Wall clock time and date at job start Tue Mar 31 2020 13:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35946 * 116.99911 * 2 1 4 4 C 1.38720 * 120.03347 * 0.18669 * 3 2 1 5 5 C 1.38125 * 119.97080 * 180.23121 * 4 3 2 6 6 C 1.38476 * 120.03318 * 359.80831 * 5 4 3 7 7 F 1.35095 * 119.97514 * 179.97438 * 6 5 4 8 8 C 1.38437 * 120.05770 * 0.02562 * 6 5 4 9 9 C 1.38173 * 120.02822 * 359.95099 * 8 6 5 10 10 C 1.50699 * 120.01670 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47175 * 265.00334 * 10 9 8 12 12 O 1.21285 * 120.00033 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46928 * 120.63122 * 359.97369 * 13 11 10 15 15 C 1.53186 * 108.77793 * 233.62995 * 14 13 11 16 16 C 1.53033 * 109.31766 * 305.36832 * 15 14 13 17 17 C 1.53040 * 109.53924 * 61.36057 * 16 15 14 18 18 H 1.08997 * 109.49373 * 58.59287 * 17 16 15 19 19 C 1.50703 * 109.49783 * 178.68728 * 17 16 15 20 20 H 1.08000 * 119.99890 * 5.26413 * 19 17 16 21 21 C 1.37878 * 120.00008 * 185.26328 * 19 17 16 22 22 N 1.31518 * 120.00152 * 9.54438 * 21 19 17 23 23 Si 1.86796 * 120.00180 * 189.54621 * 21 19 17 24 24 H 1.48500 * 109.47486 * 94.98758 * 23 21 19 25 25 H 1.48499 * 109.47465 * 214.99213 * 23 21 19 26 26 H 1.48506 * 109.46935 * 334.99048 * 23 21 19 27 27 C 1.46924 * 120.63240 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.47498 * 300.00716 * 1 2 3 29 29 H 1.09007 * 109.46469 * 60.00239 * 1 2 3 30 30 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.01632 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.98702 * 179.79589 * 5 4 3 33 33 H 1.08002 * 119.98485 * 179.97438 * 8 6 5 34 34 H 1.08995 * 109.47162 * 144.99859 * 10 9 8 35 35 H 1.09003 * 109.46979 * 24.99934 * 10 9 8 36 36 H 1.08996 * 109.58489 * 353.41986 * 14 13 11 37 37 H 1.09002 * 109.58712 * 113.70036 * 14 13 11 38 38 H 1.09001 * 109.49804 * 65.31738 * 15 14 13 39 39 H 1.09000 * 109.49698 * 185.40935 * 15 14 13 40 40 H 1.09000 * 109.46601 * 181.38509 * 16 15 14 41 41 H 1.09004 * 109.45971 * 301.34548 * 16 15 14 42 42 H 0.96994 * 120.00247 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.58690 * 246.15677 * 27 13 11 44 44 H 1.09001 * 109.58835 * 6.58194 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0039 5 6 1.9197 3.6052 -0.0009 6 6 3.3026 3.6770 -0.0057 7 9 3.9160 4.8806 -0.0109 8 6 4.0572 2.5163 -0.0061 9 6 3.4311 1.2846 -0.0008 10 6 4.2528 0.0213 -0.0018 11 6 4.4167 -0.4702 -1.4169 12 8 3.9152 0.1446 -2.3343 13 7 5.1205 -1.5929 -1.6632 14 6 5.7344 -2.3481 -0.5625 15 6 7.2240 -2.5378 -0.8652 16 6 7.3820 -3.1908 -2.2402 17 6 6.7837 -2.2772 -3.3124 18 1 7.2858 -1.3101 -3.2878 19 6 6.9685 -2.9061 -4.6694 20 1 7.3859 -3.8988 -4.7522 21 6 6.6047 -2.2143 -5.8052 22 7 6.2746 -0.9438 -5.7239 23 14 6.5808 -3.0815 -7.4596 24 1 5.2066 -3.5674 -7.7439 25 1 7.0000 -2.1325 -8.5221 26 1 7.5167 -4.2340 -7.4279 27 6 5.2895 -2.0842 -3.0375 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2127 2.3195 0.0074 32 1 1.3322 4.5114 -0.0012 33 1 5.1356 2.5737 -0.0102 34 1 3.7479 -0.7410 0.5914 35 1 5.2336 0.2255 0.4277 36 1 5.6185 -1.7949 0.3695 37 1 5.2509 -3.3209 -0.4725 38 1 7.7220 -1.5682 -0.8636 39 1 7.6711 -3.1782 -0.1048 40 1 8.4403 -3.3494 -2.4476 41 1 6.8628 -4.1492 -2.2489 42 1 6.0191 -0.4571 -6.5230 43 1 4.7713 -3.0365 -3.1514 44 1 4.8800 -1.3569 -3.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:54 Heat of formation + Delta-G solvation = -100.193321 kcal Electronic energy + Delta-G solvation = -27523.712101 eV Core-core repulsion = 23548.531316 eV Total energy + Delta-G solvation = -3975.180785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.77637 -40.44167 -39.19631 -37.33014 -36.55818 -33.43707 -32.79003 -31.69447 -30.01486 -29.78763 -28.07496 -27.11537 -25.00580 -24.34542 -22.43935 -21.99048 -21.73197 -19.73272 -18.34665 -17.97252 -17.08783 -16.99429 -16.78027 -16.09580 -15.76617 -15.37233 -15.02971 -14.77500 -14.73228 -14.45233 -14.43755 -13.67420 -13.49716 -13.23724 -13.06842 -12.83567 -12.66078 -12.59373 -12.22972 -12.21018 -11.96671 -11.88426 -11.46780 -11.02000 -10.99030 -10.95031 -10.81924 -10.51648 -10.37591 -10.22894 -9.86630 -9.35522 -9.15140 -9.02328 -8.78236 -8.36727 -8.05219 -7.71667 -5.99986 -4.04621 1.09819 1.21673 3.16890 3.30775 3.33549 3.40341 3.42036 3.44163 3.87397 4.27447 4.45547 4.52615 4.63628 4.89242 4.98833 5.02965 5.11566 5.19805 5.31139 5.32888 5.34863 5.39620 5.43978 5.53707 5.63914 5.69689 5.83792 6.01705 6.04470 6.07322 6.19324 6.29134 6.33108 6.62052 6.65863 6.67991 6.86024 6.98348 7.13660 7.26188 7.28644 7.64844 7.88000 7.99922 8.25884 8.41095 8.92929 9.00594 9.59699 11.07889 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003523 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.919466 B = 7945.723881 C = 8253.257425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.135 3.865 4 C -0.182 4.182 5 C -0.117 4.117 6 C 0.060 3.940 7 F -0.143 7.143 8 C -0.101 4.101 9 C -0.060 4.060 10 C -0.096 4.096 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.608 5.608 14 C 0.109 3.891 15 C -0.135 4.135 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.035 0.965 19 C -0.524 4.524 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.877 5.877 23 Si 0.887 3.113 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.119 3.881 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.254 3.532 17.156 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.090 3.910 4 C -0.201 4.201 5 C -0.136 4.136 6 C 0.041 3.959 7 F -0.122 7.122 8 C -0.120 4.120 9 C -0.061 4.061 10 C -0.136 4.136 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.341 5.341 14 C -0.014 4.014 15 C -0.173 4.173 16 C -0.148 4.148 17 C 0.019 3.981 18 H 0.054 0.946 19 C -0.562 4.562 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.514 5.514 23 Si 0.715 3.285 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.001 4.001 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.483 3.859 16.534 19.447 hybrid contribution -0.167 -0.092 -0.996 1.014 sum -9.651 3.766 15.538 18.675 Atomic orbital electron populations 1.23072 0.78435 1.04088 1.01195 1.86113 1.21266 1.26343 1.88314 1.18746 0.91596 0.84479 0.96229 1.20979 1.00173 0.91312 1.07640 1.20835 0.92643 0.98549 1.01536 1.17446 0.90790 0.80481 1.07170 1.91476 1.83358 1.42923 1.94404 1.20838 1.00766 0.90073 1.00346 1.18505 0.90326 0.94343 1.02971 1.20583 1.00645 0.95381 0.97008 1.20199 0.79014 0.80847 0.90106 1.90715 1.48069 1.56028 1.46072 1.48438 1.51327 1.24872 1.09460 1.21637 0.94122 0.96251 0.89413 1.21955 0.95144 1.01186 0.98990 1.21615 1.00524 0.99015 0.93600 1.18972 0.90781 0.95714 0.92639 0.94643 1.21049 1.42990 1.01949 0.90225 0.92396 1.25035 0.95160 0.94526 0.99043 1.69983 1.44673 1.07386 1.29340 0.86661 0.78302 0.79581 0.83980 1.20651 1.21280 1.19865 1.22135 1.00267 0.98513 0.79196 0.92761 0.92501 0.88173 0.84618 0.84702 0.84091 0.87833 0.88241 0.91102 0.92018 0.92099 0.92220 0.92972 0.93297 0.92753 0.93918 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.14 9.64 -19.57 -0.19 -4.33 16 3 C 0.14 1.90 6.66 -39.24 -0.26 1.64 16 4 C -0.18 -2.16 9.04 -39.44 -0.36 -2.52 16 5 C -0.12 -1.40 10.02 -39.53 -0.40 -1.80 16 6 C 0.06 0.84 7.30 -39.42 -0.29 0.55 16 7 F -0.14 -2.02 17.27 2.25 0.04 -1.98 16 8 C -0.10 -1.45 9.66 -39.53 -0.38 -1.83 16 9 C -0.06 -0.89 4.39 -104.48 -0.46 -1.35 16 10 C -0.10 -1.39 3.89 -29.04 -0.11 -1.50 16 11 C 0.51 10.17 7.69 -10.99 -0.08 10.08 16 12 O -0.53 -13.09 15.45 5.55 0.09 -13.00 16 13 N -0.61 -12.00 2.97 -172.80 -0.51 -12.51 16 14 C 0.11 1.64 6.34 -3.71 -0.02 1.62 16 15 C -0.13 -2.10 6.08 -26.62 -0.16 -2.27 16 16 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 17 C 0.04 0.94 2.11 -91.67 -0.19 0.75 16 18 H 0.04 0.99 8.09 -51.93 -0.42 0.57 16 19 C -0.52 -14.27 8.48 -34.44 -0.29 -14.57 16 20 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 21 C 0.07 1.84 5.24 -17.82 -0.09 1.75 16 22 N -0.88 -26.07 12.20 55.43 0.68 -25.39 16 23 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.12 2.88 5.48 -3.73 -0.02 2.85 16 28 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 35 H 0.10 1.18 7.60 -51.93 -0.39 0.79 16 36 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 2.96 5.92 -51.93 -0.31 2.65 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -33.66 361.54 -8.04 -41.70 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.29 Total: 1.30 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.27 Total: -7.65 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.16 Total: -37.90 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.10 Total: -17.33 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.66 -8.04 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.495 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds