Wall clock time and date at job start Tue Mar 31 2020 13:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35946 * 116.99911 * 2 1 4 4 C 1.38720 * 120.03347 * 0.18669 * 3 2 1 5 5 C 1.38125 * 119.97080 * 180.23121 * 4 3 2 6 6 C 1.38476 * 120.03318 * 359.80831 * 5 4 3 7 7 F 1.35095 * 119.97514 * 179.97438 * 6 5 4 8 8 C 1.38437 * 120.05770 * 0.02562 * 6 5 4 9 9 C 1.38173 * 120.02822 * 359.95099 * 8 6 5 10 10 C 1.50699 * 120.01670 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47175 * 265.00334 * 10 9 8 12 12 O 1.21285 * 120.00033 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46928 * 120.63122 * 359.97369 * 13 11 10 15 15 C 1.53186 * 108.77793 * 233.62995 * 14 13 11 16 16 C 1.53033 * 109.31766 * 305.36832 * 15 14 13 17 17 C 1.53040 * 109.53924 * 61.36057 * 16 15 14 18 18 H 1.08997 * 109.49373 * 58.59287 * 17 16 15 19 19 C 1.50703 * 109.49783 * 178.68728 * 17 16 15 20 20 H 1.08000 * 119.99890 * 5.26413 * 19 17 16 21 21 C 1.37878 * 120.00008 * 185.26328 * 19 17 16 22 22 N 1.31518 * 120.00152 * 9.54438 * 21 19 17 23 23 Si 1.86796 * 120.00180 * 189.54621 * 21 19 17 24 24 H 1.48500 * 109.47486 * 94.98758 * 23 21 19 25 25 H 1.48499 * 109.47465 * 214.99213 * 23 21 19 26 26 H 1.48506 * 109.46935 * 334.99048 * 23 21 19 27 27 C 1.46924 * 120.63240 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.47498 * 300.00716 * 1 2 3 29 29 H 1.09007 * 109.46469 * 60.00239 * 1 2 3 30 30 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.01632 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.98702 * 179.79589 * 5 4 3 33 33 H 1.08002 * 119.98485 * 179.97438 * 8 6 5 34 34 H 1.08995 * 109.47162 * 144.99859 * 10 9 8 35 35 H 1.09003 * 109.46979 * 24.99934 * 10 9 8 36 36 H 1.08996 * 109.58489 * 353.41986 * 14 13 11 37 37 H 1.09002 * 109.58712 * 113.70036 * 14 13 11 38 38 H 1.09001 * 109.49804 * 65.31738 * 15 14 13 39 39 H 1.09000 * 109.49698 * 185.40935 * 15 14 13 40 40 H 1.09000 * 109.46601 * 181.38509 * 16 15 14 41 41 H 1.09004 * 109.45971 * 301.34548 * 16 15 14 42 42 H 0.96994 * 120.00247 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.58690 * 246.15677 * 27 13 11 44 44 H 1.09001 * 109.58835 * 6.58194 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0039 5 6 1.9197 3.6052 -0.0009 6 6 3.3026 3.6770 -0.0057 7 9 3.9160 4.8806 -0.0109 8 6 4.0572 2.5163 -0.0061 9 6 3.4311 1.2846 -0.0008 10 6 4.2528 0.0213 -0.0018 11 6 4.4167 -0.4702 -1.4169 12 8 3.9152 0.1446 -2.3343 13 7 5.1205 -1.5929 -1.6632 14 6 5.7344 -2.3481 -0.5625 15 6 7.2240 -2.5378 -0.8652 16 6 7.3820 -3.1908 -2.2402 17 6 6.7837 -2.2772 -3.3124 18 1 7.2858 -1.3101 -3.2878 19 6 6.9685 -2.9061 -4.6694 20 1 7.3859 -3.8988 -4.7522 21 6 6.6047 -2.2143 -5.8052 22 7 6.2746 -0.9438 -5.7239 23 14 6.5808 -3.0815 -7.4596 24 1 5.2066 -3.5674 -7.7439 25 1 7.0000 -2.1325 -8.5221 26 1 7.5167 -4.2340 -7.4279 27 6 5.2895 -2.0842 -3.0375 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2127 2.3195 0.0074 32 1 1.3322 4.5114 -0.0012 33 1 5.1356 2.5737 -0.0102 34 1 3.7479 -0.7410 0.5914 35 1 5.2336 0.2255 0.4277 36 1 5.6185 -1.7949 0.3695 37 1 5.2509 -3.3209 -0.4725 38 1 7.7220 -1.5682 -0.8636 39 1 7.6711 -3.1782 -0.1048 40 1 8.4403 -3.3494 -2.4476 41 1 6.8628 -4.1492 -2.2489 42 1 6.0191 -0.4571 -6.5230 43 1 4.7713 -3.0365 -3.1514 44 1 4.8800 -1.3569 -3.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:53 Heat of formation + Delta-G solvation = -120.840863 kcal Electronic energy + Delta-G solvation = -27524.607446 eV Core-core repulsion = 23548.531316 eV Total energy + Delta-G solvation = -3976.076130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.83401 -41.54072 -40.60023 -38.46731 -38.00872 -35.29718 -34.02980 -33.32211 -31.64181 -30.84911 -29.18884 -27.99635 -26.91558 -25.87666 -23.53922 -23.35740 -22.97376 -21.34677 -19.77173 -18.99779 -18.53773 -18.15369 -18.03656 -17.81530 -16.81975 -16.57370 -16.45142 -16.35106 -16.09183 -15.66148 -15.42254 -15.17474 -14.85706 -14.65388 -14.32758 -14.25698 -14.08392 -13.73604 -13.71007 -13.49958 -13.20120 -12.88061 -12.81788 -12.74482 -12.66187 -12.31012 -12.22325 -11.89070 -11.84300 -11.70688 -11.60817 -11.17488 -10.85944 -10.65070 -10.51671 -10.01188 -9.36764 -9.05577 -8.15622 -6.27378 0.10243 0.20364 1.38251 1.39863 1.50429 1.81625 2.19692 2.31924 2.41342 2.63290 3.16117 3.26463 3.54882 3.70007 3.82767 4.03158 4.12466 4.15775 4.21788 4.33092 4.37710 4.40703 4.42071 4.43864 4.62717 4.69803 4.71639 4.75331 4.82099 4.86687 4.93702 5.08294 5.10015 5.11728 5.22830 5.27610 5.32607 5.36236 5.57169 5.66956 5.70488 5.90307 5.94593 6.33786 6.36507 6.72110 6.86842 7.39670 7.42700 8.91537 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003523 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.919466 B = 7945.723881 C = 8253.257425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.124 3.876 4 C -0.180 4.180 5 C -0.111 4.111 6 C 0.039 3.961 7 F -0.149 7.149 8 C -0.114 4.114 9 C -0.087 4.087 10 C -0.081 4.081 11 C 0.503 3.497 12 O -0.592 6.592 13 N -0.612 5.612 14 C 0.103 3.897 15 C -0.128 4.128 16 C -0.105 4.105 17 C 0.037 3.963 18 H -0.011 1.011 19 C -0.537 4.537 20 H 0.062 0.938 21 C 0.012 3.988 22 N -0.917 5.917 23 Si 0.952 3.048 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.259 1.259 27 C 0.134 3.866 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.258 0.742 43 H 0.040 0.960 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 2.212 19.565 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.078 3.922 4 C -0.199 4.199 5 C -0.130 4.130 6 C 0.020 3.980 7 F -0.128 7.128 8 C -0.133 4.133 9 C -0.088 4.088 10 C -0.120 4.120 11 C 0.292 3.708 12 O -0.472 6.472 13 N -0.344 5.344 14 C -0.019 4.019 15 C -0.165 4.165 16 C -0.143 4.143 17 C 0.018 3.982 18 H 0.008 0.992 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.556 5.556 23 Si 0.778 3.222 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.183 1.183 27 C 0.011 3.989 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.261 2.500 18.992 21.731 hybrid contribution 0.038 0.311 -1.739 1.767 sum -10.223 2.810 17.253 20.250 Atomic orbital electron populations 1.23384 0.76303 1.05636 1.02425 1.86072 1.23585 1.26302 1.88212 1.19001 0.91747 0.85455 0.95966 1.21344 1.01711 0.90463 1.06354 1.21194 0.92073 0.99856 0.99830 1.17696 0.91764 0.80192 1.08389 1.91454 1.83608 1.43150 1.94585 1.20991 1.01219 0.90462 1.00622 1.18659 0.91162 0.94457 1.04511 1.20551 1.02585 0.95875 0.93001 1.21226 0.77616 0.79977 0.91969 1.90680 1.50407 1.57686 1.48466 1.48493 1.51594 1.25453 1.08858 1.22047 0.93263 0.97352 0.89202 1.21926 0.95979 1.01213 0.97425 1.21510 0.99855 0.98440 0.94476 1.18897 0.91136 0.94421 0.93780 0.99239 1.21525 1.42177 1.02016 0.91788 0.91973 1.25875 0.94933 0.94984 1.02972 1.70160 1.46292 1.09139 1.29961 0.85628 0.78552 0.78700 0.79354 1.20288 1.21353 1.18301 1.21513 0.99288 0.96771 0.81314 0.90131 0.92551 0.86651 0.81502 0.81933 0.83793 0.85240 0.85399 0.86733 0.90043 0.93044 0.87637 0.93255 0.92379 0.93270 0.94156 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -8.34 9.64 -92.94 -0.90 -9.23 16 3 C 0.12 3.35 6.66 22.49 0.15 3.50 16 4 C -0.18 -3.93 9.04 22.36 0.20 -3.73 16 5 C -0.11 -2.49 10.02 22.30 0.22 -2.26 16 6 C 0.04 1.06 7.30 22.37 0.16 1.22 16 7 F -0.15 -4.20 17.27 44.97 0.78 -3.43 16 8 C -0.11 -3.27 9.66 22.30 0.22 -3.05 16 9 C -0.09 -2.52 4.39 -19.77 -0.09 -2.60 16 10 C -0.08 -2.20 3.89 29.10 0.11 -2.08 16 11 C 0.50 20.15 7.69 87.66 0.67 20.83 16 12 O -0.59 -30.58 15.45 -3.05 -0.05 -30.62 16 13 N -0.61 -24.06 2.97 -818.99 -2.43 -26.50 16 14 C 0.10 2.75 6.34 86.36 0.55 3.29 16 15 C -0.13 -3.61 6.08 30.67 0.19 -3.43 16 16 C -0.11 -4.03 5.11 30.62 0.16 -3.87 16 17 C 0.04 1.88 2.11 -11.47 -0.02 1.86 16 18 H -0.01 -0.63 8.09 -2.39 -0.02 -0.65 16 19 C -0.54 -30.04 8.48 25.60 0.22 -29.82 16 20 H 0.06 3.34 7.77 -2.91 -0.02 3.32 16 21 C 0.01 0.69 5.24 84.65 0.44 1.13 16 22 N -0.92 -57.50 12.20 21.45 0.26 -57.24 16 23 Si 0.95 45.07 29.55 68.60 2.03 47.10 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.13 6.70 5.48 86.35 0.47 7.18 16 28 H 0.08 0.82 7.65 -2.39 -0.02 0.80 16 29 H 0.06 0.88 7.67 -2.38 -0.02 0.86 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.17 2.44 6.30 -2.91 -0.02 2.42 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.13 2.81 7.50 -2.39 -0.02 2.80 16 35 H 0.13 2.68 7.60 -2.39 -0.02 2.67 16 36 H 0.11 2.11 5.93 -2.39 -0.01 2.10 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 3.15 5.92 -2.39 -0.01 3.14 16 Total: -1.00 -80.16 361.54 5.46 -74.70 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.01 Total: 15.69 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 4.77 Total: -10.47 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.17 Total: -83.73 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.94 Total: -39.86 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -80.16 5.46 -74.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.143 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds