Wall clock time and date at job start Tue Mar 31 2020 13:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35952 * 117.00152 * 2 1 4 4 C 1.38667 * 120.06382 * 0.02562 * 3 2 1 5 5 C 1.38172 * 119.96969 * 179.70610 * 4 3 2 6 6 C 1.38265 * 120.09461 * 0.54419 * 5 4 3 7 7 C 1.50699 * 119.93578 * 179.73138 * 6 5 4 8 8 H 1.09000 * 109.87609 * 160.75178 * 7 6 5 9 9 C 1.54383 * 110.02815 * 281.80689 * 7 6 5 10 10 C 1.55158 * 102.91824 * 141.65044 * 9 7 6 11 11 C 1.54909 * 101.61642 * 324.54893 * 10 9 7 12 12 N 1.47016 * 109.88830 * 39.72692 * 7 6 5 13 13 C 1.34782 * 125.64850 * 61.44862 * 12 7 6 14 14 O 1.21276 * 119.99741 * 0.02562 * 13 12 7 15 15 C 1.50693 * 119.99974 * 180.02562 * 13 12 7 16 16 C 1.52998 * 109.46932 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47099 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99908 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47123 * 89.99484 * 21 19 17 23 23 H 1.48498 * 109.46987 * 209.99759 * 21 19 17 24 24 H 1.48497 * 109.46784 * 329.99239 * 21 19 17 25 25 C 1.38251 * 120.12483 * 359.45449 * 6 5 4 26 26 C 1.38331 * 120.03461 * 0.27393 * 25 6 5 27 27 F 1.35098 * 120.05510 * 179.97438 * 26 25 6 28 28 H 1.09004 * 109.46879 * 59.99449 * 1 2 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46802 * 299.99555 * 1 2 3 31 31 H 1.08002 * 120.01103 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.95826 * 180.29860 * 5 4 3 33 33 H 1.08999 * 110.70275 * 23.30828 * 9 7 6 34 34 H 1.08993 * 110.75646 * 260.02054 * 9 7 6 35 35 H 1.09002 * 111.00366 * 206.45412 * 10 9 7 36 36 H 1.09002 * 111.00429 * 82.64474 * 10 9 7 37 37 H 1.09000 * 110.36449 * 155.82966 * 11 10 9 38 38 H 1.09002 * 110.36898 * 278.14897 * 11 10 9 39 39 H 1.09002 * 109.47510 * 300.00417 * 15 13 12 40 40 H 1.09004 * 109.47181 * 60.00626 * 15 13 12 41 41 H 1.08999 * 109.47373 * 299.99896 * 16 15 13 42 42 H 1.08996 * 109.47538 * 60.00236 * 16 15 13 43 43 H 0.97003 * 120.00144 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.98324 * 180.29012 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6776 0.0009 7 6 3.9851 5.0211 0.0015 8 1 5.0172 4.9122 0.3347 9 6 3.9539 5.6307 -1.4165 10 6 3.7095 7.1379 -1.1409 11 6 2.7723 7.0816 0.0913 12 7 3.2676 5.9463 0.8906 13 6 3.0909 5.7830 2.2168 14 8 3.5440 4.8052 2.7730 15 6 2.3305 6.8155 3.0084 16 6 2.2757 6.3929 4.4778 17 6 1.5147 7.4251 5.2694 18 1 1.1109 8.2957 4.7740 19 6 1.3348 7.2585 6.6262 20 7 1.8269 6.1986 7.2295 21 14 0.3921 8.5383 7.6075 22 1 -1.0502 8.1855 7.6243 23 1 0.9092 8.5747 8.9990 24 1 0.5681 9.8722 6.9790 25 6 4.0580 2.5198 0.0004 26 6 3.4334 1.2855 -0.0001 27 9 4.1713 0.1538 -0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2138 2.3201 0.0005 32 1 1.3344 4.5115 0.0120 33 1 3.1361 5.2077 -1.9999 34 1 4.9076 5.4808 -1.9224 35 1 3.2144 7.6145 -1.9870 36 1 4.6424 7.6472 -0.8993 37 1 2.8416 8.0070 0.6631 38 1 1.7435 6.9047 -0.2223 39 1 2.8333 7.7791 2.9264 40 1 1.3169 6.9000 2.6163 41 1 1.7730 5.4292 4.5603 42 1 3.2892 6.3087 4.8698 43 1 1.7001 6.0812 8.1840 44 1 5.1364 2.5790 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598198248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:10 Heat of formation + Delta-G solvation = -96.953325 kcal Electronic energy + Delta-G solvation = -27186.662180 eV Core-core repulsion = 23211.621892 eV Total energy + Delta-G solvation = -3975.040288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.74922 -40.55265 -39.60190 -37.75536 -36.73884 -33.47835 -31.92453 -31.31908 -30.80826 -30.51325 -28.35029 -26.93886 -25.81922 -23.65056 -22.87688 -22.14283 -21.64456 -20.41185 -18.75302 -18.31756 -17.25252 -17.07325 -16.46018 -16.21410 -16.14496 -15.71695 -15.09594 -15.00536 -14.78051 -14.48114 -14.39463 -14.32660 -13.84551 -13.54587 -13.12144 -12.91109 -12.70658 -12.50951 -12.27084 -12.14651 -12.07819 -11.82865 -11.53095 -11.38750 -11.29848 -11.09245 -10.95989 -10.92776 -10.87489 -10.59655 -9.95683 -9.64690 -9.18584 -9.04356 -8.93330 -8.52334 -8.32153 -8.09803 -5.96077 -4.00773 1.11129 1.16757 3.01030 3.17272 3.24737 3.32599 3.38897 3.41334 3.55751 4.17283 4.36726 4.46027 4.49709 4.56757 4.65731 4.82722 4.89771 4.97266 5.08648 5.16378 5.23052 5.28341 5.28582 5.38765 5.43324 5.46547 5.58980 5.61050 5.68725 5.75314 5.84828 5.98886 6.02702 6.09869 6.20864 6.22883 6.37230 6.55720 6.60591 6.89493 7.16962 7.74114 7.85000 7.86091 8.07182 8.38148 8.76168 9.07797 9.62791 11.14808 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003522 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.858834 B = 7947.474430 C = 9361.921148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.092 3.908 4 C -0.179 4.179 5 C -0.069 4.069 6 C -0.087 4.087 7 C 0.178 3.822 8 H 0.082 0.918 9 C -0.122 4.122 10 C -0.133 4.133 11 C 0.100 3.900 12 N -0.626 5.626 13 C 0.525 3.475 14 O -0.521 6.521 15 C -0.123 4.123 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.101 4.101 26 C 0.069 3.931 27 F -0.135 7.135 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -4.032 -22.994 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.046 3.954 4 C -0.198 4.198 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.074 3.926 8 H 0.100 0.900 9 C -0.160 4.160 10 C -0.171 4.171 11 C -0.023 4.023 12 N -0.364 5.364 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.163 4.163 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.121 4.121 26 C 0.049 3.951 27 F -0.114 7.114 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.422 -4.900 -22.376 22.910 hybrid contribution -0.721 0.570 0.704 1.158 sum -0.299 -4.330 -21.672 22.102 Atomic orbital electron populations 1.23106 0.78010 1.04115 1.01616 1.86111 1.21677 1.25923 1.88863 1.18964 0.90794 0.85549 1.00106 1.21086 1.00194 0.91422 1.07072 1.20756 0.93962 0.97143 0.96844 1.19792 0.93605 0.94493 1.01001 1.20319 0.95752 0.86152 0.90339 0.90007 1.22714 1.03178 0.95392 0.94747 1.22799 1.00363 0.96158 0.97759 1.22292 0.97476 0.90382 0.92166 1.48885 1.57175 1.23090 1.07218 1.21345 0.79669 0.88037 0.79391 1.90699 1.49003 1.31214 1.68598 1.21852 0.98617 0.96379 0.99468 1.18902 0.98059 0.96851 0.86209 1.21205 1.35128 1.07043 0.93155 0.92644 1.25020 0.95827 0.95557 0.97910 1.70002 1.45124 1.27485 1.10149 0.86604 0.80065 0.81878 0.79479 1.20690 1.21211 1.19874 1.20762 1.00813 0.89659 1.00820 1.16848 0.85891 0.82846 1.09516 1.91481 1.76442 1.49046 1.94393 0.92563 0.88070 0.92215 0.84582 0.85367 0.90303 0.89899 0.89847 0.90424 0.90024 0.91618 0.90351 0.90451 0.95894 0.95840 0.92947 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.20 10.36 -19.59 -0.20 -4.40 16 3 C 0.09 1.31 6.69 -39.17 -0.26 1.05 16 4 C -0.18 -2.28 9.04 -39.45 -0.36 -2.64 16 5 C -0.07 -0.90 9.12 -39.60 -0.36 -1.27 16 6 C -0.09 -1.18 4.09 -104.61 -0.43 -1.61 16 7 C 0.18 2.18 3.04 -68.08 -0.21 1.97 16 8 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 9 C -0.12 -0.99 6.47 -24.86 -0.16 -1.15 16 10 C -0.13 -0.97 7.08 -24.58 -0.17 -1.15 16 11 C 0.10 1.00 6.69 -2.53 -0.02 0.98 16 12 N -0.63 -8.86 2.35 -164.29 -0.39 -9.24 16 13 C 0.52 10.17 7.51 -10.99 -0.08 10.09 16 14 O -0.52 -12.44 15.81 5.56 0.09 -12.35 16 15 C -0.12 -2.51 4.64 -27.89 -0.13 -2.64 16 16 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.10 -1.39 9.65 -39.54 -0.38 -1.77 16 26 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 27 F -0.13 -2.10 17.11 2.25 0.04 -2.07 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 32 H 0.13 1.56 7.72 -52.49 -0.41 1.16 16 33 H 0.08 0.60 7.79 -51.93 -0.40 0.19 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.46 7.85 -51.93 -0.41 1.05 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.14 1.66 8.04 -52.48 -0.42 1.23 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -35.92 369.37 -8.06 -43.97 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.49 Total: -2.38 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.39 Total: -8.90 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.35 Total: -36.04 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.12 Total: -16.75 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.92 -8.06 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598198248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.979 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds