Wall clock time and date at job start Tue Mar 31 2020 13:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21593 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47584 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.06152 * 359.97221 * 5 3 2 7 7 C 1.37744 * 120.02518 * 179.77104 * 6 5 3 8 8 C 1.38980 * 120.12931 * 0.50657 * 7 6 5 9 9 N 1.39639 * 119.94060 * 179.76319 * 8 7 6 10 10 C 1.34773 * 119.99923 * 335.15149 * 9 8 7 11 11 O 1.21583 * 120.00095 * 354.36500 * 10 9 8 12 12 N 1.34778 * 119.99575 * 174.09477 * 10 9 8 13 13 C 1.46503 * 119.99724 * 180.27117 * 12 10 9 14 14 C 1.52997 * 109.46885 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47004 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00284 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00383 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47543 * 119.99453 * 19 17 15 22 22 H 1.48503 * 109.47124 * 239.99712 * 19 17 15 23 23 C 1.39537 * 120.11815 * 359.49407 * 8 7 6 24 24 O 1.35991 * 120.01237 * 180.27183 * 23 8 7 25 25 C 1.42901 * 116.99953 * 179.97438 * 24 23 8 26 26 C 1.38108 * 119.97626 * 0.25142 * 23 8 7 27 27 H 1.08998 * 109.47601 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47451 * 300.00777 * 1 2 3 29 29 H 1.09007 * 109.46689 * 60.00111 * 1 2 3 30 30 H 0.96996 * 119.99339 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.98646 * 0.02562 * 6 5 3 32 32 H 1.07993 * 119.93684 * 180.25844 * 7 6 5 33 33 H 0.96996 * 119.99410 * 155.14350 * 9 8 7 34 34 H 0.96999 * 120.00433 * 0.27808 * 12 10 9 35 35 H 1.09001 * 109.47163 * 300.00242 * 13 12 10 36 36 H 1.08998 * 109.47135 * 60.00253 * 13 12 10 37 37 H 1.09001 * 109.47378 * 300.00062 * 14 13 12 38 38 H 1.08996 * 109.47535 * 60.00385 * 14 13 12 39 39 H 0.97008 * 120.00055 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46638 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.47405 * 300.00592 * 25 24 23 42 42 H 1.09005 * 109.46948 * 60.00852 * 25 24 23 43 43 H 1.08006 * 120.06506 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6148 1.1671 -0.0006 6 6 4.3146 -0.0423 -0.0005 7 6 5.6921 -0.0415 -0.0058 8 6 6.3890 1.1609 -0.0006 9 7 7.7854 1.1571 -0.0010 10 6 8.4565 0.0939 0.4845 11 8 7.8506 -0.8165 1.0158 12 7 9.7987 0.0375 0.3762 13 6 10.5277 -1.1209 0.8986 14 6 12.0259 -0.9351 0.6502 15 6 12.7757 -2.1270 1.1870 16 1 12.2375 -2.9359 1.6586 17 6 14.1488 -2.1843 1.0771 18 7 14.8043 -1.1991 0.5033 19 14 15.0782 -3.6621 1.7419 20 1 14.1165 -4.6257 2.3352 21 1 15.8194 -4.3195 0.6356 22 1 16.0376 -3.2157 2.7839 23 6 5.6959 2.3720 -0.0006 24 8 6.3800 3.5473 -0.0011 25 6 5.6060 4.7485 -0.0017 26 6 4.3148 2.3766 -0.0006 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.9499 -0.8401 0.0004 31 1 3.7753 -0.9780 -0.0005 32 1 6.2315 -0.9770 -0.0100 33 1 8.2723 1.9196 -0.3508 34 1 10.2821 0.7639 -0.0476 35 1 10.3458 -1.2119 1.9695 36 1 10.1846 -2.0240 0.3938 37 1 12.2081 -0.8438 -0.4206 38 1 12.3687 -0.0321 1.1553 39 1 15.7704 -1.2396 0.4256 40 1 6.2731 5.6105 -0.0024 41 1 4.9773 4.7752 -0.8916 42 1 4.9773 4.7760 0.8884 43 1 3.7769 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599828538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:17 Heat of formation + Delta-G solvation = -74.922426 kcal Electronic energy + Delta-G solvation = -25902.522192 eV Core-core repulsion = 21948.357197 eV Total energy + Delta-G solvation = -3954.164995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09252 -39.95592 -39.32139 -37.30654 -35.22602 -34.95118 -34.58862 -32.92277 -30.66393 -30.42683 -29.23984 -27.98105 -26.64231 -24.92875 -23.45159 -22.70037 -21.23001 -20.85107 -20.57036 -19.07451 -18.34269 -17.52921 -16.89006 -16.49138 -16.29042 -16.02692 -15.69812 -15.44107 -15.35438 -14.80860 -14.57069 -14.30596 -14.17004 -13.83885 -13.68816 -13.38452 -13.25703 -12.98275 -12.72984 -12.62813 -12.32763 -11.90767 -11.70743 -11.33655 -11.24204 -11.10384 -10.65459 -10.64553 -10.35631 -10.33413 -9.91539 -9.62780 -9.48901 -9.29739 -8.83026 -8.65365 -8.43421 -7.87650 -6.12839 -4.15769 0.61013 1.20248 2.57112 2.71329 2.86663 3.02196 3.26339 3.30183 3.34240 3.39131 3.74253 4.29027 4.41485 4.48678 4.61029 4.76906 4.81263 4.90679 4.93766 5.02451 5.14785 5.23910 5.24558 5.28277 5.41950 5.66773 5.75010 5.89373 6.02740 6.09654 6.19196 6.29990 6.30900 6.61550 6.68072 6.81983 7.01867 7.12321 7.14602 7.49936 7.56947 7.85636 7.91286 8.10867 8.25709 8.69294 8.90497 9.49345 10.98762 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.002165 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.226911 B =12932.534453 C =14091.640878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.564 3.436 4 O -0.543 6.543 5 C -0.137 4.137 6 C -0.092 4.092 7 C -0.111 4.111 8 C 0.189 3.811 9 N -0.679 5.679 10 C 0.697 3.303 11 O -0.578 6.578 12 N -0.729 5.729 13 C 0.138 3.862 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.078 3.922 24 O -0.317 6.317 25 C 0.028 3.972 26 C -0.124 4.124 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.403 0.597 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.412 0.588 34 H 0.397 0.603 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.304 7.825 -3.845 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.385 5.385 3 C 0.352 3.648 4 O -0.422 6.422 5 C -0.141 4.141 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.090 3.910 9 N -0.325 5.325 10 C 0.398 3.602 11 O -0.456 6.456 12 N -0.381 5.381 13 C 0.016 3.984 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.031 3.969 24 O -0.231 6.231 25 C -0.067 4.067 26 C -0.144 4.144 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.147 0.853 32 H 0.182 0.818 33 H 0.248 0.752 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.788 7.773 -3.395 26.199 hybrid contribution 1.084 -0.243 -0.007 1.111 sum -23.705 7.530 -3.403 25.103 Atomic orbital electron populations 1.21549 0.79280 1.02346 1.02410 1.45709 1.07871 1.08797 1.76129 1.18225 0.87268 0.83607 0.75652 1.90759 1.70135 1.31220 1.50047 1.19512 0.92249 0.93850 1.08496 1.21062 0.93939 0.96612 0.99540 1.21359 0.93583 0.98140 1.00077 1.17114 0.82348 0.91214 1.00342 1.42564 1.04216 1.21112 1.64590 1.16041 0.82674 0.82173 0.79313 1.90851 1.67381 1.38318 1.49057 1.45614 1.04158 1.25381 1.62970 1.21701 0.93742 0.85065 0.97913 1.19346 0.87179 0.98219 0.97842 1.21065 0.91726 1.04475 1.38696 0.92111 1.25001 0.97764 0.96422 0.95164 1.69965 1.08016 1.31675 1.43578 0.86448 0.79797 0.82585 0.78674 1.19554 1.20932 1.20946 1.18466 0.90187 0.85066 1.03225 1.86024 1.35337 1.12273 1.89461 1.23078 0.97215 0.84742 1.01623 1.21005 0.91609 0.99019 1.02787 0.90502 0.92130 0.92131 0.76134 0.85330 0.81795 0.75175 0.76963 0.92418 0.92366 0.95849 0.95861 0.92873 0.88032 0.92492 0.92463 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.19 16 2 N -0.73 -5.76 5.66 -68.13 -0.39 -6.15 16 3 C 0.56 6.40 7.76 -12.45 -0.10 6.30 16 4 O -0.54 -7.84 16.34 5.28 0.09 -7.75 16 5 C -0.14 -1.53 5.87 -104.96 -0.62 -2.15 16 6 C -0.09 -0.95 9.53 -39.21 -0.37 -1.32 16 7 C -0.11 -1.42 8.69 -39.49 -0.34 -1.76 16 8 C 0.19 2.49 6.44 -83.54 -0.54 1.95 16 9 N -0.68 -9.01 5.28 -14.11 -0.07 -9.08 16 10 C 0.70 11.51 8.36 -86.92 -0.73 10.78 16 11 O -0.58 -11.17 13.49 5.29 0.07 -11.10 16 12 N -0.73 -12.12 5.56 -65.23 -0.36 -12.48 16 13 C 0.14 2.81 5.61 -4.04 -0.02 2.79 16 14 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 15 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C 0.08 0.93 6.70 -39.14 -0.26 0.67 16 24 O -0.32 -3.40 9.89 -19.71 -0.19 -3.60 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 C -0.12 -1.42 8.57 -39.06 -0.33 -1.75 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 2.17 6.85 -40.82 -0.28 1.89 16 31 H 0.13 0.91 6.39 -52.48 -0.34 0.58 16 32 H 0.16 2.36 5.77 -52.49 -0.30 2.05 16 33 H 0.41 4.50 8.34 -40.82 -0.34 4.16 16 34 H 0.40 5.65 8.49 -40.82 -0.35 5.31 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 42 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.14 1.52 5.87 -52.48 -0.31 1.22 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -34.21 366.27 -7.49 -41.70 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.63 Total: 6.76 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.24 Total: 5.11 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.66 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.21 -7.49 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599828538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.225 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds