Wall clock time and date at job start Tue Mar 31 2020 13:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21593 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47584 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.06152 * 359.97221 * 5 3 2 7 7 C 1.37744 * 120.02518 * 179.77104 * 6 5 3 8 8 C 1.38980 * 120.12931 * 0.50657 * 7 6 5 9 9 N 1.39639 * 119.94060 * 179.76319 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14541 * 9 8 7 11 11 O 1.21583 * 119.99710 * 354.33318 * 10 9 8 12 12 N 1.34776 * 119.99986 * 174.05390 * 10 9 8 13 13 C 1.46498 * 119.99964 * 0.28246 * 12 10 9 14 14 C 1.46499 * 119.99612 * 180.27255 * 12 10 9 15 15 C 1.50705 * 109.47024 * 90.00805 * 14 12 10 16 16 H 1.08007 * 119.99500 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00060 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47328 * 59.99771 * 19 17 15 21 21 H 1.48500 * 109.46984 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47063 * 299.99316 * 19 17 15 23 23 C 1.39537 * 120.11815 * 359.49407 * 8 7 6 24 24 O 1.35991 * 120.01237 * 180.27183 * 23 8 7 25 25 C 1.42901 * 116.99953 * 179.97438 * 24 23 8 26 26 C 1.38108 * 119.97626 * 0.25142 * 23 8 7 27 27 H 1.08997 * 109.47451 * 300.00777 * 1 2 3 28 28 H 1.09007 * 109.46689 * 60.00111 * 1 2 3 29 29 H 1.08998 * 109.47601 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99339 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.98646 * 0.02562 * 6 5 3 32 32 H 1.07993 * 119.93684 * 180.25844 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13542 * 9 8 7 34 34 H 1.08997 * 109.47403 * 89.99659 * 13 12 10 35 35 H 1.09000 * 109.46521 * 209.99776 * 13 12 10 36 36 H 1.08999 * 109.46875 * 329.99403 * 13 12 10 37 37 H 1.09000 * 109.47076 * 210.00323 * 14 12 10 38 38 H 1.09001 * 109.47590 * 330.00745 * 14 12 10 39 39 H 0.96999 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46638 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.47405 * 300.00592 * 25 24 23 42 42 H 1.09005 * 109.46948 * 60.00852 * 25 24 23 43 43 H 1.08006 * 120.06506 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6148 1.1671 -0.0006 6 6 4.3146 -0.0423 -0.0005 7 6 5.6921 -0.0415 -0.0058 8 6 6.3890 1.1609 -0.0006 9 7 7.7854 1.1571 -0.0010 10 6 8.4565 0.0940 0.4846 11 8 7.8507 -0.8161 1.0165 12 7 9.7987 0.0372 0.3756 13 6 10.5286 1.1339 -0.2653 14 6 10.5276 -1.1212 0.8981 15 6 10.6480 -2.1671 -0.1802 16 1 10.2236 -1.9870 -1.1569 17 6 11.2991 -3.3542 0.0804 18 7 11.8153 -3.5736 1.2699 19 14 11.4477 -4.6509 -1.2560 20 1 12.1837 -4.0850 -2.4150 21 1 12.1867 -5.8250 -0.7264 22 1 10.0915 -5.0732 -1.6890 23 6 5.6959 2.3720 -0.0006 24 8 6.3800 3.5473 -0.0011 25 6 5.6060 4.7485 -0.0017 26 6 4.3148 2.3766 -0.0006 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.9499 -0.8401 0.0004 31 1 3.7753 -0.9780 -0.0005 32 1 6.2315 -0.9770 -0.0100 33 1 8.2724 1.9195 -0.3509 34 1 10.8033 1.8750 0.4852 35 1 11.4301 0.7433 -0.7373 36 1 9.8954 1.5992 -1.0207 37 1 11.5229 -0.8109 1.2161 38 1 9.9875 -1.5369 1.7487 39 1 12.2737 -4.4086 1.4532 40 1 6.2731 5.6105 -0.0024 41 1 4.9773 4.7752 -0.8916 42 1 4.9773 4.7760 0.8884 43 1 3.7769 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599828811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:20 Heat of formation + Delta-G solvation = -55.736485 kcal Electronic energy + Delta-G solvation = -26838.884965 eV Core-core repulsion = 22885.551934 eV Total energy + Delta-G solvation = -3953.333030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88782 -39.76851 -39.13696 -37.13318 -35.07658 -34.82347 -34.45187 -32.60093 -30.26966 -30.11862 -27.92366 -27.73740 -26.57403 -25.76885 -23.77238 -22.60407 -22.26520 -20.68449 -19.45974 -18.90883 -17.92737 -16.92740 -16.73997 -16.59774 -16.18906 -15.88410 -15.54260 -15.31189 -15.01978 -14.87549 -14.26020 -14.10605 -13.94775 -13.54692 -13.34862 -13.13132 -12.92866 -12.79631 -12.54625 -12.39257 -12.20587 -11.92062 -11.73274 -11.53085 -11.22722 -11.17164 -10.95513 -10.60129 -10.32619 -10.20261 -10.11315 -9.70893 -9.36837 -9.28844 -8.60522 -8.46321 -7.91089 -7.54724 -6.07271 -4.12444 0.80691 1.39827 2.75735 2.99719 3.03325 3.20268 3.30044 3.34633 3.37788 3.64308 4.00116 4.34025 4.46857 4.60209 4.79710 4.90069 4.96042 5.03813 5.04046 5.18763 5.24856 5.26706 5.35328 5.42333 5.51424 5.51819 5.82091 5.86981 5.96156 6.06903 6.13868 6.16392 6.31446 6.57534 6.71302 6.88143 7.28236 7.30123 7.30937 7.43671 7.59892 7.89767 8.04892 8.18728 8.47968 8.87441 9.12632 9.52848 11.00605 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003165 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.453047 B = 8845.483370 C =10387.783879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.565 3.435 4 O -0.546 6.546 5 C -0.142 4.142 6 C -0.090 4.090 7 C -0.112 4.112 8 C 0.195 3.805 9 N -0.682 5.682 10 C 0.697 3.303 11 O -0.566 6.566 12 N -0.609 5.609 13 C 0.081 3.919 14 C 0.259 3.741 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.072 3.928 24 O -0.318 6.318 25 C 0.029 3.971 26 C -0.124 4.124 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.404 0.596 31 H 0.128 0.872 32 H 0.168 0.832 33 H 0.409 0.591 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 12.643 -3.965 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.386 5.386 3 C 0.354 3.646 4 O -0.425 6.425 5 C -0.147 4.147 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.096 3.904 9 N -0.330 5.330 10 C 0.399 3.601 11 O -0.443 6.443 12 N -0.343 5.343 13 C -0.063 4.063 14 C 0.140 3.860 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.025 3.975 24 O -0.232 6.232 25 C -0.066 4.066 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.239 0.761 31 H 0.146 0.854 32 H 0.185 0.815 33 H 0.246 0.754 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.697 12.568 -3.452 20.403 hybrid contribution 0.406 -0.617 -0.900 1.164 sum -15.292 11.951 -4.351 19.890 Atomic orbital electron populations 1.21535 0.79409 1.02279 1.02320 1.45718 1.07805 1.08885 1.76178 1.18238 0.87317 0.83532 0.75492 1.90744 1.70196 1.31249 1.50289 1.19469 0.92104 0.93878 1.09243 1.21072 0.93998 0.96529 0.99349 1.21455 0.93546 0.98455 0.99788 1.17169 0.82733 0.91086 0.99460 1.42833 1.03959 1.21473 1.64720 1.15919 0.82614 0.81863 0.79713 1.90843 1.66680 1.37962 1.48768 1.47529 1.03659 1.22761 1.60384 1.21634 0.98091 0.89930 0.96664 1.19286 0.90851 0.80624 0.95257 1.21405 1.35993 1.01065 0.98298 0.92465 1.24923 0.95343 0.98039 0.95710 1.69918 1.37077 1.25646 1.20687 0.86550 0.78256 0.80859 0.81687 1.20280 1.21177 1.20159 1.18454 0.90175 0.84953 1.03960 1.86012 1.35299 1.12253 1.89654 1.23046 0.97146 0.84851 1.01557 1.20957 0.91581 0.98876 1.02963 0.92192 0.92202 0.90554 0.76074 0.85419 0.81512 0.75423 0.93471 0.90102 0.92964 0.94670 0.93547 0.92600 0.88222 0.92599 0.92554 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.73 -6.98 5.66 -68.13 -0.39 -7.36 16 3 C 0.57 7.34 7.76 -12.45 -0.10 7.24 16 4 O -0.55 -8.64 16.34 5.28 0.09 -8.56 16 5 C -0.14 -1.87 5.87 -104.96 -0.62 -2.49 16 6 C -0.09 -1.15 9.53 -39.21 -0.37 -1.52 16 7 C -0.11 -1.77 8.69 -39.49 -0.34 -2.11 16 8 C 0.19 3.10 6.44 -83.54 -0.54 2.56 16 9 N -0.68 -11.27 5.10 -14.11 -0.07 -11.35 16 10 C 0.70 14.48 8.08 -86.92 -0.70 13.78 16 11 O -0.57 -13.69 13.07 5.29 0.07 -13.62 16 12 N -0.61 -12.66 2.86 -188.74 -0.54 -13.20 16 13 C 0.08 1.24 10.16 59.85 0.61 1.85 16 14 C 0.26 6.60 5.16 -5.19 -0.03 6.57 16 15 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 19 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.07 1.00 6.70 -39.14 -0.26 0.74 16 24 O -0.32 -3.90 9.89 -19.71 -0.19 -4.09 16 25 C 0.03 0.24 9.81 101.05 0.99 1.24 16 26 C -0.12 -1.63 8.57 -39.06 -0.33 -1.97 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.40 2.92 6.85 -40.82 -0.28 2.64 16 31 H 0.13 1.22 6.39 -52.48 -0.34 0.89 16 32 H 0.17 3.07 5.77 -52.49 -0.30 2.76 16 33 H 0.41 5.70 6.13 -40.82 -0.25 5.45 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 36 H 0.05 0.66 6.45 -51.93 -0.33 0.32 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 42 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.14 1.72 5.87 -52.48 -0.31 1.41 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -35.06 362.54 -6.82 -41.88 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.49 Total: 5.87 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -1.47 Total: 13.91 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.26 Total: -57.23 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.06 -6.82 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599828811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.856 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds