Wall clock time and date at job start Tue Mar 31 2020 13:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35289 * 116.99665 * 2 1 4 4 N 1.32806 * 120.59060 * 0.28470 * 3 2 1 5 5 C 1.31798 * 121.04708 * 180.28377 * 4 3 2 6 6 N 1.31791 * 122.29700 * 359.70711 * 5 4 3 7 7 C 1.32810 * 121.04590 * 359.97438 * 6 5 4 8 8 O 1.35288 * 120.58541 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99819 * 0.02562 * 8 7 6 10 10 C 1.40632 * 118.82763 * 359.97438 * 7 6 5 11 11 C 1.47221 * 121.02184 * 180.02562 * 10 7 6 12 12 O 1.21622 * 119.99785 * 89.99695 * 11 10 7 13 13 N 1.34766 * 120.00021 * 269.99891 * 11 10 7 14 14 C 1.46929 * 120.63348 * 0.02562 * 13 11 10 15 15 C 1.53196 * 108.77486 * 233.63046 * 14 13 11 16 16 C 1.53035 * 109.30995 * 305.36045 * 15 14 13 17 17 C 1.53042 * 109.54021 * 61.36728 * 16 15 14 18 18 H 1.09006 * 109.49541 * 58.58370 * 17 16 15 19 19 C 1.50693 * 109.49706 * 178.67875 * 17 16 15 20 20 H 1.08003 * 120.00311 * 359.97438 * 19 17 16 21 21 C 1.37879 * 120.00080 * 179.97438 * 19 17 16 22 22 N 1.31519 * 119.99559 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00509 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46814 * 60.00043 * 23 21 19 25 25 H 1.48497 * 109.47477 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46872 * 300.00461 * 23 21 19 27 27 C 1.46924 * 120.63242 * 180.02562 * 13 11 10 28 28 H 1.08996 * 109.46781 * 299.99925 * 1 2 3 29 29 H 1.08996 * 109.46879 * 59.99814 * 1 2 3 30 30 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.07998 * 118.84843 * 179.67895 * 5 4 3 32 32 H 1.09005 * 109.47025 * 179.97438 * 9 8 7 33 33 H 1.08992 * 109.47536 * 300.00073 * 9 8 7 34 34 H 1.09007 * 109.47298 * 60.00027 * 9 8 7 35 35 H 1.08998 * 109.59209 * 113.83860 * 14 13 11 36 36 H 1.09003 * 109.58217 * 353.41142 * 14 13 11 37 37 H 1.09001 * 109.49651 * 65.31212 * 15 14 13 38 38 H 1.09001 * 109.49244 * 185.40784 * 15 14 13 39 39 H 1.09004 * 109.45792 * 181.38956 * 16 15 14 40 40 H 1.09003 * 109.46450 * 301.35739 * 16 15 14 41 41 H 0.96999 * 119.99718 * 179.97438 * 22 21 19 42 42 H 1.08999 * 109.58511 * 6.58326 * 27 13 11 43 43 H 1.08999 * 109.58969 * 246.15926 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3313 2.3266 0.0057 5 6 1.9202 3.5057 0.0001 6 7 3.2314 3.6379 -0.0055 7 6 4.0271 2.5745 -0.0054 8 8 5.3720 2.7211 -0.0117 9 6 5.8789 4.0571 -0.0179 10 6 3.4468 1.2935 0.0015 11 6 4.2830 0.0818 0.0026 12 8 4.6326 -0.4148 1.0563 13 7 4.6611 -0.4769 -1.1640 14 6 4.2473 0.1118 -2.4450 15 6 3.5708 -0.9722 -3.2902 16 6 4.5130 -2.1706 -3.4246 17 6 4.8044 -2.7505 -2.0386 18 1 3.8691 -3.0497 -1.5654 19 6 5.7062 -3.9502 -2.1747 20 1 6.0383 -4.2680 -3.1521 21 6 6.1073 -4.6421 -1.0517 22 7 5.7025 -4.2554 0.1384 23 14 7.2257 -6.1288 -1.2203 24 1 8.5000 -5.7191 -1.8634 25 1 7.5080 -6.6911 0.1249 26 1 6.5578 -7.1583 -2.0565 27 6 5.4951 -1.6865 -1.1792 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.3067 4.3946 -0.0002 32 1 6.9687 4.0322 -0.0221 33 1 5.5236 4.5765 -0.9077 34 1 5.5313 4.5818 0.8722 35 1 5.1221 0.4930 -2.9717 36 1 3.5446 0.9250 -2.2633 37 1 2.6472 -1.2881 -2.8053 38 1 3.3452 -0.5740 -4.2795 39 1 4.0440 -2.9334 -4.0461 40 1 5.4463 -1.8489 -3.8869 41 1 5.9844 -4.7424 0.9285 42 1 5.6158 -2.0598 -0.1623 43 1 6.4716 -1.4518 -1.6028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:00 Heat of formation + Delta-G solvation = -54.111544 kcal Electronic energy + Delta-G solvation = -28606.106119 eV Core-core repulsion = 24652.843552 eV Total energy + Delta-G solvation = -3953.262568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56622 -39.31067 -39.04583 -37.92889 -36.56529 -33.39287 -32.82006 -32.11381 -31.43928 -29.68965 -28.12727 -27.03293 -25.81072 -24.97959 -23.82579 -23.28307 -21.77545 -20.18623 -19.34433 -18.68116 -18.46818 -17.09218 -16.69888 -16.56174 -15.99005 -15.83991 -15.65485 -15.28069 -14.51163 -14.32235 -14.26933 -13.91112 -13.80999 -13.64796 -13.37714 -12.77148 -12.56318 -12.33746 -12.06097 -11.99668 -11.95772 -11.82851 -11.51972 -11.26720 -10.95986 -10.88468 -10.49179 -10.36967 -10.19253 -9.84644 -9.79810 -9.76281 -9.39364 -9.10422 -8.90375 -8.79596 -8.38113 -7.67810 -5.94465 -4.03640 0.69309 1.04882 2.37576 3.02221 3.30334 3.35136 3.40984 3.42205 3.50382 3.74559 3.90722 3.98253 4.46624 4.71670 5.03984 5.12143 5.12552 5.13596 5.20983 5.25316 5.33712 5.36154 5.37542 5.48997 5.56150 5.66691 5.71484 6.02081 6.21536 6.35137 6.59195 6.63678 6.72942 6.86319 6.89348 7.01148 7.02410 7.20972 7.34188 7.68935 7.82538 7.92677 8.04817 8.29521 8.43474 8.89202 9.00803 9.61644 11.10731 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004296 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.706740 B = 6515.411579 C = 7047.302146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.279 6.279 3 C 0.415 3.585 4 N -0.593 5.593 5 C 0.375 3.625 6 N -0.594 5.594 7 C 0.413 3.587 8 O -0.284 6.284 9 C 0.038 3.962 10 C -0.259 4.259 11 C 0.579 3.421 12 O -0.523 6.523 13 N -0.591 5.591 14 C 0.117 3.883 15 C -0.132 4.132 16 C -0.109 4.109 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.115 3.885 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.206 0.794 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 17.571 -3.024 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.181 6.181 3 C 0.230 3.770 4 N -0.328 5.328 5 C 0.087 3.913 6 N -0.329 5.329 7 C 0.228 3.772 8 O -0.187 6.187 9 C -0.057 4.057 10 C -0.268 4.268 11 C 0.362 3.638 12 O -0.399 6.399 13 N -0.323 5.323 14 C -0.007 4.007 15 C -0.170 4.170 16 C -0.147 4.147 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.005 4.005 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.222 0.778 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.125 17.461 -2.254 19.390 hybrid contribution 0.743 -1.002 -0.110 1.253 sum -7.382 16.459 -2.364 18.193 Atomic orbital electron populations 1.23051 0.76052 1.03946 1.02650 1.86365 1.23675 1.22879 1.85171 1.19678 0.87192 0.85304 0.84779 1.68175 1.40768 0.98669 1.25190 1.24425 0.86920 0.94059 0.85901 1.68154 1.07227 1.32198 1.25324 1.19626 0.84843 0.87526 0.85207 1.86306 1.15104 1.31726 1.85557 1.23033 0.99498 0.80372 1.02777 1.19742 0.92423 0.95020 1.19633 1.17213 0.79769 0.82174 0.84598 1.90813 1.55767 1.62571 1.30778 1.48370 1.51091 1.28861 1.03956 1.21509 0.98402 0.95374 0.85425 1.21938 0.99740 0.97097 0.98263 1.21622 0.97353 0.95245 1.00490 1.18970 0.96789 0.92486 0.89576 0.95167 1.21029 1.30585 1.11452 0.92954 0.92426 1.25055 0.96133 0.97368 0.95419 1.69889 1.44162 1.39852 0.97739 0.86662 0.81170 0.83055 0.77124 1.20265 1.21282 1.20328 1.22331 0.90794 0.80919 1.06469 0.91777 0.91748 0.87790 0.77762 0.87946 0.91726 0.91759 0.92002 0.92574 0.92042 0.92393 0.92976 0.93177 0.92590 0.85898 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.41 101.05 1.05 1.48 16 2 O -0.28 -4.67 10.02 -17.56 -0.18 -4.84 16 3 C 0.42 6.79 7.39 -16.22 -0.12 6.67 16 4 N -0.59 -7.81 9.36 -14.36 -0.13 -7.95 16 5 C 0.37 4.11 12.26 -92.15 -1.13 2.98 16 6 N -0.59 -7.64 9.36 -14.37 -0.13 -7.77 16 7 C 0.41 6.53 7.54 -16.23 -0.12 6.41 16 8 O -0.28 -4.39 10.02 -17.56 -0.18 -4.57 16 9 C 0.04 0.38 10.41 101.05 1.05 1.44 16 10 C -0.26 -4.72 3.68 -104.44 -0.38 -5.11 16 11 C 0.58 13.03 6.40 -12.62 -0.08 12.95 16 12 O -0.52 -14.06 16.52 5.26 0.09 -13.97 16 13 N -0.59 -12.86 2.97 -174.10 -0.52 -13.37 16 14 C 0.12 2.04 6.34 -3.71 -0.02 2.02 16 15 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 16 C -0.11 -2.23 5.10 -26.69 -0.14 -2.37 16 17 C 0.04 1.03 2.25 -91.64 -0.21 0.83 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.52 -14.28 8.56 -34.44 -0.29 -14.58 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -26.05 11.40 55.43 0.63 -25.42 16 23 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 C 0.11 2.89 5.40 -3.70 -0.02 2.87 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.12 -51.92 -0.42 0.18 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.90 6.22 -51.93 -0.32 0.58 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 3.61 5.13 -51.93 -0.27 3.34 16 43 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -34.51 358.86 -6.75 -41.26 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.04 Total: -0.05 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -0.67 Total: 14.84 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.15 Total: -54.51 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.26 Total: -23.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.51 -6.75 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.849 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds