Wall clock time and date at job start Tue Mar 31 2020 13:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47075 * 2 1 4 4 C 1.34724 * 116.99526 * 180.02562 * 3 2 1 5 5 O 1.21486 * 120.00531 * 359.97438 * 4 3 2 6 6 C 1.47619 * 119.99751 * 179.97438 * 4 3 2 7 7 C 1.39683 * 120.09189 * 6.08911 * 6 4 3 8 8 C 1.38441 * 119.79027 * 180.27030 * 7 6 4 9 9 N 1.39871 * 120.00595 * 179.70427 * 8 7 6 10 10 C 1.46498 * 120.00095 * 354.68915 * 9 8 7 11 11 C 1.53000 * 109.47159 * 184.91583 * 10 9 8 12 12 C 1.50698 * 115.55206 * 320.72280 * 11 10 9 13 13 H 1.07997 * 120.00117 * 119.11898 * 12 11 10 14 14 C 1.37876 * 119.99787 * 299.12821 * 12 11 10 15 15 N 1.31513 * 119.99654 * 173.56287 * 14 12 11 16 16 Si 1.86799 * 120.00412 * 353.56515 * 14 12 11 17 17 H 1.48503 * 109.47099 * 87.89781 * 16 14 12 18 18 H 1.48502 * 109.47343 * 207.90061 * 16 14 12 19 19 H 1.48499 * 109.46882 * 327.90088 * 16 14 12 20 20 C 1.52999 * 117.49783 * 175.05567 * 11 10 9 21 21 C 1.53001 * 60.03270 * 252.49690 * 20 11 10 22 22 C 1.39298 * 119.98278 * 359.43643 * 8 7 6 23 23 F 1.35095 * 119.90129 * 180.25167 * 22 8 7 24 24 C 1.38442 * 120.19223 * 0.27168 * 22 8 7 25 25 C 1.37943 * 120.20908 * 0.02562 * 24 22 8 26 26 C 1.50697 * 119.99550 * 180.02562 * 25 24 22 27 27 H 1.09007 * 109.46946 * 60.00068 * 1 2 3 28 28 H 1.08993 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47045 * 300.00634 * 1 2 3 30 30 H 1.09000 * 109.47226 * 240.00104 * 2 1 3 31 31 H 1.08997 * 109.46971 * 120.00013 * 2 1 3 32 32 H 1.07998 * 120.10822 * 359.97438 * 7 6 4 33 33 H 0.96996 * 120.00389 * 174.69024 * 9 8 7 34 34 H 1.09001 * 109.47288 * 64.91731 * 10 9 8 35 35 H 1.09001 * 109.47063 * 304.91524 * 10 9 8 36 36 H 0.97001 * 120.00133 * 179.97438 * 15 14 12 37 37 H 1.08998 * 117.50109 * 359.97438 * 20 11 10 38 38 H 1.09008 * 117.50158 * 145.00082 * 20 11 10 39 39 H 1.09001 * 117.49538 * 107.49819 * 21 20 11 40 40 H 1.09002 * 117.49912 * 252.51974 * 21 20 11 41 41 H 1.08003 * 119.89361 * 180.02562 * 24 22 8 42 42 H 1.08991 * 109.47549 * 96.88686 * 26 25 24 43 43 H 1.08997 * 109.46833 * 216.89367 * 26 25 24 44 44 H 1.09005 * 109.46952 * 336.88145 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9139 2.9095 -0.0011 7 6 3.0712 4.0161 0.1270 8 6 3.6065 5.2928 0.1201 9 7 2.7662 6.4043 0.2419 10 6 1.3123 6.2250 0.2598 11 6 0.6297 7.5942 0.2774 12 6 1.2928 8.6401 1.1361 13 1 1.6642 9.5501 0.6886 14 6 1.4255 8.4350 2.4931 15 7 2.1141 9.2857 3.2223 16 14 0.6272 6.9492 3.2957 17 1 1.5589 5.7943 3.2365 18 1 0.3145 7.2607 4.7136 19 1 -0.6264 6.6112 2.5751 20 6 -0.8969 7.6237 0.1806 21 6 -0.0468 8.0637 -1.0130 22 6 4.9827 5.4700 -0.0027 23 9 5.5038 6.7164 -0.0042 24 6 5.8179 4.3725 -0.1236 25 6 5.2924 3.0971 -0.1237 26 6 6.2061 1.9058 -0.2550 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0049 3.8764 0.2265 33 1 3.1460 7.2938 0.3145 34 1 1.0262 5.6649 1.1501 35 1 1.0030 5.6762 -0.6297 36 1 2.2072 9.1417 4.1771 37 1 -1.4150 6.6678 0.1039 38 1 -1.4217 8.3997 0.7379 39 1 -0.0055 7.3971 -1.8745 40 1 -0.0119 9.1291 -1.2406 41 1 6.8843 4.5154 -0.2181 42 1 6.4239 1.5041 0.7345 43 1 5.7199 1.1400 -0.8593 44 1 7.1354 2.2119 -0.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594708464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:09 Heat of formation + Delta-G solvation = -96.647858 kcal Electronic energy + Delta-G solvation = -27461.907186 eV Core-core repulsion = 23486.880144 eV Total energy + Delta-G solvation = -3975.027042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89098 -41.76661 -40.18028 -38.96952 -37.72619 -36.09069 -34.32063 -33.01766 -32.18476 -31.73129 -28.74251 -27.48231 -26.54822 -25.02654 -23.92031 -23.16565 -22.74698 -21.66974 -21.00931 -19.33845 -18.49463 -18.28845 -17.89299 -17.65031 -17.51869 -16.96870 -16.67180 -16.11782 -15.82324 -15.36273 -15.30458 -15.17541 -14.82139 -14.65772 -14.55280 -14.35913 -14.15300 -13.90189 -13.61918 -13.54796 -13.13672 -13.04685 -12.97457 -12.80987 -12.60700 -12.50271 -12.24067 -12.13001 -12.07593 -11.51518 -11.44881 -11.20140 -11.07698 -11.02183 -10.63580 -10.27467 -9.99926 -8.34049 -8.31443 -6.37738 -0.49622 0.34155 1.31302 1.35787 1.39852 1.45461 1.60924 2.33036 2.42119 2.58164 2.99624 3.17471 3.33259 3.52405 3.69205 3.93037 4.02490 4.03977 4.08570 4.19105 4.29196 4.36280 4.43303 4.45019 4.54741 4.65800 4.68015 4.80966 4.85450 4.88365 4.92749 4.93169 4.94117 4.96573 5.03369 5.11641 5.22753 5.26880 5.37655 5.51053 5.52404 5.65204 5.72180 6.23366 6.35997 6.66706 6.68361 6.80017 7.30367 8.80967 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011066 B = 0.004777 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.775349 B = 5859.994761 C = 7207.056744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.516 3.484 5 O -0.513 6.513 6 C -0.101 4.101 7 C -0.128 4.128 8 C 0.166 3.834 9 N -0.723 5.723 10 C 0.161 3.839 11 C -0.045 4.045 12 C -0.481 4.481 13 H 0.034 0.966 14 C 0.039 3.961 15 N -0.939 5.939 16 Si 0.920 3.080 17 H -0.275 1.275 18 H -0.303 1.303 19 H -0.224 1.224 20 C -0.179 4.179 21 C -0.163 4.163 22 C 0.037 3.963 23 F -0.146 7.146 24 C -0.107 4.107 25 C -0.062 4.062 26 C -0.105 4.105 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.407 0.593 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.169 0.831 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 -19.214 -8.482 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.362 3.638 5 O -0.404 6.404 6 C -0.103 4.103 7 C -0.152 4.152 8 C 0.059 3.941 9 N -0.351 5.351 10 C 0.037 3.963 11 C -0.046 4.046 12 C -0.519 4.519 13 H 0.053 0.947 14 C -0.160 4.160 15 N -0.578 5.578 16 Si 0.746 3.254 17 H -0.201 1.201 18 H -0.231 1.231 19 H -0.147 1.147 20 C -0.217 4.217 21 C -0.200 4.200 22 C 0.012 3.988 23 F -0.125 7.125 24 C -0.126 4.126 25 C -0.065 4.065 26 C -0.161 4.161 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.244 0.756 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.187 0.813 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.432 -19.436 -8.312 21.143 hybrid contribution 0.025 0.739 1.037 1.274 sum 0.457 -18.697 -7.275 20.068 Atomic orbital electron populations 1.21849 0.90764 1.04451 1.03563 1.23344 0.96839 0.78646 1.03001 1.86589 1.23128 1.34268 1.83732 1.21011 0.80897 0.89400 0.72487 1.90762 1.60058 1.42850 1.46705 1.18815 0.93637 0.89559 1.08277 1.20778 1.00877 0.88796 1.04755 1.18074 0.89110 0.89368 0.97552 1.44957 1.05046 1.06689 1.78374 1.20962 0.79536 0.96251 0.99583 1.19500 0.92277 0.93723 0.99124 1.20312 1.37402 1.02559 0.91619 0.94738 1.25580 0.94288 0.98383 0.97755 1.70033 1.41312 1.39377 1.07089 0.86197 0.81686 0.80348 0.77164 1.20076 1.23067 1.14652 1.23077 0.94106 1.02247 1.02307 1.22904 1.04726 1.00809 0.91551 1.17758 0.90368 0.80463 1.10180 1.91460 1.86826 1.39783 1.94404 1.20932 1.01002 0.89258 1.01447 1.19729 0.91929 0.95509 0.99367 1.20949 0.97826 0.94164 1.03187 0.91308 0.87788 0.91815 0.90488 0.91013 0.83654 0.75553 0.94333 0.90442 0.92686 0.88094 0.90498 0.87743 0.90623 0.81335 0.90858 0.90068 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.29 71.98 0.74 -1.20 16 2 C 0.05 0.99 6.20 71.98 0.45 1.43 16 3 O -0.36 -8.96 9.49 -56.34 -0.53 -9.50 16 4 C 0.52 14.15 7.83 70.30 0.55 14.70 16 5 O -0.51 -14.53 13.11 19.88 0.26 -14.27 16 6 C -0.10 -2.90 5.87 -20.11 -0.12 -3.02 16 7 C -0.13 -4.03 8.86 22.67 0.20 -3.83 16 8 C 0.17 5.88 6.65 38.16 0.25 6.13 16 9 N -0.72 -28.79 5.56 -339.31 -1.89 -30.67 16 10 C 0.16 6.04 4.19 86.38 0.36 6.41 16 11 C -0.05 -1.89 1.21 -52.90 -0.06 -1.95 16 12 C -0.48 -25.46 7.94 25.60 0.20 -25.26 16 13 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 14 C 0.04 2.17 5.46 84.65 0.46 2.63 16 15 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 16 Si 0.92 42.80 24.79 68.60 1.70 44.51 16 17 H -0.27 -12.73 6.99 99.48 0.70 -12.03 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 19 H -0.22 -9.23 6.13 99.48 0.61 -8.62 16 20 C -0.18 -6.52 8.57 30.59 0.26 -6.26 16 21 C -0.16 -5.78 9.89 30.62 0.30 -5.48 16 22 C 0.04 1.22 7.32 22.57 0.17 1.38 16 23 F -0.15 -5.37 16.63 44.97 0.75 -4.62 16 24 C -0.11 -2.84 9.63 22.25 0.21 -2.63 16 25 C -0.06 -1.63 5.91 -19.59 -0.12 -1.74 16 26 C -0.11 -2.22 8.71 71.23 0.62 -1.60 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.15 4.37 6.32 -2.91 -0.02 4.36 16 33 H 0.41 18.33 6.82 -92.71 -0.63 17.70 16 34 H 0.04 1.50 5.06 -2.39 -0.01 1.49 16 35 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 39 H 0.10 3.09 8.08 -2.39 -0.02 3.07 16 40 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.17 3.40 8.05 -2.91 -0.02 3.37 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.87 5.86 -2.39 -0.01 1.86 16 44 H 0.08 1.33 8.03 -2.38 -0.02 1.32 16 Total: -1.00 -63.64 363.86 5.36 -58.28 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.29 Total: 33.10 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.49 Total: -20.29 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -1.59 Total: -87.21 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.27 Total: -23.77 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.75 Total: -4.62 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.70 Total: 44.51 kcal Total: -63.64 5.36 -58.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.368 kcal (2) G-P(sol) polarization free energy of solvation -63.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds