Wall clock time and date at job start Tue Mar 31 2020 13:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21593 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47584 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.06152 * 359.97221 * 5 3 2 7 7 C 1.37744 * 120.02518 * 179.77104 * 6 5 3 8 8 C 1.38980 * 120.12931 * 0.50657 * 7 6 5 9 9 N 1.39639 * 119.94060 * 179.76319 * 8 7 6 10 10 C 1.34773 * 119.99923 * 335.15149 * 9 8 7 11 11 O 1.21583 * 120.00095 * 354.36500 * 10 9 8 12 12 N 1.34778 * 119.99575 * 174.09477 * 10 9 8 13 13 C 1.46503 * 119.99724 * 180.27117 * 12 10 9 14 14 C 1.52997 * 109.46885 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47004 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00284 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00383 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47543 * 119.99453 * 19 17 15 22 22 H 1.48503 * 109.47124 * 239.99712 * 19 17 15 23 23 C 1.39537 * 120.11815 * 359.49407 * 8 7 6 24 24 O 1.35991 * 120.01237 * 180.27183 * 23 8 7 25 25 C 1.42901 * 116.99953 * 179.97438 * 24 23 8 26 26 C 1.38108 * 119.97626 * 0.25142 * 23 8 7 27 27 H 1.08998 * 109.47601 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47451 * 300.00777 * 1 2 3 29 29 H 1.09007 * 109.46689 * 60.00111 * 1 2 3 30 30 H 0.96996 * 119.99339 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.98646 * 0.02562 * 6 5 3 32 32 H 1.07993 * 119.93684 * 180.25844 * 7 6 5 33 33 H 0.96996 * 119.99410 * 155.14350 * 9 8 7 34 34 H 0.96999 * 120.00433 * 0.27808 * 12 10 9 35 35 H 1.09001 * 109.47163 * 300.00242 * 13 12 10 36 36 H 1.08998 * 109.47135 * 60.00253 * 13 12 10 37 37 H 1.09001 * 109.47378 * 300.00062 * 14 13 12 38 38 H 1.08996 * 109.47535 * 60.00385 * 14 13 12 39 39 H 0.97008 * 120.00055 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46638 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.47405 * 300.00592 * 25 24 23 42 42 H 1.09005 * 109.46948 * 60.00852 * 25 24 23 43 43 H 1.08006 * 120.06506 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6148 1.1671 -0.0006 6 6 4.3146 -0.0423 -0.0005 7 6 5.6921 -0.0415 -0.0058 8 6 6.3890 1.1609 -0.0006 9 7 7.7854 1.1571 -0.0010 10 6 8.4565 0.0939 0.4845 11 8 7.8506 -0.8165 1.0158 12 7 9.7987 0.0375 0.3762 13 6 10.5277 -1.1209 0.8986 14 6 12.0259 -0.9351 0.6502 15 6 12.7757 -2.1270 1.1870 16 1 12.2375 -2.9359 1.6586 17 6 14.1488 -2.1843 1.0771 18 7 14.8043 -1.1991 0.5033 19 14 15.0782 -3.6621 1.7419 20 1 14.1165 -4.6257 2.3352 21 1 15.8194 -4.3195 0.6356 22 1 16.0376 -3.2157 2.7839 23 6 5.6959 2.3720 -0.0006 24 8 6.3800 3.5473 -0.0011 25 6 5.6060 4.7485 -0.0017 26 6 4.3148 2.3766 -0.0006 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.9499 -0.8401 0.0004 31 1 3.7753 -0.9780 -0.0005 32 1 6.2315 -0.9770 -0.0100 33 1 8.2723 1.9196 -0.3508 34 1 10.2821 0.7639 -0.0476 35 1 10.3458 -1.2119 1.9695 36 1 10.1846 -2.0240 0.3938 37 1 12.2081 -0.8438 -0.4206 38 1 12.3687 -0.0321 1.1553 39 1 15.7704 -1.2396 0.4256 40 1 6.2731 5.6105 -0.0024 41 1 4.9773 4.7752 -0.8916 42 1 4.9773 4.7760 0.8884 43 1 3.7769 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599828538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:16 Heat of formation + Delta-G solvation = -100.695676 kcal Electronic energy + Delta-G solvation = -25903.639804 eV Core-core repulsion = 21948.357197 eV Total energy + Delta-G solvation = -3955.282607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10713 -41.01161 -40.24965 -38.24500 -36.71268 -35.87217 -35.67764 -34.83408 -32.01820 -31.31340 -30.66532 -28.64419 -27.44039 -26.62549 -24.54036 -23.62999 -22.86930 -22.05533 -21.57260 -19.96715 -19.51442 -18.63621 -18.40363 -17.63626 -17.34221 -16.88632 -16.61467 -16.52290 -16.42303 -16.21196 -16.17236 -15.38896 -15.19292 -15.08082 -14.92629 -14.42831 -14.27010 -14.08846 -13.83245 -13.63413 -13.19883 -13.13449 -12.95457 -12.72015 -12.49467 -12.44729 -12.27564 -12.07645 -11.69907 -11.62710 -11.45169 -11.28102 -10.99304 -10.59772 -10.21310 -10.08812 -9.70752 -8.86465 -8.22786 -6.32606 -0.32389 0.30577 1.42459 1.42701 1.48801 1.57233 1.64384 2.09566 2.13821 2.26652 2.42174 2.79802 3.12555 3.15569 3.68420 3.70787 4.01048 4.02828 4.25886 4.36073 4.38688 4.47738 4.48942 4.54044 4.63992 4.71720 4.75430 4.87491 4.88763 4.96295 5.03845 5.17874 5.24509 5.33663 5.39276 5.50118 5.61067 5.67202 5.78998 5.90464 6.17711 6.26908 6.46736 6.81020 6.91660 7.13730 7.36582 7.39696 8.89220 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.002165 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.226911 B =12932.534453 C =14091.640878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.560 3.440 4 O -0.580 6.580 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.122 4.122 8 C 0.163 3.837 9 N -0.665 5.665 10 C 0.700 3.300 11 O -0.607 6.607 12 N -0.724 5.724 13 C 0.160 3.840 14 C 0.021 3.979 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.083 3.917 24 O -0.327 6.327 25 C 0.020 3.980 26 C -0.129 4.129 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.417 0.583 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.423 0.577 34 H 0.409 0.591 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.512 7.261 -3.800 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.349 3.651 4 O -0.461 6.461 5 C -0.142 4.142 6 C -0.100 4.100 7 C -0.143 4.143 8 C 0.065 3.935 9 N -0.312 5.312 10 C 0.401 3.599 11 O -0.487 6.487 12 N -0.378 5.378 13 C 0.036 3.964 14 C -0.016 4.016 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.205 1.205 23 C 0.035 3.965 24 O -0.242 6.242 25 C -0.074 4.074 26 C -0.149 4.149 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.255 0.745 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.261 0.739 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -26.027 7.219 -3.372 27.219 hybrid contribution 1.333 -0.001 -0.046 1.334 sum -24.694 7.218 -3.418 25.953 Atomic orbital electron populations 1.21740 0.78002 1.04549 1.01746 1.45689 1.08769 1.08373 1.74200 1.18283 0.87232 0.84046 0.75570 1.90742 1.70660 1.32643 1.52100 1.19661 0.92508 0.94081 1.07920 1.21291 0.93028 0.97746 0.97914 1.21317 0.94580 0.97420 1.00962 1.17325 0.82054 0.92073 1.02032 1.42291 1.04469 1.20442 1.63979 1.16024 0.82285 0.82515 0.79084 1.90835 1.67876 1.39643 1.50346 1.45280 1.04430 1.24880 1.63233 1.21171 0.91744 0.86136 0.97360 1.19155 0.89332 0.96687 0.96467 1.21491 0.92473 1.05404 1.38757 0.92051 1.25870 0.98786 0.99267 0.95407 1.70067 1.08434 1.33511 1.44650 0.85400 0.78405 0.79145 0.78109 1.18800 1.20346 1.20455 1.18427 0.90213 0.85228 1.02598 1.86013 1.36182 1.12718 1.89239 1.23351 0.97875 0.83999 1.02155 1.21155 0.91506 0.99619 1.02662 0.86894 0.92896 0.92719 0.74538 0.82045 0.83385 0.73885 0.75550 0.93338 0.92933 0.97168 0.97331 0.92625 0.85812 0.91680 0.92193 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.21 16 2 N -0.72 -9.69 5.66 -487.71 -2.76 -12.45 16 3 C 0.56 11.95 7.76 86.71 0.67 12.63 16 4 O -0.58 -16.37 16.34 -4.01 -0.07 -16.44 16 5 C -0.14 -2.90 5.87 -20.09 -0.12 -3.02 16 6 C -0.08 -1.54 9.53 22.51 0.21 -1.32 16 7 C -0.12 -3.06 8.69 22.33 0.19 -2.87 16 8 C 0.16 4.23 6.44 38.39 0.25 4.48 16 9 N -0.67 -17.41 5.28 -316.82 -1.67 -19.09 16 10 C 0.70 23.06 8.36 179.05 1.50 24.56 16 11 O -0.61 -23.56 13.49 -3.98 -0.05 -23.62 16 12 N -0.72 -24.10 5.56 -478.54 -2.66 -26.76 16 13 C 0.16 6.56 5.61 86.38 0.48 7.04 16 14 C 0.02 1.03 5.09 29.85 0.15 1.18 16 15 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.01 0.29 5.46 84.65 0.46 0.76 16 18 N -0.93 -53.63 13.29 21.44 0.28 -53.34 16 19 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.08 1.92 6.70 22.55 0.15 2.07 16 24 O -0.33 -6.69 9.89 -93.45 -0.92 -7.61 16 25 C 0.02 0.27 9.81 113.37 1.11 1.38 16 26 C -0.13 -2.84 8.57 22.61 0.19 -2.65 16 27 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.42 3.24 6.85 -92.71 -0.63 2.60 16 31 H 0.16 1.85 6.39 -2.91 -0.02 1.83 16 32 H 0.15 4.26 5.77 -2.91 -0.02 4.25 16 33 H 0.42 8.98 8.34 -92.71 -0.77 8.21 16 34 H 0.41 11.58 8.49 -92.71 -0.79 10.80 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 42 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16 43 H 0.15 3.06 5.87 -2.91 -0.02 3.04 16 Total: -1.00 -73.71 366.27 -0.07 -73.78 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -1.11 Total: 23.43 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.86 Total: 17.10 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -6.81 Total: -111.64 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.04 Total: -47.67 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.71 -0.07 -73.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599828538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.915 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds