Wall clock time and date at job start Tue Mar 31 2020 13:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35289 * 116.99665 * 2 1 4 4 N 1.32806 * 120.59060 * 0.28470 * 3 2 1 5 5 C 1.31798 * 121.04708 * 180.28377 * 4 3 2 6 6 N 1.31791 * 122.29700 * 359.70711 * 5 4 3 7 7 C 1.32810 * 121.04590 * 359.97438 * 6 5 4 8 8 O 1.35288 * 120.58541 * 179.97438 * 7 6 5 9 9 C 1.42901 * 116.99819 * 0.02562 * 8 7 6 10 10 C 1.40632 * 118.82763 * 359.97438 * 7 6 5 11 11 C 1.47221 * 121.02184 * 180.02562 * 10 7 6 12 12 O 1.21622 * 119.99785 * 89.99695 * 11 10 7 13 13 N 1.34766 * 120.00021 * 269.99891 * 11 10 7 14 14 C 1.46929 * 120.63348 * 0.02562 * 13 11 10 15 15 C 1.53196 * 108.77486 * 233.63046 * 14 13 11 16 16 C 1.53035 * 109.30995 * 305.36045 * 15 14 13 17 17 C 1.53042 * 109.54021 * 61.36728 * 16 15 14 18 18 H 1.09006 * 109.49541 * 58.58370 * 17 16 15 19 19 C 1.50693 * 109.49706 * 178.67875 * 17 16 15 20 20 H 1.08003 * 120.00311 * 359.97438 * 19 17 16 21 21 C 1.37879 * 120.00080 * 179.97438 * 19 17 16 22 22 N 1.31519 * 119.99559 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00509 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46814 * 60.00043 * 23 21 19 25 25 H 1.48497 * 109.47477 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46872 * 300.00461 * 23 21 19 27 27 C 1.46924 * 120.63242 * 180.02562 * 13 11 10 28 28 H 1.08996 * 109.46781 * 299.99925 * 1 2 3 29 29 H 1.08996 * 109.46879 * 59.99814 * 1 2 3 30 30 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.07998 * 118.84843 * 179.67895 * 5 4 3 32 32 H 1.09005 * 109.47025 * 179.97438 * 9 8 7 33 33 H 1.08992 * 109.47536 * 300.00073 * 9 8 7 34 34 H 1.09007 * 109.47298 * 60.00027 * 9 8 7 35 35 H 1.08998 * 109.59209 * 113.83860 * 14 13 11 36 36 H 1.09003 * 109.58217 * 353.41142 * 14 13 11 37 37 H 1.09001 * 109.49651 * 65.31212 * 15 14 13 38 38 H 1.09001 * 109.49244 * 185.40784 * 15 14 13 39 39 H 1.09004 * 109.45792 * 181.38956 * 16 15 14 40 40 H 1.09003 * 109.46450 * 301.35739 * 16 15 14 41 41 H 0.96999 * 119.99718 * 179.97438 * 22 21 19 42 42 H 1.08999 * 109.58511 * 6.58326 * 27 13 11 43 43 H 1.08999 * 109.58969 * 246.15926 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3313 2.3266 0.0057 5 6 1.9202 3.5057 0.0001 6 7 3.2314 3.6379 -0.0055 7 6 4.0271 2.5745 -0.0054 8 8 5.3720 2.7211 -0.0117 9 6 5.8789 4.0571 -0.0179 10 6 3.4468 1.2935 0.0015 11 6 4.2830 0.0818 0.0026 12 8 4.6326 -0.4148 1.0563 13 7 4.6611 -0.4769 -1.1640 14 6 4.2473 0.1118 -2.4450 15 6 3.5708 -0.9722 -3.2902 16 6 4.5130 -2.1706 -3.4246 17 6 4.8044 -2.7505 -2.0386 18 1 3.8691 -3.0497 -1.5654 19 6 5.7062 -3.9502 -2.1747 20 1 6.0383 -4.2680 -3.1521 21 6 6.1073 -4.6421 -1.0517 22 7 5.7025 -4.2554 0.1384 23 14 7.2257 -6.1288 -1.2203 24 1 8.5000 -5.7191 -1.8634 25 1 7.5080 -6.6911 0.1249 26 1 6.5578 -7.1583 -2.0565 27 6 5.4951 -1.6865 -1.1792 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.3067 4.3946 -0.0002 32 1 6.9687 4.0322 -0.0221 33 1 5.5236 4.5765 -0.9077 34 1 5.5313 4.5818 0.8722 35 1 5.1221 0.4930 -2.9717 36 1 3.5446 0.9250 -2.2633 37 1 2.6472 -1.2881 -2.8053 38 1 3.3452 -0.5740 -4.2795 39 1 4.0440 -2.9334 -4.0461 40 1 5.4463 -1.8489 -3.8869 41 1 5.9844 -4.7424 0.9285 42 1 5.6158 -2.0598 -0.1623 43 1 6.4716 -1.4518 -1.6028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:59 Heat of formation + Delta-G solvation = -80.893004 kcal Electronic energy + Delta-G solvation = -28607.267451 eV Core-core repulsion = 24652.843552 eV Total energy + Delta-G solvation = -3954.423899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70819 -40.71383 -40.41891 -39.01188 -38.34533 -35.34371 -33.86207 -33.73040 -32.89434 -31.52157 -29.04350 -27.97900 -27.36013 -26.79523 -25.30499 -24.35164 -23.50058 -21.86652 -20.45347 -20.15668 -19.69361 -18.77928 -18.11163 -17.82628 -17.65146 -17.01413 -16.86718 -16.58940 -16.47082 -15.75522 -15.27581 -15.21795 -15.12645 -15.04528 -14.87507 -14.55424 -14.36269 -13.82436 -13.58090 -13.26651 -12.88769 -12.85691 -12.84768 -12.77564 -12.47907 -12.42577 -12.30654 -12.26247 -11.90017 -11.66394 -11.18886 -10.97568 -10.83684 -10.81742 -10.78165 -10.51857 -10.11429 -9.47909 -8.09259 -6.27240 -0.40030 -0.08239 1.33999 1.41595 1.43386 1.48184 1.52085 2.09488 2.13827 2.43345 2.50328 2.95151 2.99707 3.18485 3.40614 3.87564 3.90185 3.93954 4.10818 4.27394 4.32308 4.37699 4.38767 4.39837 4.51613 4.62753 4.67486 4.69072 4.74560 4.80155 4.84024 5.04512 5.21709 5.23852 5.32560 5.52322 5.54802 5.60287 5.84797 5.87499 5.94423 5.99185 6.32156 6.54903 6.79771 6.85369 7.18937 7.43125 8.94273 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004296 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.706740 B = 6515.411579 C = 7047.302146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.417 3.583 4 N -0.586 5.586 5 C 0.389 3.611 6 N -0.584 5.584 7 C 0.419 3.581 8 O -0.312 6.312 9 C 0.031 3.969 10 C -0.298 4.298 11 C 0.577 3.423 12 O -0.587 6.587 13 N -0.594 5.594 14 C 0.115 3.885 15 C -0.123 4.123 16 C -0.103 4.103 17 C 0.041 3.959 18 H -0.014 1.014 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.009 3.991 22 N -0.917 5.917 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.267 1.267 27 C 0.127 3.873 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.261 0.739 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 20.077 -5.256 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.232 3.768 4 N -0.321 5.321 5 C 0.103 3.897 6 N -0.320 5.320 7 C 0.234 3.766 8 O -0.215 6.215 9 C -0.062 4.062 10 C -0.307 4.307 11 C 0.363 3.637 12 O -0.467 6.467 13 N -0.324 5.324 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.140 4.140 17 C 0.022 3.978 18 H 0.004 0.996 19 C -0.574 4.574 20 H 0.083 0.917 21 C -0.190 4.190 22 N -0.555 5.555 23 Si 0.785 3.215 24 H -0.191 1.191 25 H -0.216 1.216 26 H -0.192 1.192 27 C 0.005 3.995 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.277 0.723 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.142 20.006 -4.547 22.460 hybrid contribution 0.993 -1.674 0.591 2.034 sum -8.148 18.332 -3.956 20.448 Atomic orbital electron populations 1.23339 0.73617 1.05187 1.03987 1.86328 1.26343 1.23946 1.85019 1.19727 0.86643 0.86102 0.84360 1.68343 1.39916 0.98307 1.25511 1.25646 0.86757 0.94876 0.82390 1.68341 1.07750 1.30333 1.25529 1.19653 0.85362 0.87235 0.84375 1.86281 1.15253 1.34798 1.85154 1.23367 1.00554 0.78372 1.03910 1.19478 0.92877 0.93913 1.24470 1.17857 0.79211 0.82977 0.83636 1.90755 1.58253 1.64811 1.32917 1.48394 1.50366 1.27787 1.05838 1.21786 0.99712 0.95872 0.83383 1.21886 0.98102 0.95584 1.00491 1.21504 0.98801 0.96662 0.97072 1.18889 0.94267 0.92423 0.92267 0.99582 1.21475 1.30523 1.12221 0.93190 0.91661 1.25933 0.97674 1.00430 0.94983 1.70109 1.45754 1.41176 0.98477 0.85586 0.79464 0.79484 0.76988 1.19093 1.21597 1.19164 1.21792 0.91384 0.82646 1.03647 0.90771 0.89931 0.86761 0.72314 0.86157 0.90088 0.90991 0.90084 0.90545 0.93232 0.87740 0.92420 0.92152 0.93161 0.90583 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.41 113.37 1.18 1.88 16 2 O -0.31 -10.64 10.02 -85.75 -0.86 -11.49 16 3 C 0.42 13.38 7.39 85.13 0.63 14.01 16 4 N -0.59 -13.83 9.36 -312.15 -2.92 -16.76 16 5 C 0.39 6.99 12.26 180.88 2.22 9.20 16 6 N -0.58 -13.26 9.36 -312.16 -2.92 -16.18 16 7 C 0.42 12.82 7.54 85.13 0.64 13.46 16 8 O -0.31 -9.48 10.02 -85.74 -0.86 -10.34 16 9 C 0.03 0.58 10.41 113.37 1.18 1.76 16 10 C -0.30 -10.95 3.68 -19.75 -0.07 -11.03 16 11 C 0.58 27.34 6.40 86.61 0.55 27.89 16 12 O -0.59 -34.11 16.52 -4.10 -0.07 -34.17 16 13 N -0.59 -26.77 2.97 -822.97 -2.45 -29.21 16 14 C 0.11 3.87 6.34 86.36 0.55 4.41 16 15 C -0.12 -3.98 6.08 30.67 0.19 -3.80 16 16 C -0.10 -4.11 5.10 30.62 0.16 -3.96 16 17 C 0.04 2.14 2.25 -11.45 -0.03 2.11 16 18 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 19 C -0.54 -30.11 8.56 25.60 0.22 -29.89 16 20 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 21 C 0.01 0.53 5.30 84.65 0.45 0.98 16 22 N -0.92 -57.51 11.40 21.45 0.24 -57.27 16 23 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.13 6.76 5.40 86.37 0.47 7.23 16 28 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.26 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 34 H 0.07 1.20 8.12 -2.38 -0.02 1.18 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.31 6.22 -2.39 -0.01 2.30 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.08 4.82 5.13 -2.39 -0.01 4.81 16 43 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -82.56 358.86 1.55 -81.01 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.02 Total: 13.08 kcal Atomic # 6 Polarization: 25.95 SS G_CDS: 8.33 Total: 34.28 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -8.05 Total: -119.42 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.79 Total: -56.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -82.56 1.55 -81.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.122 kcal (2) G-P(sol) polarization free energy of solvation -82.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds