Wall clock time and date at job start Tue Mar 31 2020 13:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47585 * 2 1 4 4 C 1.42899 * 114.00415 * 174.87477 * 3 2 1 5 5 H 1.08999 * 109.46812 * 340.02081 * 4 3 2 6 6 C 1.50704 * 109.47120 * 220.02697 * 4 3 2 7 7 O 1.21284 * 120.00094 * 345.83912 * 6 4 3 8 8 N 1.34774 * 119.99615 * 165.84435 * 6 4 3 9 9 C 1.46500 * 120.00651 * 6.19753 * 8 6 4 10 10 C 1.50704 * 109.46982 * 94.18725 * 9 8 6 11 11 H 1.08001 * 119.99607 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99856 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00000 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00251 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46927 * 90.00182 * 14 12 10 16 16 H 1.48497 * 109.47016 * 209.99976 * 14 12 10 17 17 H 1.48496 * 109.46915 * 330.00104 * 14 12 10 18 18 C 1.40033 * 119.99537 * 186.20087 * 8 6 4 19 19 C 1.38851 * 120.04513 * 7.33151 * 18 8 6 20 20 C 1.38116 * 119.95192 * 179.76731 * 19 18 8 21 21 C 1.38474 * 120.04473 * 0.51144 * 20 19 18 22 22 F 1.35101 * 119.95524 * 179.72302 * 21 20 19 23 23 C 1.38472 * 120.09004 * 359.74431 * 21 20 19 24 24 C 1.38109 * 120.04797 * 359.97438 * 23 21 20 25 25 C 1.52995 * 109.47043 * 100.02292 * 4 3 2 26 26 C 1.53002 * 117.49997 * 6.99807 * 25 4 3 27 27 C 1.52997 * 117.50222 * 298.33375 * 25 4 3 28 28 H 1.08998 * 109.47306 * 59.99620 * 1 2 3 29 29 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47080 * 299.99928 * 1 2 3 31 31 H 1.09004 * 109.47080 * 240.00072 * 2 1 3 32 32 H 1.09006 * 109.47016 * 120.00272 * 2 1 3 33 33 H 1.08989 * 109.47251 * 214.18939 * 9 8 6 34 34 H 1.09001 * 109.46774 * 334.19551 * 9 8 6 35 35 H 0.97003 * 120.00342 * 179.97438 * 13 12 10 36 36 H 1.07997 * 120.02672 * 0.02562 * 19 18 8 37 37 H 1.07999 * 119.97628 * 180.23042 * 20 19 18 38 38 H 1.08007 * 119.97809 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.02343 * 179.97438 * 24 23 21 40 40 H 1.09006 * 115.54517 * 152.66436 * 25 4 3 41 41 H 1.08997 * 117.49688 * 359.97438 * 26 25 4 42 42 H 1.08997 * 117.49761 * 145.02087 * 26 25 4 43 43 H 1.08993 * 117.50252 * 214.97936 * 27 25 4 44 44 H 1.09004 * 117.49723 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4260 1.4618 0.1166 5 1 3.8321 0.5391 0.5311 6 6 3.7638 2.6133 1.0282 7 8 2.9112 3.4240 1.3227 8 7 5.0136 2.7422 1.5161 9 6 6.0761 1.8451 1.0553 10 6 6.8216 2.4926 -0.0832 11 1 6.5330 3.4743 -0.4286 12 6 7.8720 1.8316 -0.6838 13 7 8.5229 2.3968 -1.6770 14 14 8.3707 0.1332 -0.0867 15 1 7.6149 -0.8985 -0.8415 16 1 9.8266 -0.0607 -0.3057 17 1 8.0670 0.0087 1.3615 18 6 5.2963 3.7338 2.4636 19 6 4.2654 4.4834 3.0142 20 6 4.5461 5.4577 3.9522 21 6 5.8554 5.6942 4.3357 22 9 6.1284 6.6514 5.2492 23 6 6.8855 4.9512 3.7838 24 6 6.6086 3.9722 2.8499 25 6 4.0328 1.7105 -1.2657 26 6 3.0675 1.9513 -2.4281 27 6 3.8333 0.6294 -2.3298 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 6.7660 1.6475 1.8756 34 1 5.6375 0.9069 0.7154 35 1 9.2621 1.9320 -2.0993 36 1 3.2445 4.3021 2.7124 37 1 3.7441 6.0384 4.3835 38 1 7.9061 5.1375 4.0839 39 1 7.4123 3.3933 2.4194 40 1 4.9763 2.2564 -1.2735 41 1 2.0001 1.9321 -2.2080 42 1 3.3761 2.6552 -3.2009 43 1 4.6451 0.4644 -3.0380 44 1 3.2700 -0.2592 -2.0449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599393624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:03 Heat of formation + Delta-G solvation = -64.702832 kcal Electronic energy + Delta-G solvation = -28107.720766 eV Core-core repulsion = 24134.078964 eV Total energy + Delta-G solvation = -3973.641802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.79982 -42.08015 -40.08843 -38.76864 -37.25741 -36.61401 -34.60074 -32.51256 -32.09034 -31.20297 -29.86444 -28.37723 -25.02514 -24.09351 -23.84128 -23.41764 -22.96238 -22.01838 -20.71644 -19.17043 -18.72418 -18.54874 -18.16410 -17.67896 -17.19612 -16.64052 -16.58665 -16.41746 -15.83669 -15.68899 -15.45908 -15.42583 -14.76193 -14.53825 -14.50663 -14.06418 -13.97870 -13.83559 -13.61025 -13.45469 -13.32427 -13.09678 -12.92863 -12.54300 -12.44103 -12.25842 -12.18256 -12.11838 -12.05988 -11.72621 -11.31268 -11.08789 -10.89342 -10.75813 -10.67429 -10.16555 -10.03989 -8.77289 -8.28673 -6.36006 0.09655 0.30038 1.40702 1.41732 1.43971 1.50800 1.69847 2.34348 2.67637 2.72894 2.99807 3.06487 3.32035 3.38737 3.72267 3.85444 3.88229 3.95914 4.17171 4.20210 4.25877 4.28375 4.33824 4.36847 4.43429 4.44715 4.64083 4.71435 4.75601 4.80637 4.85127 5.00288 5.02367 5.09782 5.21703 5.22640 5.29092 5.30691 5.31512 5.34180 5.51954 5.58166 6.01619 6.10433 6.14466 6.41210 6.66795 7.00099 7.26691 8.86275 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.005897 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.440542 B = 4746.843859 C = 7034.587481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 O -0.373 6.373 4 C 0.124 3.876 5 H 0.105 0.895 6 C 0.514 3.486 7 O -0.539 6.539 8 N -0.533 5.533 9 C 0.204 3.796 10 C -0.528 4.528 11 H 0.033 0.967 12 C 0.036 3.964 13 N -0.932 5.932 14 Si 0.924 3.076 15 H -0.256 1.256 16 H -0.289 1.289 17 H -0.238 1.238 18 C 0.139 3.861 19 C -0.155 4.155 20 C -0.129 4.129 21 C 0.054 3.946 22 F -0.146 7.146 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.202 4.202 26 C -0.162 4.162 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.269 0.731 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -7.066 6.034 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 O -0.292 6.292 4 C 0.063 3.937 5 H 0.123 0.877 6 C 0.305 3.695 7 O -0.418 6.418 8 N -0.253 5.253 9 C 0.083 3.917 10 C -0.566 4.566 11 H 0.051 0.949 12 C -0.165 4.165 13 N -0.570 5.570 14 Si 0.746 3.254 15 H -0.180 1.180 16 H -0.214 1.214 17 H -0.161 1.161 18 C 0.043 3.957 19 C -0.175 4.175 20 C -0.148 4.148 21 C 0.034 3.966 22 F -0.125 7.125 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.221 4.221 26 C -0.199 4.199 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.188 0.812 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.790 -6.565 6.007 13.230 hybrid contribution 1.135 -0.204 -0.133 1.161 sum -8.654 -6.769 5.874 12.459 Atomic orbital electron populations 1.21740 0.92212 1.03574 1.02681 1.23027 0.96923 0.82449 1.01367 1.87994 1.18611 1.28512 1.94042 1.21140 0.83189 0.96083 0.93323 0.87725 1.21064 0.81129 0.87272 0.80042 1.90325 1.49117 1.43425 1.58921 1.45661 1.10070 1.31658 1.37919 1.20043 0.86226 0.89735 0.95690 1.21059 1.15630 1.03678 1.16251 0.94882 1.25561 0.95255 1.01498 0.94184 1.70029 1.22212 1.40279 1.24492 0.86066 0.78020 0.80188 0.81106 1.18009 1.21447 1.16077 1.18331 0.94532 0.91566 0.91230 1.22303 1.01890 0.96116 0.97154 1.21247 0.95529 0.99467 0.98587 1.17750 0.94344 0.91257 0.93216 1.91447 1.94679 1.61802 1.64540 1.21099 0.99958 0.95884 0.97633 1.20964 0.95096 0.99729 0.98701 1.23064 1.02572 1.07189 0.89256 1.22854 0.98344 0.99635 0.99062 1.23013 1.02625 0.92857 1.00602 0.92097 0.88486 0.92701 0.91575 0.92328 0.92725 0.92204 0.92178 0.81236 0.82761 0.82544 0.84096 0.86014 0.87526 0.89704 0.89007 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.04 0.83 6.36 71.98 0.46 1.29 16 3 O -0.37 -11.65 7.92 -130.34 -1.03 -12.69 16 4 C 0.12 4.17 2.11 29.85 0.06 4.23 16 5 H 0.11 3.06 6.35 -2.39 -0.02 3.04 16 6 C 0.51 20.52 6.89 87.66 0.60 21.13 16 7 O -0.54 -23.45 13.07 15.60 0.20 -23.25 16 8 N -0.53 -21.33 2.69 -635.24 -1.71 -23.04 16 9 C 0.20 8.12 3.14 85.63 0.27 8.39 16 10 C -0.53 -25.72 6.87 25.60 0.18 -25.54 16 11 H 0.03 1.92 7.95 -2.91 -0.02 1.90 16 12 C 0.04 1.77 5.47 84.65 0.46 2.23 16 13 N -0.93 -51.68 13.96 21.45 0.30 -51.39 16 14 Si 0.92 36.30 27.47 68.60 1.88 38.18 16 15 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 16 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.24 -8.31 6.54 99.48 0.65 -7.66 16 18 C 0.14 5.43 6.48 38.13 0.25 5.68 16 19 C -0.15 -5.70 8.97 22.39 0.20 -5.50 16 20 C -0.13 -4.09 10.02 22.30 0.22 -3.87 16 21 C 0.05 1.72 7.30 22.38 0.16 1.88 16 22 F -0.15 -4.40 17.27 44.97 0.78 -3.62 16 23 C -0.13 -4.01 10.02 22.29 0.22 -3.78 16 24 C -0.12 -4.53 9.05 22.39 0.20 -4.32 16 25 C -0.20 -7.25 5.00 -10.80 -0.05 -7.30 16 26 C -0.16 -5.12 9.87 30.62 0.30 -4.82 16 27 C -0.15 -4.47 10.05 30.62 0.31 -4.17 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.26 5.93 -2.38 -0.01 1.25 16 32 H 0.06 1.15 8.00 -2.38 -0.02 1.13 16 33 H 0.05 2.08 5.86 -2.39 -0.01 2.06 16 34 H 0.06 2.17 5.15 -2.39 -0.01 2.16 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.17 6.66 4.72 -45.82 -0.22 6.44 16 37 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.14 5.29 6.17 -2.91 -0.02 5.28 16 40 H 0.12 5.42 4.89 -2.38 -0.01 5.41 16 41 H 0.11 3.20 7.05 -2.39 -0.02 3.18 16 42 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.11 2.62 5.99 -2.38 -0.01 2.61 16 Total: -1.00 -60.76 354.18 5.79 -54.97 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.78 Total: 37.16 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.59 Total: -16.33 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.41 Total: -74.43 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.83 Total: -35.93 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.62 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.88 Total: 38.18 kcal Total: -60.76 5.79 -54.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599393624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.732 kcal (2) G-P(sol) polarization free energy of solvation -60.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds