Wall clock time and date at job start Tue Mar 31 2020 13:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47585 * 2 1 4 4 C 1.42899 * 114.00415 * 174.87477 * 3 2 1 5 5 H 1.08999 * 109.46812 * 340.02081 * 4 3 2 6 6 C 1.50704 * 109.47120 * 220.02697 * 4 3 2 7 7 O 1.21284 * 120.00094 * 345.83912 * 6 4 3 8 8 N 1.34774 * 119.99615 * 165.84435 * 6 4 3 9 9 C 1.46500 * 120.00651 * 6.19753 * 8 6 4 10 10 C 1.50704 * 109.46982 * 94.18725 * 9 8 6 11 11 H 1.08001 * 119.99607 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99856 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00000 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00251 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46927 * 90.00182 * 14 12 10 16 16 H 1.48497 * 109.47016 * 209.99976 * 14 12 10 17 17 H 1.48496 * 109.46915 * 330.00104 * 14 12 10 18 18 C 1.40033 * 119.99537 * 186.20087 * 8 6 4 19 19 C 1.38851 * 120.04513 * 7.33151 * 18 8 6 20 20 C 1.38116 * 119.95192 * 179.76731 * 19 18 8 21 21 C 1.38474 * 120.04473 * 0.51144 * 20 19 18 22 22 F 1.35101 * 119.95524 * 179.72302 * 21 20 19 23 23 C 1.38472 * 120.09004 * 359.74431 * 21 20 19 24 24 C 1.38109 * 120.04797 * 359.97438 * 23 21 20 25 25 C 1.52995 * 109.47043 * 100.02292 * 4 3 2 26 26 C 1.53002 * 117.49997 * 6.99807 * 25 4 3 27 27 C 1.52997 * 117.50222 * 298.33375 * 25 4 3 28 28 H 1.08998 * 109.47306 * 59.99620 * 1 2 3 29 29 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47080 * 299.99928 * 1 2 3 31 31 H 1.09004 * 109.47080 * 240.00072 * 2 1 3 32 32 H 1.09006 * 109.47016 * 120.00272 * 2 1 3 33 33 H 1.08989 * 109.47251 * 214.18939 * 9 8 6 34 34 H 1.09001 * 109.46774 * 334.19551 * 9 8 6 35 35 H 0.97003 * 120.00342 * 179.97438 * 13 12 10 36 36 H 1.07997 * 120.02672 * 0.02562 * 19 18 8 37 37 H 1.07999 * 119.97628 * 180.23042 * 20 19 18 38 38 H 1.08007 * 119.97809 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.02343 * 179.97438 * 24 23 21 40 40 H 1.09006 * 115.54517 * 152.66436 * 25 4 3 41 41 H 1.08997 * 117.49688 * 359.97438 * 26 25 4 42 42 H 1.08997 * 117.49761 * 145.02087 * 26 25 4 43 43 H 1.08993 * 117.50252 * 214.97936 * 27 25 4 44 44 H 1.09004 * 117.49723 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4260 1.4618 0.1166 5 1 3.8321 0.5391 0.5311 6 6 3.7638 2.6133 1.0282 7 8 2.9112 3.4240 1.3227 8 7 5.0136 2.7422 1.5161 9 6 6.0761 1.8451 1.0553 10 6 6.8216 2.4926 -0.0832 11 1 6.5330 3.4743 -0.4286 12 6 7.8720 1.8316 -0.6838 13 7 8.5229 2.3968 -1.6770 14 14 8.3707 0.1332 -0.0867 15 1 7.6149 -0.8985 -0.8415 16 1 9.8266 -0.0607 -0.3057 17 1 8.0670 0.0087 1.3615 18 6 5.2963 3.7338 2.4636 19 6 4.2654 4.4834 3.0142 20 6 4.5461 5.4577 3.9522 21 6 5.8554 5.6942 4.3357 22 9 6.1284 6.6514 5.2492 23 6 6.8855 4.9512 3.7838 24 6 6.6086 3.9722 2.8499 25 6 4.0328 1.7105 -1.2657 26 6 3.0675 1.9513 -2.4281 27 6 3.8333 0.6294 -2.3298 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 6.7660 1.6475 1.8756 34 1 5.6375 0.9069 0.7154 35 1 9.2621 1.9320 -2.0993 36 1 3.2445 4.3021 2.7124 37 1 3.7441 6.0384 4.3835 38 1 7.9061 5.1375 4.0839 39 1 7.4123 3.3933 2.4194 40 1 4.9763 2.2564 -1.2735 41 1 2.0001 1.9321 -2.2080 42 1 3.3761 2.6552 -3.2009 43 1 4.6451 0.4644 -3.0380 44 1 3.2700 -0.2592 -2.0449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599393624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:04 Heat of formation + Delta-G solvation = -52.187989 kcal Electronic energy + Delta-G solvation = -28107.178081 eV Core-core repulsion = 24134.078964 eV Total energy + Delta-G solvation = -3973.099118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.47268 -40.61208 -38.79049 -37.36321 -35.84657 -35.21242 -32.76483 -31.47444 -30.70773 -29.80605 -28.21819 -27.01753 -23.37600 -23.03538 -22.44269 -21.97509 -21.75354 -20.62667 -19.28673 -17.47482 -17.25665 -17.03506 -16.78363 -16.34778 -16.00025 -15.29102 -15.21190 -14.84155 -14.51980 -14.25917 -14.12216 -14.02310 -13.32038 -13.15634 -12.85062 -12.72342 -12.69644 -12.51632 -12.34076 -12.20621 -12.00707 -11.87896 -11.38740 -11.26630 -11.11199 -10.93159 -10.83221 -10.78902 -10.58502 -10.06836 -9.80076 -9.75213 -9.50508 -9.29027 -8.90765 -8.73857 -8.64428 -7.28765 -6.39585 -4.43236 1.51652 1.68768 2.91283 3.03340 3.06056 3.11497 3.17025 3.95135 4.09755 4.14356 4.30390 4.70818 4.77165 4.87483 4.92383 5.05637 5.16944 5.22872 5.25648 5.30499 5.33390 5.49668 5.55914 5.67689 5.72020 5.76707 5.85379 5.90155 5.92897 6.07742 6.08387 6.22242 6.31682 6.33196 6.40751 6.56351 6.63092 6.67203 6.72354 6.95333 6.99747 7.16940 7.24859 7.53052 7.75177 8.15759 8.51138 8.65749 9.16261 10.71493 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.005897 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.440542 B = 4746.843859 C = 7034.587481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.113 3.887 5 H 0.087 0.913 6 C 0.524 3.476 7 O -0.516 6.516 8 N -0.529 5.529 9 C 0.196 3.804 10 C -0.546 4.546 11 H 0.085 0.915 12 C 0.086 3.914 13 N -0.878 5.878 14 Si 0.863 3.137 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.164 3.836 19 C -0.146 4.146 20 C -0.137 4.137 21 C 0.054 3.946 22 F -0.152 7.152 23 C -0.133 4.133 24 C -0.114 4.114 25 C -0.179 4.179 26 C -0.165 4.165 27 C -0.177 4.177 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.270 0.730 36 H 0.181 0.819 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 -4.984 4.693 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.274 6.274 4 C 0.052 3.948 5 H 0.105 0.895 6 C 0.313 3.687 7 O -0.393 6.393 8 N -0.249 5.249 9 C 0.076 3.924 10 C -0.583 4.583 11 H 0.103 0.897 12 C -0.120 4.120 13 N -0.514 5.514 14 Si 0.689 3.311 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.188 1.188 18 C 0.068 3.932 19 C -0.165 4.165 20 C -0.156 4.156 21 C 0.034 3.966 22 F -0.131 7.131 23 C -0.153 4.153 24 C -0.134 4.134 25 C -0.197 4.197 26 C -0.202 4.202 27 C -0.214 4.214 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.197 0.803 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.950 -4.483 4.642 11.034 hybrid contribution 0.942 -1.005 0.276 1.405 sum -8.009 -5.489 4.917 10.883 Atomic orbital electron populations 1.21716 0.93673 1.01907 1.03275 1.22694 0.95709 0.84142 1.00161 1.88000 1.19574 1.25774 1.94044 1.21304 0.82232 0.96665 0.94554 0.89535 1.20454 0.81446 0.86675 0.80086 1.90341 1.48561 1.42385 1.58026 1.45637 1.10074 1.31464 1.37755 1.20170 0.86072 0.89372 0.96815 1.21143 1.15701 1.05833 1.15644 0.89716 1.24797 0.95388 0.97480 0.94288 1.69871 1.21045 1.38107 1.22345 0.87042 0.78897 0.85085 0.80081 1.19469 1.20597 1.18753 1.18018 0.93687 0.90892 0.90632 1.22371 1.02513 0.95348 0.96309 1.21024 0.94650 1.00285 0.99639 1.17711 0.94302 0.91322 0.93313 1.91428 1.94723 1.62089 1.64817 1.20867 0.98622 0.97030 0.98764 1.20973 0.95761 0.98859 0.97851 1.23305 1.03457 1.05117 0.87828 1.22845 0.98242 0.98944 1.00198 1.22946 1.03166 0.92564 1.02755 0.91775 0.91315 0.91809 0.92935 0.93500 0.93879 0.94188 0.92021 0.80292 0.85282 0.85000 0.83322 0.82164 0.88317 0.89160 0.88579 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.15 0.38 -1.13 16 2 C 0.05 0.61 6.36 37.15 0.24 0.85 16 3 O -0.36 -5.80 7.92 -54.73 -0.43 -6.23 16 4 C 0.11 1.96 2.11 -27.88 -0.06 1.90 16 5 H 0.09 1.36 6.35 -51.93 -0.33 1.03 16 6 C 0.52 10.35 6.89 -10.98 -0.08 10.27 16 7 O -0.52 -11.00 13.07 -13.94 -0.18 -11.18 16 8 N -0.53 -10.48 2.69 -114.72 -0.31 -10.78 16 9 C 0.20 3.95 3.14 -5.19 -0.02 3.93 16 10 C -0.55 -12.89 6.87 -34.44 -0.24 -13.12 16 11 H 0.08 2.31 7.95 -52.49 -0.42 1.89 16 12 C 0.09 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.88 -23.48 13.96 55.43 0.77 -22.70 16 14 Si 0.86 18.03 27.47 -169.99 -4.67 13.37 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.26 -5.18 6.54 56.52 0.37 -4.81 16 18 C 0.16 3.17 6.48 -83.65 -0.54 2.63 16 19 C -0.15 -2.68 8.97 -39.40 -0.35 -3.03 16 20 C -0.14 -2.25 10.02 -39.54 -0.40 -2.65 16 21 C 0.05 0.89 7.30 -39.41 -0.29 0.60 16 22 F -0.15 -2.46 17.27 2.25 0.04 -2.42 16 23 C -0.13 -2.20 10.02 -39.54 -0.40 -2.60 16 24 C -0.11 -2.08 9.05 -39.40 -0.36 -2.44 16 25 C -0.18 -3.21 5.00 -90.62 -0.45 -3.67 16 26 C -0.17 -2.65 9.87 -26.69 -0.26 -2.91 16 27 C -0.18 -2.72 10.05 -26.69 -0.27 -2.99 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 5.93 -51.93 -0.31 0.29 16 32 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 33 H 0.04 0.85 5.86 -51.93 -0.30 0.55 16 34 H 0.04 0.76 5.15 -51.93 -0.27 0.50 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.18 3.46 4.72 -55.20 -0.26 3.19 16 37 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.15 2.78 6.17 -52.49 -0.32 2.45 16 40 H 0.16 3.42 4.89 -51.93 -0.25 3.17 16 41 H 0.10 1.53 7.05 -51.93 -0.37 1.17 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.13 5.99 -51.93 -0.31 0.82 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -27.01 354.18 -8.31 -35.32 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.68 Total: 11.64 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.18 Total: -12.34 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.47 Total: -33.49 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.62 Total: -17.41 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -4.67 Total: 13.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.01 -8.31 -35.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599393624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.872 kcal (2) G-P(sol) polarization free energy of solvation -27.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds