 1.16924 0.84363 0.83391 0.78318 1.90819 1.20045 1.83722 1.50272 1.47901 1.18969 1.06247 1.58025 1.23022 0.83523 1.03436 0.94234 1.21884 1.02284 0.95136 0.96199 1.20953 0.95865 0.95513 0.96628 1.19599 0.94731 0.95670 0.94681 1.21473 0.95357 1.34337 1.03831 0.93383 1.25876 0.96778 0.97151 0.99332 1.70045 1.19187 1.47873 1.22083 0.85851 0.80641 0.79561 0.77707 1.19529 1.21663 1.17652 1.21963 0.96962 1.01385 0.95922 1.21770 1.02484 0.78470 0.97575 1.22359 0.95804 0.94011 1.04801 1.21357 0.93359 0.96415 0.99365 1.21058 0.91539 0.77580 1.25065 1.42668 1.00615 1.01712 0.97524 1.94542 0.99601 1.90306 1.55604 1.94575 1.52152 1.35724 1.53235 0.88471 0.87908 0.87537 0.88003 0.85680 0.93399 0.90980 0.91401 0.97328 0.96826 0.92845 0.92948 0.89744 0.89279 0.88818 0.76957 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 9.84 127.77 1.26 2.30 16 2 N -0.39 -8.19 3.16 -522.88 -1.65 -9.85 16 3 C 0.03 0.54 6.54 40.35 0.26 0.80 16 4 C 0.58 13.55 7.51 86.45 0.65 14.20 16 5 O -0.57 -16.08 14.53 -4.34 -0.06 -16.14 16 6 N -0.58 -12.33 2.97 -822.77 -2.44 -14.77 16 7 C 0.08 1.49 5.19 86.51 0.45 1.94 16 8 C -0.12 -3.33 5.20 30.82 0.16 -3.17 16 9 C -0.07 -2.25 2.10 -10.77 -0.02 -2.27 16 10 C -0.01 -0.40 3.52 29.85 0.10 -0.29 16 11 C -0.51 -26.78 8.94 25.60 0.23 -26.55 16 12 H 0.05 2.70 7.30 -2.91 -0.02 2.68 16 13 C 0.01 0.28 5.47 84.65 0.46 0.75 16 14 N -0.95 -57.08 13.96 21.45 0.30 -56.78 16 15 Si 0.94 42.86 27.47 68.60 1.88 44.74 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.25 -10.86 6.54 99.48 0.65 -10.20 16 19 C -0.12 -3.17 5.36 30.67 0.16 -3.01 16 20 C 0.12 2.51 6.44 86.37 0.56 3.07 16 21 C -0.15 -2.09 8.54 22.57 0.19 -1.89 16 22 C -0.08 -1.16 10.46 22.01 0.23 -0.93 16 23 C 0.04 0.90 7.87 127.91 1.01 1.90 16 24 N 0.06 1.42 4.45 -49.52 -0.22 1.20 16 25 O -0.20 -4.84 16.79 18.88 0.32 -4.52 16 26 O -0.14 -3.30 19.00 18.89 0.36 -2.94 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.04 6.60 -2.39 -0.02 2.02 16 29 H 0.11 1.86 6.54 -2.38 -0.02 1.85 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.13 1.88 3.65 -2.39 -0.01 1.87 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 2.38 6.91 -2.39 -0.02 2.36 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 36 H 0.01 0.56 7.57 -2.39 -0.02 0.55 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 1.96 7.00 -2.39 -0.02 1.95 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.21 1.82 5.69 -2.91 -0.02 1.80 16 43 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -68.21 347.91 5.18 -63.04 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.99 Total: 9.17 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.70 Total: -13.15 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -4.01 Total: -80.20 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.61 Total: -23.60 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -68.21 5.18 -63.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.821 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds