Wall clock time and date at job start Tue Mar 31 2020 13:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47075 * 2 1 4 4 C 1.34724 * 116.99526 * 180.02562 * 3 2 1 5 5 O 1.21486 * 120.00531 * 359.97438 * 4 3 2 6 6 C 1.47619 * 119.99751 * 179.97438 * 4 3 2 7 7 C 1.39683 * 120.09189 * 6.08911 * 6 4 3 8 8 C 1.38441 * 119.79027 * 180.27030 * 7 6 4 9 9 N 1.39871 * 120.00595 * 179.70427 * 8 7 6 10 10 C 1.46498 * 120.00095 * 354.68915 * 9 8 7 11 11 C 1.53000 * 109.47159 * 184.91583 * 10 9 8 12 12 C 1.50698 * 115.55206 * 320.72280 * 11 10 9 13 13 H 1.07997 * 120.00117 * 119.11898 * 12 11 10 14 14 C 1.37876 * 119.99787 * 299.12821 * 12 11 10 15 15 N 1.31513 * 119.99654 * 173.56287 * 14 12 11 16 16 Si 1.86799 * 120.00412 * 353.56515 * 14 12 11 17 17 H 1.48503 * 109.47099 * 87.89781 * 16 14 12 18 18 H 1.48502 * 109.47343 * 207.90061 * 16 14 12 19 19 H 1.48499 * 109.46882 * 327.90088 * 16 14 12 20 20 C 1.52999 * 117.49783 * 175.05567 * 11 10 9 21 21 C 1.53001 * 60.03270 * 252.49690 * 20 11 10 22 22 C 1.39298 * 119.98278 * 359.43643 * 8 7 6 23 23 F 1.35095 * 119.90129 * 180.25167 * 22 8 7 24 24 C 1.38442 * 120.19223 * 0.27168 * 22 8 7 25 25 C 1.37943 * 120.20908 * 0.02562 * 24 22 8 26 26 C 1.50697 * 119.99550 * 180.02562 * 25 24 22 27 27 H 1.09007 * 109.46946 * 60.00068 * 1 2 3 28 28 H 1.08993 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47045 * 300.00634 * 1 2 3 30 30 H 1.09000 * 109.47226 * 240.00104 * 2 1 3 31 31 H 1.08997 * 109.46971 * 120.00013 * 2 1 3 32 32 H 1.07998 * 120.10822 * 359.97438 * 7 6 4 33 33 H 0.96996 * 120.00389 * 174.69024 * 9 8 7 34 34 H 1.09001 * 109.47288 * 64.91731 * 10 9 8 35 35 H 1.09001 * 109.47063 * 304.91524 * 10 9 8 36 36 H 0.97001 * 120.00133 * 179.97438 * 15 14 12 37 37 H 1.08998 * 117.50109 * 359.97438 * 20 11 10 38 38 H 1.09008 * 117.50158 * 145.00082 * 20 11 10 39 39 H 1.09001 * 117.49538 * 107.49819 * 21 20 11 40 40 H 1.09002 * 117.49912 * 252.51974 * 21 20 11 41 41 H 1.08003 * 119.89361 * 180.02562 * 24 22 8 42 42 H 1.08991 * 109.47549 * 96.88686 * 26 25 24 43 43 H 1.08997 * 109.46833 * 216.89367 * 26 25 24 44 44 H 1.09005 * 109.46952 * 336.88145 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9139 2.9095 -0.0011 7 6 3.0712 4.0161 0.1270 8 6 3.6065 5.2928 0.1201 9 7 2.7662 6.4043 0.2419 10 6 1.3123 6.2250 0.2598 11 6 0.6297 7.5942 0.2774 12 6 1.2928 8.6401 1.1361 13 1 1.6642 9.5501 0.6886 14 6 1.4255 8.4350 2.4931 15 7 2.1141 9.2857 3.2223 16 14 0.6272 6.9492 3.2957 17 1 1.5589 5.7943 3.2365 18 1 0.3145 7.2607 4.7136 19 1 -0.6264 6.6112 2.5751 20 6 -0.8969 7.6237 0.1806 21 6 -0.0468 8.0637 -1.0130 22 6 4.9827 5.4700 -0.0027 23 9 5.5038 6.7164 -0.0042 24 6 5.8179 4.3725 -0.1236 25 6 5.2924 3.0971 -0.1237 26 6 6.2061 1.9058 -0.2550 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0049 3.8764 0.2265 33 1 3.1460 7.2938 0.3145 34 1 1.0262 5.6649 1.1501 35 1 1.0030 5.6762 -0.6297 36 1 2.2072 9.1417 4.1771 37 1 -1.4150 6.6678 0.1039 38 1 -1.4217 8.3997 0.7379 39 1 -0.0055 7.3971 -1.8745 40 1 -0.0119 9.1291 -1.2406 41 1 6.8843 4.5154 -0.2181 42 1 6.4239 1.5041 0.7345 43 1 5.7199 1.1400 -0.8593 44 1 7.1354 2.2119 -0.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:10 Heat of formation + Delta-G solvation = -81.860478 kcal Electronic energy + Delta-G solvation = -27461.265957 eV Core-core repulsion = 23486.880144 eV Total energy + Delta-G solvation = -3974.385813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.53486 -40.66143 -38.93916 -37.48290 -36.61478 -34.74301 -32.29340 -32.13923 -30.96945 -30.65804 -27.35425 -25.67739 -25.25029 -23.94932 -22.88854 -21.69497 -21.61379 -20.46464 -19.28697 -18.09588 -17.04891 -16.91315 -16.72447 -16.57348 -16.07177 -15.43917 -15.08018 -14.90907 -14.38423 -14.30335 -14.00105 -13.62938 -13.57627 -13.31865 -13.21787 -13.13666 -12.88273 -12.78080 -12.50033 -12.19614 -12.10717 -11.91884 -11.74710 -11.72547 -11.18550 -10.97670 -10.81937 -10.65419 -10.61837 -10.31600 -10.11785 -9.76670 -9.59644 -9.23732 -8.79341 -8.77662 -8.55600 -6.94536 -6.26046 -4.29173 0.71640 1.55053 2.56334 2.59810 3.20788 3.31210 3.33511 3.79087 3.84718 4.30371 4.43080 4.60498 4.74795 4.78060 4.79901 4.81399 5.06320 5.07073 5.12511 5.31072 5.48506 5.58018 5.58629 5.66609 5.70587 5.77114 5.82647 5.84778 5.90845 5.99998 6.03775 6.08544 6.18640 6.25336 6.34825 6.38523 6.42951 6.57180 6.61852 6.77659 6.92083 7.04003 7.54579 7.73162 7.76839 8.28833 8.41085 8.77348 9.36598 10.84483 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011066 B = 0.004777 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.775349 B = 5859.994761 C = 7207.056744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.514 3.486 5 O -0.505 6.505 6 C -0.094 4.094 7 C -0.130 4.130 8 C 0.188 3.812 9 N -0.705 5.705 10 C 0.152 3.848 11 C -0.015 4.015 12 C -0.494 4.494 13 H 0.079 0.921 14 C 0.088 3.912 15 N -0.886 5.886 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.253 1.253 20 C -0.190 4.190 21 C -0.180 4.180 22 C 0.055 3.945 23 F -0.133 7.133 24 C -0.118 4.118 25 C -0.069 4.069 26 C -0.109 4.109 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.421 0.579 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -16.000 -7.215 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.269 6.269 4 C 0.361 3.639 5 O -0.395 6.395 6 C -0.096 4.096 7 C -0.154 4.154 8 C 0.078 3.922 9 N -0.333 5.333 10 C 0.028 3.972 11 C -0.016 4.016 12 C -0.531 4.531 13 H 0.097 0.903 14 C -0.116 4.116 15 N -0.522 5.522 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.177 1.177 20 C -0.228 4.228 21 C -0.217 4.217 22 C 0.030 3.970 23 F -0.111 7.111 24 C -0.138 4.138 25 C -0.072 4.072 26 C -0.165 4.165 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.158 0.842 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.193 -16.175 -7.010 17.669 hybrid contribution -0.271 -0.222 0.741 0.820 sum 0.922 -16.397 -6.269 17.579 Atomic orbital electron populations 1.21817 0.92606 1.02866 1.03826 1.23014 0.95392 0.80141 1.02498 1.86597 1.23998 1.32196 1.84154 1.21149 0.80378 0.89849 0.72553 1.90766 1.59742 1.42770 1.46259 1.18601 0.93071 0.89336 1.08606 1.20740 1.00481 0.89170 1.04986 1.17877 0.88791 0.89389 0.96149 1.45039 1.04755 1.06861 1.76632 1.21029 0.79761 0.97671 0.98767 1.19537 0.90906 0.93598 0.97588 1.20221 1.38515 1.03121 0.91273 0.90313 1.24906 0.93664 0.95971 0.97107 1.69888 1.38489 1.36803 1.06999 0.87040 0.81422 0.83540 0.78535 1.19981 1.21936 1.17719 1.23054 0.95945 1.01106 1.02674 1.22850 1.06827 1.00627 0.91358 1.17421 0.90130 0.80234 1.09197 1.91494 1.86725 1.38763 1.94152 1.20642 0.99841 0.90202 1.03101 1.19374 0.91881 0.94771 1.01197 1.20930 0.97306 0.95414 1.02867 0.91346 0.90292 0.91312 0.91233 0.91236 0.84043 0.73836 0.93480 0.93170 0.92300 0.91177 0.89323 0.90818 0.89660 0.84241 0.91196 0.89461 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.64 6.20 37.16 0.23 0.87 16 3 O -0.35 -4.75 9.49 -40.56 -0.38 -5.13 16 4 C 0.51 7.57 7.83 34.56 0.27 7.84 16 5 O -0.51 -7.70 13.11 -19.26 -0.25 -7.96 16 6 C -0.09 -1.44 5.87 -105.00 -0.62 -2.06 16 7 C -0.13 -2.13 8.86 -38.97 -0.35 -2.47 16 8 C 0.19 3.36 6.65 -83.72 -0.56 2.80 16 9 N -0.71 -14.01 5.56 -58.60 -0.33 -14.34 16 10 C 0.15 2.98 4.19 -4.04 -0.02 2.96 16 11 C -0.02 -0.32 1.21 -155.62 -0.19 -0.51 16 12 C -0.49 -12.69 7.94 -34.44 -0.27 -12.97 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.09 2.37 5.46 -17.82 -0.10 2.27 16 15 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 16 Si 0.87 20.62 24.79 -169.99 -4.21 16.41 16 17 H -0.27 -6.52 6.99 56.52 0.40 -6.13 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.25 -5.64 6.13 56.52 0.35 -5.30 16 20 C -0.19 -3.70 8.57 -26.73 -0.23 -3.93 16 21 C -0.18 -3.37 9.89 -26.69 -0.26 -3.64 16 22 C 0.05 0.92 7.32 -39.11 -0.29 0.64 16 23 F -0.13 -2.40 16.63 2.25 0.04 -2.36 16 24 C -0.12 -1.69 9.63 -39.61 -0.38 -2.07 16 25 C -0.07 -0.98 5.91 -104.20 -0.62 -1.60 16 26 C -0.11 -1.32 8.71 36.00 0.31 -1.00 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 2.25 6.32 -52.49 -0.33 1.92 16 33 H 0.42 9.14 6.82 -40.82 -0.28 8.87 16 34 H 0.05 0.96 5.06 -51.93 -0.26 0.70 16 35 H 0.05 0.87 7.71 -51.93 -0.40 0.47 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 39 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.14 1.62 8.05 -52.48 -0.42 1.20 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.13 5.86 -51.93 -0.30 0.82 16 44 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -28.41 363.86 -7.82 -36.22 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.26 Total: 10.21 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.67 Total: -13.68 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.45 Total: -39.19 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.64 Total: -13.09 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.21 Total: 16.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.41 -7.82 -36.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.637 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds