Wall clock time and date at job start Tue Mar 31 2020 13:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35951 * 116.99911 * 2 1 4 4 C 1.38664 * 120.06515 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96650 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09605 * 0.27660 * 5 4 3 7 7 C 1.50698 * 119.93291 * 179.69867 * 6 5 4 8 8 C 1.50695 * 109.47077 * 90.00118 * 7 6 5 9 9 O 1.21283 * 120.00139 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00370 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62533 * 359.97438 * 10 8 7 12 12 C 1.53198 * 108.77188 * 126.37427 * 11 10 8 13 13 C 1.53042 * 109.31507 * 54.63239 * 12 11 10 14 14 C 1.53041 * 109.53379 * 298.63752 * 13 12 11 15 15 H 1.09001 * 109.49702 * 301.37570 * 14 13 12 16 16 C 1.50710 * 109.49284 * 181.32007 * 14 13 12 17 17 H 1.08002 * 119.99646 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99694 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99392 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 120.00473 * 359.97438 * 18 16 14 21 21 H 1.48502 * 109.46879 * 89.99993 * 20 18 16 22 22 H 1.48496 * 109.47204 * 210.00435 * 20 18 16 23 23 H 1.48503 * 109.46819 * 330.00282 * 20 18 16 24 24 C 1.46921 * 120.63259 * 179.72509 * 10 8 7 25 25 C 1.38255 * 120.12649 * 359.45031 * 6 5 4 26 26 C 1.38338 * 120.02693 * 0.54687 * 25 6 5 27 27 F 1.35100 * 120.04525 * 179.75544 * 26 25 6 28 28 H 1.09001 * 109.46978 * 300.00049 * 1 2 3 29 29 H 1.09010 * 109.46875 * 59.99364 * 1 2 3 30 30 H 1.09000 * 109.47716 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.01378 * 0.03843 * 4 3 2 32 32 H 1.08002 * 119.94689 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46776 * 210.00070 * 7 6 5 34 34 H 1.09002 * 109.47544 * 329.99874 * 7 6 5 35 35 H 1.08999 * 109.58819 * 246.15536 * 11 10 8 36 36 H 1.08996 * 109.58878 * 6.44058 * 11 10 8 37 37 H 1.08993 * 109.49526 * 174.58853 * 12 11 10 38 38 H 1.09006 * 109.49054 * 294.67800 * 12 11 10 39 39 H 1.09001 * 109.45600 * 58.65616 * 13 12 11 40 40 H 1.08999 * 109.45971 * 178.62946 * 13 12 11 41 41 H 0.97004 * 119.99900 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.59041 * 353.41047 * 24 10 8 43 43 H 1.08999 * 109.58996 * 113.84368 * 24 10 8 44 44 H 1.07997 * 119.98606 * 180.28035 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3025 3.6776 -0.0068 7 6 3.9851 5.0211 -0.0143 8 6 4.2194 5.4733 1.4040 9 8 3.8665 4.7738 2.3297 10 7 4.8213 6.6552 1.6438 11 6 5.2550 7.5134 0.5329 12 6 4.6556 8.9100 0.7257 13 6 5.0347 9.4365 2.1118 14 6 4.4586 8.5110 3.1859 15 1 3.3751 8.4602 3.0793 16 6 4.8050 9.0480 4.5509 17 1 5.3790 9.9582 4.6433 18 6 4.3899 8.3768 5.6814 19 7 4.6925 8.8452 6.8725 20 14 3.3977 6.8022 5.5214 21 1 4.3197 5.6391 5.4712 22 1 2.4926 6.6664 6.6908 23 1 2.5920 6.8494 4.2748 24 6 5.0512 7.1123 3.0211 25 6 4.0580 2.5198 -0.0017 26 6 3.4333 1.2855 -0.0011 27 9 4.1713 0.1539 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2137 2.3201 0.0016 32 1 1.3342 4.5115 0.0000 33 1 4.9406 4.9403 -0.5325 34 1 3.3538 5.7466 -0.5273 35 1 6.3429 7.5804 0.5261 36 1 4.9090 7.0920 -0.4110 37 1 5.0463 9.5821 -0.0382 38 1 3.5702 8.8547 0.6418 39 1 6.1204 9.4680 2.2038 40 1 4.6300 10.4401 2.2422 41 1 4.4002 8.3731 7.6679 42 1 4.5686 6.4279 3.7187 43 1 6.1222 7.1461 3.2209 44 1 5.1364 2.5790 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:27 Heat of formation + Delta-G solvation = -115.580220 kcal Electronic energy + Delta-G solvation = -27256.405538 eV Core-core repulsion = 23280.557527 eV Total energy + Delta-G solvation = -3975.848011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.88553 -41.46444 -40.81478 -38.96398 -38.11242 -35.35214 -33.79413 -33.09567 -32.12397 -31.77123 -29.30320 -27.83643 -26.89525 -25.84721 -23.84745 -23.50515 -22.85478 -21.28456 -19.86933 -19.31759 -18.91511 -18.32985 -18.02468 -17.84804 -17.19355 -16.81252 -16.39124 -16.23937 -16.09337 -15.85241 -15.40110 -15.24449 -15.10130 -15.05390 -14.79246 -14.56031 -14.16827 -13.88096 -13.64668 -13.31468 -13.21818 -13.10569 -12.90552 -12.75172 -12.53246 -12.32891 -12.12706 -12.09557 -12.03718 -11.74607 -11.57236 -11.24246 -11.03618 -10.81792 -10.70337 -9.97089 -9.52867 -9.18095 -8.40754 -6.42140 0.08897 0.13782 1.20731 1.28227 1.38104 1.67863 2.05458 2.16264 2.19458 2.55818 2.97138 3.15931 3.54806 3.68033 3.72976 3.96883 4.08857 4.18620 4.19818 4.21789 4.32957 4.34133 4.42184 4.45354 4.48573 4.57464 4.61325 4.66491 4.69943 4.81188 4.84103 4.94759 5.00631 5.02519 5.09569 5.20479 5.27455 5.42653 5.43636 5.56106 5.60262 5.65684 5.72744 6.23765 6.26063 6.56954 6.67715 7.23532 7.25179 8.75459 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003493 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.828931 B = 8013.266883 C = 8895.593287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.179 4.179 5 C -0.077 4.077 6 C -0.082 4.082 7 C -0.085 4.085 8 C 0.498 3.502 9 O -0.596 6.596 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.100 4.100 14 C 0.004 3.996 15 H 0.015 0.985 16 C -0.511 4.511 17 H 0.050 0.950 18 C 0.027 3.973 19 N -0.939 5.939 20 Si 0.940 3.060 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.263 1.263 24 C 0.108 3.892 25 C -0.107 4.107 26 C 0.036 3.964 27 F -0.148 7.148 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.266 0.734 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -10.805 -24.178 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.036 3.964 4 C -0.197 4.197 5 C -0.095 4.095 6 C -0.083 4.083 7 C -0.124 4.124 8 C 0.288 3.712 9 O -0.477 6.477 10 N -0.343 5.343 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.138 4.138 14 C -0.015 4.015 15 H 0.033 0.967 16 C -0.550 4.550 17 H 0.068 0.932 18 C -0.171 4.171 19 N -0.579 5.579 20 Si 0.770 3.230 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.188 1.188 24 C -0.014 4.014 25 C -0.125 4.125 26 C 0.016 3.984 27 F -0.127 7.127 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.450 -11.421 -23.529 26.938 hybrid contribution -0.318 -0.884 1.348 1.643 sum -6.768 -12.306 -22.181 26.254 Atomic orbital electron populations 1.23436 0.75713 1.05914 1.02693 1.86093 1.24143 1.25920 1.88767 1.19190 0.90750 0.86502 0.99951 1.21386 1.01540 0.90619 1.06195 1.21242 0.93933 0.98377 0.95960 1.19291 0.93780 0.93859 1.01346 1.20757 1.05113 0.94519 0.91997 1.21509 0.76557 0.80404 0.92745 1.90705 1.53063 1.55658 1.48234 1.48489 1.58658 1.19398 1.07781 1.22167 1.00603 0.90199 0.89047 1.21955 1.01330 0.96545 0.96767 1.21397 1.00181 0.98145 0.94078 1.19349 0.95570 0.91982 0.94612 0.96655 1.21377 1.33756 1.09573 0.90245 0.93210 1.25632 0.96518 0.99652 0.95320 1.69992 1.48123 1.41456 0.98369 0.86033 0.79492 0.80572 0.76893 1.21492 1.22348 1.18789 1.21937 0.99912 0.96945 0.82647 1.21025 1.01604 0.89708 1.00197 1.17245 0.86729 0.82979 1.11399 1.91439 1.76817 1.49733 1.94691 0.91838 0.90597 0.86150 0.81776 0.82993 0.84293 0.83965 0.89951 0.85481 0.87434 0.91872 0.92521 0.92810 0.92433 0.93694 0.92348 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.90 10.36 -93.00 -0.96 -8.86 16 3 C 0.08 2.06 6.69 22.53 0.15 2.21 16 4 C -0.18 -3.62 9.04 22.36 0.20 -3.42 16 5 C -0.08 -1.59 9.69 22.26 0.22 -1.38 16 6 C -0.08 -1.83 4.37 -19.85 -0.09 -1.92 16 7 C -0.08 -1.55 4.17 29.10 0.12 -1.43 16 8 C 0.50 15.91 7.69 87.66 0.67 16.59 16 9 O -0.60 -26.03 15.45 -3.04 -0.05 -26.08 16 10 N -0.61 -19.60 2.98 -819.67 -2.44 -22.04 16 11 C 0.10 2.00 6.35 86.36 0.55 2.55 16 12 C -0.13 -2.83 6.08 30.67 0.19 -2.64 16 13 C -0.10 -3.41 5.11 30.62 0.16 -3.26 16 14 C 0.00 0.20 1.83 -11.59 -0.02 0.18 16 15 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 16 C -0.51 -28.83 9.15 25.60 0.23 -28.59 16 17 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 18 C 0.03 1.63 5.45 84.65 0.46 2.09 16 19 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 20 Si 0.94 50.49 24.32 68.60 1.67 52.15 16 21 H -0.29 -15.94 6.92 99.48 0.69 -15.25 16 22 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.26 -13.85 6.53 99.48 0.65 -13.20 16 24 C 0.11 4.72 5.09 86.23 0.44 5.16 16 25 C -0.11 -2.63 9.67 22.30 0.22 -2.41 16 26 C 0.04 1.00 7.31 22.45 0.16 1.17 16 27 F -0.15 -4.47 17.11 44.97 0.77 -3.70 16 28 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.08 0.68 7.66 -2.38 -0.02 0.66 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.16 2.26 6.30 -2.91 -0.02 2.24 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.14 1.58 7.88 -2.39 -0.02 1.56 16 34 H 0.14 1.57 7.64 -2.39 -0.02 1.55 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.13 1.30 5.93 -2.39 -0.01 1.29 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 42 H 0.04 2.28 2.32 -2.39 -0.01 2.28 16 43 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -83.31 354.24 5.00 -78.31 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 0.94 Total: 3.21 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.77 Total: -13.79 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.14 Total: -81.24 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.01 Total: -34.94 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.77 Total: -3.70 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 1.67 Total: 52.15 kcal Total: -83.31 5.00 -78.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.267 kcal (2) G-P(sol) polarization free energy of solvation -83.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds