Wall clock time and date at job start Tue Mar 31 2020 13:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39904 * 120.00114 * 2 1 4 4 C 1.38722 * 120.09369 * 359.97438 * 3 2 1 5 5 C 1.38221 * 119.98639 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.19920 * 359.97438 * 5 4 3 7 7 N 1.48016 * 119.90053 * 180.02562 * 6 5 4 8 8 O 1.21799 * 120.00166 * 359.97438 * 7 6 5 9 9 O 1.21802 * 120.00354 * 179.97438 * 7 6 5 10 10 C 1.38231 * 120.19878 * 359.75736 * 6 5 4 11 11 C 1.38675 * 120.00287 * 0.51745 * 10 6 5 12 12 N 1.40149 * 120.09577 * 179.73830 * 11 10 6 13 13 C 1.34775 * 120.00268 * 34.68297 * 12 11 10 14 14 O 1.21299 * 119.99940 * 355.51705 * 13 12 11 15 15 C 1.50696 * 120.00264 * 175.51209 * 13 12 11 16 16 C 1.52997 * 109.47433 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47433 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47433 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47430 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99997 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00297 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00049 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47401 * 59.99901 * 23 21 19 25 25 H 1.48498 * 109.47003 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47236 * 299.99587 * 23 21 19 27 27 H 1.09004 * 109.46983 * 59.99935 * 1 2 3 28 28 H 1.08998 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46900 * 300.00230 * 1 2 3 30 30 H 0.96996 * 120.00411 * 179.97438 * 2 1 3 31 31 H 1.07996 * 120.00287 * 0.04317 * 4 3 2 32 32 H 1.08008 * 119.89749 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.00167 * 180.25617 * 10 6 5 34 34 H 0.97001 * 120.00163 * 214.67545 * 12 11 10 35 35 H 1.09003 * 109.47587 * 300.00137 * 15 13 12 36 36 H 1.09009 * 109.47065 * 59.99991 * 15 13 12 37 37 H 1.09000 * 109.47090 * 300.00135 * 16 15 13 38 38 H 1.08997 * 109.47416 * 60.00131 * 16 15 13 39 39 H 1.09003 * 109.47280 * 299.99935 * 17 16 15 40 40 H 1.09000 * 109.47518 * 59.99515 * 17 16 15 41 41 H 1.09000 * 109.47090 * 299.99759 * 18 17 16 42 42 H 1.09005 * 109.47265 * 60.00027 * 18 17 16 43 43 H 0.97000 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1645 1.2116 0.0000 4 6 1.4729 2.4141 -0.0005 5 6 2.1663 3.6098 -0.0011 6 6 3.5491 3.6120 -0.0005 7 7 4.2849 4.8963 -0.0005 8 8 3.6724 5.9491 -0.0015 9 8 5.5029 4.9004 0.0004 10 6 4.2463 2.4184 0.0056 11 6 3.5591 1.2139 0.0004 12 7 4.2640 0.0026 0.0010 13 6 5.4297 -0.0984 0.6699 14 8 5.9097 0.8797 1.2032 15 6 6.1368 -1.4264 0.7555 16 6 7.4256 -1.2668 1.5644 17 6 8.1438 -2.6150 1.6507 18 6 9.4323 -2.4556 2.4601 19 6 10.1401 -3.7834 2.5446 20 1 9.7133 -4.6540 2.0689 21 6 11.3319 -3.8870 3.2301 22 7 11.8514 -2.8269 3.8097 23 14 12.2088 -5.5330 3.3353 24 1 12.5395 -6.0061 1.9671 25 1 13.4594 -5.3782 4.1209 26 1 11.3248 -6.5230 4.0013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 0.3930 2.4159 -0.0003 32 1 1.6263 4.5453 -0.0019 33 1 5.3263 2.4239 0.0102 34 1 3.9129 -0.7632 -0.4798 35 1 5.4882 -2.1525 1.2457 36 1 6.3784 -1.7747 -0.2488 37 1 8.0744 -0.5407 1.0746 38 1 7.1837 -0.9188 2.5685 39 1 7.4953 -3.3415 2.1402 40 1 8.3858 -2.9628 0.6464 41 1 10.0811 -1.7290 1.9710 42 1 9.1899 -2.1081 3.4644 43 1 12.6901 -2.8997 4.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592826766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:11 Heat of formation + Delta-G solvation = -25.624143 kcal Electronic energy + Delta-G solvation = -25832.600284 eV Core-core repulsion = 21880.573023 eV Total energy + Delta-G solvation = -3952.027261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16718 -41.08360 -39.31450 -36.50000 -36.35948 -35.36920 -34.89464 -32.72463 -31.14581 -30.85784 -29.41540 -27.55999 -25.88600 -25.41199 -23.75769 -22.29439 -21.99345 -20.62572 -20.08978 -19.62504 -18.73820 -18.26435 -17.47597 -17.16007 -16.87262 -16.45047 -16.16627 -15.85375 -15.12011 -14.76474 -14.73086 -14.49448 -14.13250 -14.06794 -13.68265 -13.37957 -12.89566 -12.70245 -12.40019 -12.29440 -11.79255 -11.67780 -11.52792 -11.24624 -11.15948 -11.09351 -11.02134 -10.83643 -10.61294 -10.57741 -10.48563 -10.05843 -9.67343 -9.29070 -9.20822 -9.03937 -8.32677 -8.16328 -5.97229 -4.00307 -0.17757 0.59954 1.26417 1.42641 2.31106 2.41013 2.69167 3.03819 3.33297 3.38198 3.39871 4.02351 4.30461 4.35918 4.44635 4.46974 4.49326 4.65166 4.73668 4.99297 5.06869 5.08758 5.16167 5.18298 5.37832 5.37980 5.50778 5.64801 5.68221 6.01739 6.02325 6.17905 6.29194 6.43466 6.46620 6.73218 6.74608 6.88216 6.95187 7.14428 7.68610 7.70545 7.83739 7.85986 8.03381 8.44501 9.07112 9.63440 11.14023 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002231 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.415460 B =12546.655603 C =14102.343267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.241 3.759 4 C -0.184 4.184 5 C -0.019 4.019 6 C -0.085 4.085 7 N 0.039 4.961 8 O -0.178 6.178 9 O -0.163 6.163 10 C -0.016 4.016 11 C 0.079 3.921 12 N -0.677 5.677 13 C 0.511 3.489 14 O -0.507 6.507 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.109 4.109 18 C 0.020 3.980 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.404 0.596 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.409 0.591 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.139 6.294 -11.586 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C 0.132 3.868 4 C -0.207 4.207 5 C -0.040 4.040 6 C -0.172 4.172 7 N 0.555 4.445 8 O -0.390 6.390 9 O -0.378 6.378 10 C -0.038 4.038 11 C -0.020 4.020 12 N -0.325 5.325 13 C 0.300 3.700 14 O -0.379 6.379 15 C -0.175 4.175 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.017 4.017 19 C -0.561 4.561 20 H 0.072 0.928 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.245 0.755 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.166 6.410 -11.051 31.841 hybrid contribution 0.650 -1.327 -0.097 1.481 sum -28.515 5.084 -11.148 31.036 Atomic orbital electron populations 1.21724 0.78731 1.03469 1.01884 1.44594 1.06602 1.04998 1.80260 1.17971 0.89256 0.87611 0.91949 1.20403 1.00448 0.89006 1.10890 1.20749 0.90883 0.99928 0.92447 1.20620 0.92094 0.83566 1.20894 1.43464 1.01244 1.02585 0.97179 1.94491 1.69818 1.20199 1.54446 1.94588 0.95379 1.94255 1.53616 1.20915 1.03146 0.88121 0.91660 1.16855 0.88248 0.86598 1.10331 1.43543 1.23970 1.11718 1.53302 1.21479 0.79583 0.92461 0.76457 1.90755 1.63909 1.38994 1.44276 1.21830 0.99173 0.92645 1.03836 1.21502 0.93220 0.99976 0.99680 1.21644 0.98800 0.93794 1.00474 1.19089 0.90734 0.96952 0.94941 1.21224 1.06181 0.95342 1.33354 0.92838 1.25043 0.97438 0.96437 0.95617 1.69959 1.19678 1.28702 1.35000 0.86668 0.79001 0.84296 0.78069 1.20278 1.21284 1.20310 0.92063 0.89997 0.92082 0.76067 0.83418 0.82965 0.81179 0.75505 0.88683 0.88555 0.91449 0.91603 0.93474 0.93382 0.96508 0.96583 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 9.95 59.85 0.60 0.73 16 2 N -0.74 -2.82 5.87 -65.23 -0.38 -3.20 16 3 C 0.24 1.64 6.67 -83.54 -0.56 1.08 16 4 C -0.18 -1.14 9.31 -39.41 -0.37 -1.51 16 5 C -0.02 -0.16 9.54 -39.57 -0.38 -0.54 16 6 C -0.09 -1.01 6.85 -79.93 -0.55 -1.56 16 7 N 0.04 0.57 4.45 33.97 0.15 0.72 16 8 O -0.18 -2.55 18.44 -29.46 -0.54 -3.10 16 9 O -0.16 -2.69 18.44 -29.46 -0.54 -3.23 16 10 C -0.02 -0.20 8.21 -39.42 -0.32 -0.52 16 11 C 0.08 0.74 6.33 -83.44 -0.53 0.21 16 12 N -0.68 -5.51 5.02 -9.71 -0.05 -5.56 16 13 C 0.51 6.10 7.68 -10.99 -0.08 6.01 16 14 O -0.51 -8.34 13.41 5.54 0.07 -8.27 16 15 C -0.14 -1.50 5.70 -27.89 -0.16 -1.66 16 16 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 17 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 18 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 19 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.06 0.07 7.95 -51.93 -0.41 -0.35 16 28 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 0.10 7.95 -51.93 -0.41 -0.31 16 30 H 0.40 1.03 7.44 -40.82 -0.30 0.73 16 31 H 0.15 0.49 6.74 -52.49 -0.35 0.13 16 32 H 0.15 1.02 7.60 -52.48 -0.40 0.62 16 33 H 0.17 2.50 5.74 -52.48 -0.30 2.19 16 34 H 0.41 1.75 7.72 -40.82 -0.32 1.44 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -36.41 369.59 -9.00 -45.41 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.84 Total: -3.22 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.16 Total: -15.17 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.46 Total: -34.69 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.01 Total: -14.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.41 -9.00 -45.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592826766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.789 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds