Wall clock time and date at job start Tue Mar 31 2020 13:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39904 * 120.00114 * 2 1 4 4 C 1.38722 * 120.09369 * 359.97438 * 3 2 1 5 5 C 1.38221 * 119.98639 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.19920 * 359.97438 * 5 4 3 7 7 N 1.48016 * 119.90053 * 180.02562 * 6 5 4 8 8 O 1.21799 * 120.00166 * 359.97438 * 7 6 5 9 9 O 1.21802 * 120.00354 * 179.97438 * 7 6 5 10 10 C 1.38231 * 120.19878 * 359.75736 * 6 5 4 11 11 C 1.38675 * 120.00287 * 0.51745 * 10 6 5 12 12 N 1.40149 * 120.09577 * 179.73830 * 11 10 6 13 13 C 1.34775 * 120.00268 * 34.68297 * 12 11 10 14 14 O 1.21299 * 119.99940 * 355.51705 * 13 12 11 15 15 C 1.50696 * 120.00264 * 175.51209 * 13 12 11 16 16 C 1.52997 * 109.47433 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47433 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47433 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47430 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99997 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00297 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00049 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47401 * 59.99901 * 23 21 19 25 25 H 1.48498 * 109.47003 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47236 * 299.99587 * 23 21 19 27 27 H 1.09004 * 109.46983 * 59.99935 * 1 2 3 28 28 H 1.08998 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46900 * 300.00230 * 1 2 3 30 30 H 0.96996 * 120.00411 * 179.97438 * 2 1 3 31 31 H 1.07996 * 120.00287 * 0.04317 * 4 3 2 32 32 H 1.08008 * 119.89749 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.00167 * 180.25617 * 10 6 5 34 34 H 0.97001 * 120.00163 * 214.67545 * 12 11 10 35 35 H 1.09003 * 109.47587 * 300.00137 * 15 13 12 36 36 H 1.09009 * 109.47065 * 59.99991 * 15 13 12 37 37 H 1.09000 * 109.47090 * 300.00135 * 16 15 13 38 38 H 1.08997 * 109.47416 * 60.00131 * 16 15 13 39 39 H 1.09003 * 109.47280 * 299.99935 * 17 16 15 40 40 H 1.09000 * 109.47518 * 59.99515 * 17 16 15 41 41 H 1.09000 * 109.47090 * 299.99759 * 18 17 16 42 42 H 1.09005 * 109.47265 * 60.00027 * 18 17 16 43 43 H 0.97000 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1645 1.2116 0.0000 4 6 1.4729 2.4141 -0.0005 5 6 2.1663 3.6098 -0.0011 6 6 3.5491 3.6120 -0.0005 7 7 4.2849 4.8963 -0.0005 8 8 3.6724 5.9491 -0.0015 9 8 5.5029 4.9004 0.0004 10 6 4.2463 2.4184 0.0056 11 6 3.5591 1.2139 0.0004 12 7 4.2640 0.0026 0.0010 13 6 5.4297 -0.0984 0.6699 14 8 5.9097 0.8797 1.2032 15 6 6.1368 -1.4264 0.7555 16 6 7.4256 -1.2668 1.5644 17 6 8.1438 -2.6150 1.6507 18 6 9.4323 -2.4556 2.4601 19 6 10.1401 -3.7834 2.5446 20 1 9.7133 -4.6540 2.0689 21 6 11.3319 -3.8870 3.2301 22 7 11.8514 -2.8269 3.8097 23 14 12.2088 -5.5330 3.3353 24 1 12.5395 -6.0061 1.9671 25 1 13.4594 -5.3782 4.1209 26 1 11.3248 -6.5230 4.0013 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 0.3930 2.4159 -0.0003 32 1 1.6263 4.5453 -0.0019 33 1 5.3263 2.4239 0.0102 34 1 3.9129 -0.7632 -0.4798 35 1 5.4882 -2.1525 1.2457 36 1 6.3784 -1.7747 -0.2488 37 1 8.0744 -0.5407 1.0746 38 1 7.1837 -0.9188 2.5685 39 1 7.4953 -3.3415 2.1402 40 1 8.3858 -2.9628 0.6464 41 1 10.0811 -1.7290 1.9710 42 1 9.1899 -2.1081 3.4644 43 1 12.6901 -2.8997 4.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592826766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:10 Heat of formation + Delta-G solvation = -50.502836 kcal Electronic energy + Delta-G solvation = -25833.679105 eV Core-core repulsion = 21880.573023 eV Total energy + Delta-G solvation = -3953.106082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16829 -41.90922 -40.14389 -37.58875 -36.89937 -36.74111 -35.97107 -34.65057 -32.09127 -31.74863 -30.70138 -28.14070 -27.55448 -26.07235 -24.97420 -23.53004 -22.84278 -21.83290 -21.46711 -20.50491 -19.72898 -18.93520 -18.52368 -18.43209 -17.96265 -17.60903 -17.19692 -16.75714 -16.50445 -15.84820 -15.40132 -15.32563 -15.18092 -15.01574 -14.54504 -14.30734 -14.00018 -13.73207 -13.63052 -13.39232 -13.21705 -12.80258 -12.76528 -12.63835 -12.38997 -12.27916 -12.26991 -12.18858 -12.15715 -11.89558 -11.47193 -11.37523 -11.36703 -11.19318 -10.87608 -10.55182 -9.89622 -8.70916 -8.19140 -6.31753 -1.11585 -0.09310 0.37999 0.53610 1.39786 1.43202 1.43854 1.51780 1.75516 2.14789 2.34918 2.41432 3.13633 3.38489 3.53766 3.68570 3.81595 3.88089 4.02954 4.12079 4.31948 4.41828 4.50159 4.63780 4.66354 4.69928 4.72756 4.80437 4.82727 4.85070 4.98968 5.05806 5.16449 5.25308 5.32398 5.37796 5.40760 5.56161 5.77273 5.87621 5.89507 6.20351 6.24355 6.40403 6.56730 6.87313 7.01483 7.38179 8.92982 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002231 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.415460 B =12546.655603 C =14102.343267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.718 5.718 3 C 0.264 3.736 4 C -0.171 4.171 5 C -0.008 4.008 6 C -0.115 4.115 7 N 0.044 4.956 8 O -0.161 6.161 9 O -0.247 6.247 10 C -0.038 4.038 11 C 0.064 3.936 12 N -0.654 5.654 13 C 0.510 3.490 14 O -0.563 6.563 15 C -0.122 4.122 16 C -0.100 4.100 17 C -0.094 4.094 18 C 0.017 3.983 19 C -0.542 4.542 20 H 0.068 0.932 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.287 1.287 26 H -0.263 1.263 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.413 0.587 31 H 0.191 0.809 32 H 0.173 0.827 33 H 0.132 0.868 34 H 0.431 0.569 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.063 0.937 41 H -0.018 1.018 42 H -0.017 1.017 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.719 2.850 -12.916 36.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.344 5.344 3 C 0.151 3.849 4 C -0.195 4.195 5 C -0.028 4.028 6 C -0.202 4.202 7 N 0.551 4.449 8 O -0.381 6.381 9 O -0.443 6.443 10 C -0.061 4.061 11 C -0.035 4.035 12 N -0.303 5.303 13 C 0.300 3.700 14 O -0.440 6.440 15 C -0.161 4.161 16 C -0.139 4.139 17 C -0.131 4.131 18 C -0.020 4.020 19 C -0.579 4.579 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.213 1.213 26 H -0.187 1.187 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.250 0.750 31 H 0.208 0.792 32 H 0.190 0.810 33 H 0.150 0.850 34 H 0.271 0.729 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -33.678 2.865 -12.426 36.012 hybrid contribution 1.776 -0.338 0.318 1.836 sum -31.902 2.527 -12.108 34.216 Atomic orbital electron populations 1.22057 0.76566 1.05362 1.02869 1.44876 1.07960 1.04214 1.77308 1.18025 0.88054 0.89247 0.89582 1.20835 1.02158 0.87536 1.08973 1.21089 0.89029 1.01901 0.90812 1.20794 0.93243 0.81690 1.24520 1.43883 1.01033 1.03597 0.96379 1.94411 1.69390 1.21511 1.52800 1.94588 0.96828 1.94774 1.58105 1.20722 1.01725 0.89869 0.93750 1.16877 0.89459 0.85746 1.11454 1.43190 1.22695 1.12156 1.52258 1.21608 0.80302 0.91961 0.76093 1.90772 1.65544 1.40758 1.46938 1.21694 0.96634 0.92951 1.04814 1.21284 0.95646 0.97531 0.99393 1.21428 0.95928 0.95739 1.00042 1.19067 0.93535 0.95424 0.93989 1.21736 1.06627 0.96401 1.33183 0.91340 1.26121 0.98535 1.00800 0.95097 1.70133 1.20253 1.31542 1.36060 0.85429 0.77519 0.79000 0.78667 1.18851 1.21276 1.18739 0.90620 0.87912 0.91384 0.75041 0.79229 0.80999 0.84976 0.72880 0.85086 0.85419 0.94039 0.93888 0.91677 0.91832 0.99978 0.99870 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.21 9.95 127.77 1.27 1.06 16 2 N -0.72 -1.75 5.87 -360.29 -2.12 -3.87 16 3 C 0.26 2.61 6.67 38.26 0.26 2.87 16 4 C -0.17 -1.41 9.31 22.38 0.21 -1.21 16 5 C -0.01 -0.11 9.54 22.28 0.21 0.10 16 6 C -0.11 -2.85 6.85 36.38 0.25 -2.60 16 7 N 0.04 1.40 4.45 -46.44 -0.21 1.20 16 8 O -0.16 -4.83 18.44 18.89 0.35 -4.48 16 9 O -0.25 -9.42 18.44 18.88 0.35 -9.08 16 10 C -0.04 -0.99 8.21 22.37 0.18 -0.81 16 11 C 0.06 1.12 6.33 38.21 0.24 1.37 16 12 N -0.65 -9.44 5.02 -303.03 -1.52 -10.96 16 13 C 0.51 12.07 7.68 87.66 0.67 12.74 16 14 O -0.56 -20.06 13.41 -3.09 -0.04 -20.10 16 15 C -0.12 -2.47 5.70 29.85 0.17 -2.30 16 16 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 17 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 18 C 0.02 0.92 4.97 29.85 0.15 1.07 16 19 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 20 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 21 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 22 N -0.94 -59.54 13.29 21.45 0.28 -59.25 16 23 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 27 H 0.08 -0.32 7.95 -2.38 -0.02 -0.34 16 28 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.07 -0.19 7.95 -2.39 -0.02 -0.21 16 30 H 0.41 -0.11 7.44 -92.71 -0.69 -0.80 16 31 H 0.19 0.02 6.74 -2.91 -0.02 0.00 16 32 H 0.17 1.82 7.60 -2.91 -0.02 1.80 16 33 H 0.13 4.51 5.74 -2.91 -0.02 4.49 16 34 H 0.43 2.08 7.72 -92.71 -0.72 1.36 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 43 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -89.18 369.59 3.38 -85.80 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -0.35 Total: -0.48 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 4.60 Total: -25.36 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -3.56 Total: -72.89 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: 0.66 Total: -33.66 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -89.18 3.38 -85.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592826766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.298 kcal (2) G-P(sol) polarization free energy of solvation -89.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds