Wall clock time and date at job start Tue Mar 31 2020 13:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35951 * 116.99911 * 2 1 4 4 C 1.38664 * 120.06515 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96650 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09605 * 0.27660 * 5 4 3 7 7 C 1.50698 * 119.93291 * 179.69867 * 6 5 4 8 8 C 1.50695 * 109.47077 * 90.00118 * 7 6 5 9 9 O 1.21283 * 120.00139 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00370 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62533 * 359.97438 * 10 8 7 12 12 C 1.53198 * 108.77188 * 126.37427 * 11 10 8 13 13 C 1.53042 * 109.31507 * 54.63239 * 12 11 10 14 14 C 1.53041 * 109.53379 * 298.63752 * 13 12 11 15 15 H 1.09001 * 109.49702 * 301.37570 * 14 13 12 16 16 C 1.50710 * 109.49284 * 181.32007 * 14 13 12 17 17 H 1.08002 * 119.99646 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99694 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99392 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 120.00473 * 359.97438 * 18 16 14 21 21 H 1.48502 * 109.46879 * 89.99993 * 20 18 16 22 22 H 1.48496 * 109.47204 * 210.00435 * 20 18 16 23 23 H 1.48503 * 109.46819 * 330.00282 * 20 18 16 24 24 C 1.46921 * 120.63259 * 179.72509 * 10 8 7 25 25 C 1.38255 * 120.12649 * 359.45031 * 6 5 4 26 26 C 1.38338 * 120.02693 * 0.54687 * 25 6 5 27 27 F 1.35100 * 120.04525 * 179.75544 * 26 25 6 28 28 H 1.09001 * 109.46978 * 300.00049 * 1 2 3 29 29 H 1.09010 * 109.46875 * 59.99364 * 1 2 3 30 30 H 1.09000 * 109.47716 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.01378 * 0.03843 * 4 3 2 32 32 H 1.08002 * 119.94689 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46776 * 210.00070 * 7 6 5 34 34 H 1.09002 * 109.47544 * 329.99874 * 7 6 5 35 35 H 1.08999 * 109.58819 * 246.15536 * 11 10 8 36 36 H 1.08996 * 109.58878 * 6.44058 * 11 10 8 37 37 H 1.08993 * 109.49526 * 174.58853 * 12 11 10 38 38 H 1.09006 * 109.49054 * 294.67800 * 12 11 10 39 39 H 1.09001 * 109.45600 * 58.65616 * 13 12 11 40 40 H 1.08999 * 109.45971 * 178.62946 * 13 12 11 41 41 H 0.97004 * 119.99900 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.59041 * 353.41047 * 24 10 8 43 43 H 1.08999 * 109.58996 * 113.84368 * 24 10 8 44 44 H 1.07997 * 119.98606 * 180.28035 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3025 3.6776 -0.0068 7 6 3.9851 5.0211 -0.0143 8 6 4.2194 5.4733 1.4040 9 8 3.8665 4.7738 2.3297 10 7 4.8213 6.6552 1.6438 11 6 5.2550 7.5134 0.5329 12 6 4.6556 8.9100 0.7257 13 6 5.0347 9.4365 2.1118 14 6 4.4586 8.5110 3.1859 15 1 3.3751 8.4602 3.0793 16 6 4.8050 9.0480 4.5509 17 1 5.3790 9.9582 4.6433 18 6 4.3899 8.3768 5.6814 19 7 4.6925 8.8452 6.8725 20 14 3.3977 6.8022 5.5214 21 1 4.3197 5.6391 5.4712 22 1 2.4926 6.6664 6.6908 23 1 2.5920 6.8494 4.2748 24 6 5.0512 7.1123 3.0211 25 6 4.0580 2.5198 -0.0017 26 6 3.4333 1.2855 -0.0011 27 9 4.1713 0.1539 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2137 2.3201 0.0016 32 1 1.3342 4.5115 0.0000 33 1 4.9406 4.9403 -0.5325 34 1 3.3538 5.7466 -0.5273 35 1 6.3429 7.5804 0.5261 36 1 4.9090 7.0920 -0.4110 37 1 5.0463 9.5821 -0.0382 38 1 3.5702 8.8547 0.6418 39 1 6.1204 9.4680 2.2038 40 1 4.6300 10.4401 2.2422 41 1 4.4002 8.3731 7.6679 42 1 4.5686 6.4279 3.7187 43 1 6.1222 7.1461 3.2209 44 1 5.1364 2.5790 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:28 Heat of formation + Delta-G solvation = -91.882161 kcal Electronic energy + Delta-G solvation = -27255.377913 eV Core-core repulsion = 23280.557527 eV Total energy + Delta-G solvation = -3974.820386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.84725 -40.41012 -39.70611 -37.92564 -36.80512 -33.55521 -32.33045 -31.88374 -30.89457 -30.55243 -28.45877 -26.89579 -25.22415 -24.44133 -22.96131 -22.06412 -21.84875 -19.77575 -18.64207 -18.38954 -17.15105 -17.06649 -16.92276 -16.64899 -16.30463 -15.48995 -15.18465 -15.05388 -14.94877 -14.53802 -14.42014 -13.99528 -13.95014 -13.64813 -13.31335 -13.00038 -12.85641 -12.57289 -12.48318 -12.40354 -12.18512 -11.83657 -11.76084 -11.38490 -11.30411 -11.21411 -11.07869 -10.64060 -10.42463 -10.12681 -9.79973 -9.58984 -9.22965 -9.12433 -9.04532 -8.61608 -8.26034 -8.09130 -6.12084 -4.13806 0.99940 1.05092 2.89759 2.93346 3.22131 3.37148 3.44769 3.55772 3.59511 4.06337 4.40749 4.43923 4.49988 4.70579 4.80955 4.84451 4.95028 5.03002 5.10264 5.14526 5.20635 5.21739 5.27911 5.30695 5.42532 5.46965 5.68514 5.78359 5.88956 5.94770 5.97665 6.06659 6.15669 6.31749 6.36251 6.44519 6.51370 6.61846 6.72466 6.83858 7.05460 7.12973 7.41021 7.70054 7.83809 8.43984 8.55659 8.91026 9.49541 10.99897 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003493 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.828931 B = 8013.266883 C = 8895.593287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.091 3.909 4 C -0.179 4.179 5 C -0.073 4.073 6 C -0.068 4.068 7 C -0.099 4.099 8 C 0.505 3.495 9 O -0.537 6.537 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.137 4.137 13 C -0.101 4.101 14 C 0.005 3.995 15 H 0.029 0.971 16 C -0.517 4.517 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.880 3.120 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.102 3.898 25 C -0.100 4.100 26 C 0.070 3.930 27 F -0.134 7.134 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -10.951 -20.346 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.069 4.069 7 C -0.139 4.139 8 C 0.292 3.708 9 O -0.414 6.414 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.175 4.175 13 C -0.139 4.139 14 C -0.015 4.015 15 H 0.047 0.953 16 C -0.555 4.555 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.710 3.290 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.018 4.018 25 C -0.119 4.119 26 C 0.050 3.950 27 F -0.113 7.113 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.499 -11.588 -19.639 23.456 hybrid contribution -0.608 -0.869 0.167 1.074 sum -6.107 -12.457 -19.471 23.908 Atomic orbital electron populations 1.23108 0.78020 1.04148 1.01571 1.86119 1.21663 1.25903 1.88862 1.18968 0.90791 0.85569 1.00157 1.21065 1.00191 0.91350 1.07196 1.20865 0.93804 0.97422 0.97052 1.19072 0.93269 0.93529 1.01014 1.20691 1.02524 0.94636 0.96027 1.20441 0.78161 0.81383 0.90781 1.90726 1.50828 1.54061 1.45833 1.48447 1.58598 1.18406 1.08715 1.21726 0.99479 0.91393 0.88921 1.21990 1.00917 0.95346 0.99255 1.21442 1.00552 0.99426 0.92444 1.19415 0.96219 0.90236 0.95634 0.95262 1.20956 1.35866 1.10974 0.87703 0.90455 1.25044 0.95231 0.97367 0.95325 1.69891 1.45923 1.39864 0.97645 0.86976 0.80975 0.83731 0.77294 1.19957 1.22344 1.18896 1.22510 1.01036 0.98484 0.79773 1.20819 1.00897 0.89729 1.00483 1.16851 0.85898 0.82860 1.09407 1.91488 1.76434 1.49003 1.94366 0.92342 0.92475 0.88044 0.84478 0.85046 0.87889 0.87753 0.91429 0.90608 0.91582 0.92018 0.92482 0.92210 0.92495 0.90345 0.91590 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.80 10.36 -19.59 -0.20 -4.00 16 3 C 0.09 1.18 6.69 -39.18 -0.26 0.92 16 4 C -0.18 -2.02 9.04 -39.44 -0.36 -2.38 16 5 C -0.07 -0.87 9.69 -39.59 -0.38 -1.25 16 6 C -0.07 -0.86 4.37 -104.61 -0.46 -1.32 16 7 C -0.10 -1.14 4.17 -29.04 -0.12 -1.26 16 8 C 0.51 8.78 7.69 -10.99 -0.08 8.69 16 9 O -0.54 -11.94 15.45 5.56 0.09 -11.85 16 10 N -0.61 -10.65 2.98 -173.01 -0.52 -11.16 16 11 C 0.11 1.36 6.35 -3.71 -0.02 1.34 16 12 C -0.14 -1.85 6.08 -26.61 -0.16 -2.01 16 13 C -0.10 -1.82 5.11 -26.69 -0.14 -1.96 16 14 C 0.00 0.10 1.83 -91.85 -0.17 -0.07 16 15 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 16 C -0.52 -14.22 9.15 -34.44 -0.31 -14.54 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 19 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 20 Si 0.88 23.38 24.32 -169.99 -4.13 19.25 16 21 H -0.27 -7.39 6.92 56.52 0.39 -7.00 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 23 H -0.26 -6.97 6.53 56.52 0.37 -6.60 16 24 C 0.10 2.26 5.09 -3.92 -0.02 2.24 16 25 C -0.10 -1.31 9.67 -39.54 -0.38 -1.69 16 26 C 0.07 0.97 7.31 -39.30 -0.29 0.69 16 27 F -0.13 -1.98 17.11 2.25 0.04 -1.94 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.06 0.33 7.66 -51.92 -0.40 -0.07 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 34 H 0.10 0.94 7.64 -51.93 -0.40 0.54 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.08 1.97 2.32 -51.93 -0.12 1.85 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -35.34 354.24 -7.02 -42.35 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.14 Total: -1.93 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.27 Total: -9.37 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.26 Total: -37.84 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.12 Total: -15.85 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.13 Total: 19.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.34 -7.02 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.529 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds