Wall clock time and date at job start Tue Mar 31 2020 13:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35952 * 117.00152 * 2 1 4 4 C 1.38667 * 120.06382 * 0.02562 * 3 2 1 5 5 C 1.38172 * 119.96969 * 179.70610 * 4 3 2 6 6 C 1.38265 * 120.09461 * 0.54419 * 5 4 3 7 7 C 1.50699 * 119.93578 * 179.73138 * 6 5 4 8 8 H 1.09000 * 109.87609 * 160.75178 * 7 6 5 9 9 C 1.54383 * 110.02815 * 281.80689 * 7 6 5 10 10 C 1.55158 * 102.91824 * 141.65044 * 9 7 6 11 11 C 1.54909 * 101.61642 * 324.54893 * 10 9 7 12 12 N 1.47016 * 109.88830 * 39.72692 * 7 6 5 13 13 C 1.34782 * 125.64850 * 61.44862 * 12 7 6 14 14 O 1.21276 * 119.99741 * 0.02562 * 13 12 7 15 15 C 1.50693 * 119.99974 * 180.02562 * 13 12 7 16 16 C 1.52998 * 109.46932 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47099 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99908 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47123 * 89.99484 * 21 19 17 23 23 H 1.48498 * 109.46987 * 209.99759 * 21 19 17 24 24 H 1.48497 * 109.46784 * 329.99239 * 21 19 17 25 25 C 1.38251 * 120.12483 * 359.45449 * 6 5 4 26 26 C 1.38331 * 120.03461 * 0.27393 * 25 6 5 27 27 F 1.35098 * 120.05510 * 179.97438 * 26 25 6 28 28 H 1.09004 * 109.46879 * 59.99449 * 1 2 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46802 * 299.99555 * 1 2 3 31 31 H 1.08002 * 120.01103 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.95826 * 180.29860 * 5 4 3 33 33 H 1.08999 * 110.70275 * 23.30828 * 9 7 6 34 34 H 1.08993 * 110.75646 * 260.02054 * 9 7 6 35 35 H 1.09002 * 111.00366 * 206.45412 * 10 9 7 36 36 H 1.09002 * 111.00429 * 82.64474 * 10 9 7 37 37 H 1.09000 * 110.36449 * 155.82966 * 11 10 9 38 38 H 1.09002 * 110.36898 * 278.14897 * 11 10 9 39 39 H 1.09002 * 109.47510 * 300.00417 * 15 13 12 40 40 H 1.09004 * 109.47181 * 60.00626 * 15 13 12 41 41 H 1.08999 * 109.47373 * 299.99896 * 16 15 13 42 42 H 1.08996 * 109.47538 * 60.00236 * 16 15 13 43 43 H 0.97003 * 120.00144 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.98324 * 180.29012 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6776 0.0009 7 6 3.9851 5.0211 0.0015 8 1 5.0172 4.9122 0.3347 9 6 3.9539 5.6307 -1.4165 10 6 3.7095 7.1379 -1.1409 11 6 2.7723 7.0816 0.0913 12 7 3.2676 5.9463 0.8906 13 6 3.0909 5.7830 2.2168 14 8 3.5440 4.8052 2.7730 15 6 2.3305 6.8155 3.0084 16 6 2.2757 6.3929 4.4778 17 6 1.5147 7.4251 5.2694 18 1 1.1109 8.2957 4.7740 19 6 1.3348 7.2585 6.6262 20 7 1.8269 6.1986 7.2295 21 14 0.3921 8.5383 7.6075 22 1 -1.0502 8.1855 7.6243 23 1 0.9092 8.5747 8.9990 24 1 0.5681 9.8722 6.9790 25 6 4.0580 2.5198 0.0004 26 6 3.4334 1.2855 -0.0001 27 9 4.1713 0.1538 -0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2138 2.3201 0.0005 32 1 1.3344 4.5115 0.0120 33 1 3.1361 5.2077 -1.9999 34 1 4.9076 5.4808 -1.9224 35 1 3.2144 7.6145 -1.9870 36 1 4.6424 7.6472 -0.8993 37 1 2.8416 8.0070 0.6631 38 1 1.7435 6.9047 -0.2223 39 1 2.8333 7.7791 2.9264 40 1 1.3169 6.9000 2.6163 41 1 1.7730 5.4292 4.5603 42 1 3.2892 6.3087 4.8698 43 1 1.7001 6.0812 8.1840 44 1 5.1364 2.5790 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598198248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:09 Heat of formation + Delta-G solvation = -119.045811 kcal Electronic energy + Delta-G solvation = -27187.620182 eV Core-core repulsion = 23211.621892 eV Total energy + Delta-G solvation = -3975.998290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91263 -41.63067 -40.69767 -39.01421 -37.78283 -35.57187 -33.39938 -32.27845 -32.21698 -31.73215 -29.20962 -27.82418 -27.68759 -24.90906 -23.95631 -23.48043 -22.73863 -21.56978 -20.00251 -19.35739 -18.81353 -18.24437 -17.88552 -17.25136 -17.20578 -17.14763 -16.49511 -16.23139 -16.11804 -15.89399 -15.74457 -15.26407 -14.91072 -14.51322 -14.33888 -14.11963 -14.08122 -13.82549 -13.57902 -13.29460 -13.20099 -12.95907 -12.87960 -12.79699 -12.48512 -12.38127 -12.20298 -12.06433 -11.92543 -11.79731 -11.60332 -11.53044 -11.29836 -10.69027 -10.56959 -10.00592 -9.69528 -9.14787 -8.17800 -6.32311 0.05012 0.12643 1.42048 1.44947 1.55896 1.73594 2.01792 2.13515 2.42759 2.50470 3.13347 3.15335 3.51007 3.60650 3.68116 3.80335 4.02004 4.05979 4.17337 4.22436 4.31457 4.32420 4.36101 4.45584 4.49363 4.53242 4.60172 4.65302 4.78424 4.84988 4.96262 5.00740 5.02346 5.05910 5.09944 5.18462 5.29861 5.44275 5.48504 5.56250 5.58966 5.62550 5.84967 6.17204 6.21104 6.56477 6.86711 7.31520 7.38560 8.94914 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003522 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.858834 B = 7947.474430 C = 9361.921148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.179 4.179 5 C -0.075 4.075 6 C -0.096 4.096 7 C 0.171 3.829 8 H 0.069 0.931 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.086 3.914 12 N -0.615 5.615 13 C 0.524 3.476 14 O -0.582 6.582 15 C -0.111 4.111 16 C 0.045 3.955 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.253 1.253 25 C -0.110 4.110 26 C 0.040 3.960 27 F -0.146 7.146 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.162 0.838 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.101 0.899 41 H -0.021 1.021 42 H -0.021 1.021 43 H 0.262 0.738 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -1.295 -25.324 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.035 3.965 4 C -0.197 4.197 5 C -0.094 4.094 6 C -0.097 4.097 7 C 0.068 3.932 8 H 0.087 0.913 9 C -0.149 4.149 10 C -0.158 4.158 11 C -0.035 4.035 12 N -0.350 5.350 13 C 0.315 3.685 14 O -0.461 6.461 15 C -0.150 4.150 16 C 0.007 3.993 17 C -0.579 4.579 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.177 1.177 25 C -0.129 4.129 26 C 0.021 3.979 27 F -0.125 7.125 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.120 0.880 41 H -0.003 1.003 42 H -0.003 1.003 43 H 0.071 0.929 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.317 -2.121 -24.791 24.916 hybrid contribution -0.191 -0.329 1.381 1.432 sum -1.507 -2.450 -23.410 23.587 Atomic orbital electron populations 1.23432 0.75732 1.05981 1.02573 1.86086 1.24117 1.25792 1.88787 1.19151 0.90773 0.86431 1.00109 1.21375 1.01452 0.90759 1.06138 1.20999 0.94015 0.97834 0.96520 1.19991 0.94010 0.94879 1.00812 1.20584 0.94566 0.85673 0.92409 0.91267 1.22725 1.04803 0.95605 0.91730 1.22809 1.00098 0.95554 0.97314 1.22728 0.99243 0.88793 0.92764 1.48736 1.55827 1.24527 1.05868 1.21035 0.79385 0.86954 0.81176 1.90679 1.51646 1.33344 1.70445 1.21582 1.00676 0.97420 0.95333 1.18666 0.94730 0.94995 0.90914 1.21703 1.34819 1.07651 0.93749 0.90479 1.26143 0.96843 0.97901 0.99493 1.70192 1.47000 1.30156 1.10559 0.85326 0.78408 0.79291 0.77259 1.19648 1.21333 1.17695 1.20954 1.01555 0.89604 1.00774 1.17203 0.86658 0.82961 1.11125 1.91438 1.76759 1.49614 1.94657 0.90502 0.85917 0.92228 0.82059 0.84080 0.89183 0.87977 0.86620 0.90198 0.89520 0.89569 0.88129 0.88036 1.00266 1.00274 0.92923 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.03 10.36 -93.01 -0.96 -9.99 16 3 C 0.08 2.36 6.69 22.53 0.15 2.51 16 4 C -0.18 -4.44 9.04 22.36 0.20 -4.24 16 5 C -0.08 -1.92 9.12 22.26 0.20 -1.71 16 6 C -0.10 -2.55 4.09 -19.86 -0.08 -2.63 16 7 C 0.17 3.98 3.04 44.62 0.14 4.12 16 8 H 0.07 1.79 8.01 -2.39 -0.02 1.77 16 9 C -0.11 -1.42 6.47 31.80 0.21 -1.21 16 10 C -0.12 -1.23 7.08 31.99 0.23 -1.00 16 11 C 0.09 1.41 6.69 86.86 0.58 1.99 16 12 N -0.62 -16.53 2.35 -792.09 -1.86 -18.39 16 13 C 0.52 20.54 7.51 87.65 0.66 21.20 16 14 O -0.58 -29.29 15.81 -3.02 -0.05 -29.34 16 15 C -0.11 -4.45 4.64 29.85 0.14 -4.32 16 16 C 0.04 2.51 4.26 29.85 0.13 2.64 16 17 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 18 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 20 N -0.94 -60.18 13.29 21.45 0.28 -59.89 16 21 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.11 -3.12 9.65 22.29 0.22 -2.90 16 26 C 0.04 1.26 7.31 22.45 0.16 1.42 16 27 F -0.15 -4.80 17.11 44.97 0.77 -4.03 16 28 H 0.08 0.94 7.66 -2.38 -0.02 0.92 16 29 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 31 H 0.16 3.01 6.30 -2.91 -0.02 3.00 16 32 H 0.14 3.13 7.72 -2.91 -0.02 3.11 16 33 H 0.09 1.01 7.79 -2.39 -0.02 0.99 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.38 7.48 -2.39 -0.02 1.37 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 3.58 7.85 -2.39 -0.02 3.56 16 40 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 41 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 42 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.15 3.73 8.04 -2.91 -0.02 3.70 16 Total: -1.00 -83.95 369.37 5.94 -78.01 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.00 Total: 10.69 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.74 Total: -13.24 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.58 Total: -78.29 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.01 Total: -39.33 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.77 Total: -4.03 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -83.95 5.94 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598198248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.037 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds