Wall clock time and date at job start Tue Mar 31 2020 13:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21593 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47584 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.06152 * 359.97221 * 5 3 2 7 7 C 1.37744 * 120.02518 * 179.77104 * 6 5 3 8 8 C 1.38980 * 120.12931 * 0.50657 * 7 6 5 9 9 N 1.39639 * 119.94060 * 179.76319 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14541 * 9 8 7 11 11 O 1.21583 * 119.99710 * 354.33318 * 10 9 8 12 12 N 1.34776 * 119.99986 * 174.05390 * 10 9 8 13 13 C 1.46498 * 119.99964 * 0.28246 * 12 10 9 14 14 C 1.46499 * 119.99612 * 180.27255 * 12 10 9 15 15 C 1.50705 * 109.47024 * 90.00805 * 14 12 10 16 16 H 1.08007 * 119.99500 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00060 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47328 * 59.99771 * 19 17 15 21 21 H 1.48500 * 109.46984 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47063 * 299.99316 * 19 17 15 23 23 C 1.39537 * 120.11815 * 359.49407 * 8 7 6 24 24 O 1.35991 * 120.01237 * 180.27183 * 23 8 7 25 25 C 1.42901 * 116.99953 * 179.97438 * 24 23 8 26 26 C 1.38108 * 119.97626 * 0.25142 * 23 8 7 27 27 H 1.08997 * 109.47451 * 300.00777 * 1 2 3 28 28 H 1.09007 * 109.46689 * 60.00111 * 1 2 3 29 29 H 1.08998 * 109.47601 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99339 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.98646 * 0.02562 * 6 5 3 32 32 H 1.07993 * 119.93684 * 180.25844 * 7 6 5 33 33 H 0.97000 * 119.99808 * 155.13542 * 9 8 7 34 34 H 1.08997 * 109.47403 * 89.99659 * 13 12 10 35 35 H 1.09000 * 109.46521 * 209.99776 * 13 12 10 36 36 H 1.08999 * 109.46875 * 329.99403 * 13 12 10 37 37 H 1.09000 * 109.47076 * 210.00323 * 14 12 10 38 38 H 1.09001 * 109.47590 * 330.00745 * 14 12 10 39 39 H 0.96999 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.46638 * 180.02562 * 25 24 23 41 41 H 1.08993 * 109.47405 * 300.00592 * 25 24 23 42 42 H 1.09005 * 109.46948 * 60.00852 * 25 24 23 43 43 H 1.08006 * 120.06506 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6148 1.1671 -0.0006 6 6 4.3146 -0.0423 -0.0005 7 6 5.6921 -0.0415 -0.0058 8 6 6.3890 1.1609 -0.0006 9 7 7.7854 1.1571 -0.0010 10 6 8.4565 0.0940 0.4846 11 8 7.8507 -0.8161 1.0165 12 7 9.7987 0.0372 0.3756 13 6 10.5286 1.1339 -0.2653 14 6 10.5276 -1.1212 0.8981 15 6 10.6480 -2.1671 -0.1802 16 1 10.2236 -1.9870 -1.1569 17 6 11.2991 -3.3542 0.0804 18 7 11.8153 -3.5736 1.2699 19 14 11.4477 -4.6509 -1.2560 20 1 12.1837 -4.0850 -2.4150 21 1 12.1867 -5.8250 -0.7264 22 1 10.0915 -5.0732 -1.6890 23 6 5.6959 2.3720 -0.0006 24 8 6.3800 3.5473 -0.0011 25 6 5.6060 4.7485 -0.0017 26 6 4.3148 2.3766 -0.0006 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.9499 -0.8401 0.0004 31 1 3.7753 -0.9780 -0.0005 32 1 6.2315 -0.9770 -0.0100 33 1 8.2724 1.9195 -0.3509 34 1 10.8033 1.8750 0.4852 35 1 11.4301 0.7433 -0.7373 36 1 9.8954 1.5992 -1.0207 37 1 11.5229 -0.8109 1.2161 38 1 9.9875 -1.5369 1.7487 39 1 12.2737 -4.4086 1.4532 40 1 6.2731 5.6105 -0.0024 41 1 4.9773 4.7752 -0.8916 42 1 4.9773 4.7760 0.8884 43 1 3.7769 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599828811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:19 Heat of formation + Delta-G solvation = -81.387694 kcal Electronic energy + Delta-G solvation = -26839.997284 eV Core-core repulsion = 22885.551934 eV Total energy + Delta-G solvation = -3954.445350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09752 -41.00930 -40.23564 -38.23963 -36.70462 -35.93380 -35.68390 -34.62189 -31.42570 -31.24845 -29.60437 -28.61509 -27.59712 -27.10715 -25.33699 -23.93565 -23.50704 -21.68737 -20.93650 -19.95202 -19.23505 -18.66112 -18.32778 -17.62899 -17.30772 -16.85457 -16.77880 -16.49886 -16.37736 -16.20486 -15.92956 -15.20240 -15.01916 -14.83640 -14.68871 -14.33017 -14.08077 -13.89818 -13.83134 -13.54824 -13.45993 -13.13791 -13.12557 -12.79694 -12.69058 -12.52435 -12.40763 -12.15904 -12.06157 -11.76308 -11.58950 -11.26635 -10.87663 -10.61091 -10.20524 -9.74493 -9.51164 -8.81859 -8.19037 -6.33996 -0.30687 0.31251 1.39939 1.43527 1.50148 1.58087 1.71251 2.14292 2.19635 2.27694 2.41589 2.81534 2.99329 3.10965 3.68066 3.72182 4.00050 4.03976 4.23054 4.32275 4.38489 4.41281 4.48066 4.63283 4.63808 4.73647 4.77654 4.80364 4.89940 4.95092 4.99595 5.07051 5.20228 5.22185 5.33735 5.41387 5.55196 5.69329 5.78287 6.02549 6.07722 6.29378 6.45746 6.74167 6.97394 7.12880 7.32319 7.55980 8.87304 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003165 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.453047 B = 8845.483370 C =10387.783879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.563 3.437 4 O -0.578 6.578 5 C -0.139 4.139 6 C -0.081 4.081 7 C -0.127 4.127 8 C 0.165 3.835 9 N -0.666 5.666 10 C 0.694 3.306 11 O -0.609 6.609 12 N -0.617 5.617 13 C 0.076 3.924 14 C 0.275 3.725 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.276 1.276 23 C 0.084 3.916 24 O -0.327 6.327 25 C 0.020 3.980 26 C -0.126 4.126 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.158 0.842 32 H 0.138 0.862 33 H 0.421 0.579 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.003 0.997 39 H 0.267 0.733 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 13.446 -5.421 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.351 3.649 4 O -0.460 6.460 5 C -0.143 4.143 6 C -0.100 4.100 7 C -0.148 4.148 8 C 0.067 3.933 9 N -0.315 5.315 10 C 0.396 3.604 11 O -0.489 6.489 12 N -0.351 5.351 13 C -0.066 4.066 14 C 0.154 3.846 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.202 1.202 23 C 0.036 3.964 24 O -0.241 6.241 25 C -0.074 4.074 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.254 0.746 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.916 13.414 -4.942 22.148 hybrid contribution 0.655 -0.768 -0.421 1.093 sum -16.261 12.647 -5.363 21.287 Atomic orbital electron populations 1.21745 0.77906 1.04520 1.01832 1.45717 1.08849 1.08400 1.74239 1.18223 0.87095 0.84043 0.75531 1.90730 1.70585 1.32512 1.52141 1.19641 0.92583 0.93926 1.08172 1.21250 0.92817 0.97880 0.98043 1.21290 0.94763 0.97476 1.01302 1.17363 0.82257 0.92107 1.01571 1.42458 1.04336 1.20509 1.64153 1.16041 0.82518 0.82319 0.79538 1.90813 1.67617 1.39877 1.50626 1.47390 1.04010 1.22922 1.60823 1.21908 0.98057 0.88757 0.97876 1.18747 0.90193 0.82032 0.93651 1.21670 1.35918 1.02042 0.98489 0.92834 1.25812 0.94871 1.00221 0.98002 1.70037 1.37736 1.26375 1.22601 0.85487 0.78228 0.78097 0.79106 1.18697 1.20475 1.20181 1.18349 0.90178 0.85051 1.02791 1.86007 1.36163 1.12629 1.89282 1.23372 0.97947 0.83935 1.02178 1.21153 0.91374 0.99572 1.02513 0.92780 0.92588 0.87008 0.74649 0.82404 0.84439 0.73948 0.90955 0.90443 0.89934 0.95246 0.97842 0.92380 0.85565 0.91658 0.92204 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.70 127.77 1.37 2.42 16 2 N -0.72 -12.05 5.66 -487.71 -2.76 -14.81 16 3 C 0.56 13.68 7.76 86.71 0.67 14.35 16 4 O -0.58 -17.58 16.34 -4.01 -0.07 -17.64 16 5 C -0.14 -3.46 5.87 -20.09 -0.12 -3.57 16 6 C -0.08 -1.99 9.53 22.51 0.21 -1.77 16 7 C -0.13 -4.11 8.69 22.33 0.19 -3.91 16 8 C 0.17 5.24 6.44 38.39 0.25 5.49 16 9 N -0.67 -21.98 5.10 -316.82 -1.61 -23.59 16 10 C 0.69 29.63 8.08 179.06 1.45 31.07 16 11 O -0.61 -31.01 13.07 -3.98 -0.05 -31.06 16 12 N -0.62 -26.16 2.86 -869.32 -2.48 -28.64 16 13 C 0.08 2.26 10.16 127.77 1.30 3.56 16 14 C 0.28 14.59 5.16 85.63 0.44 15.03 16 15 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 17 C 0.01 0.57 5.46 84.66 0.46 1.03 16 18 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 19 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.08 2.25 6.70 22.55 0.15 2.40 16 24 O -0.33 -7.42 9.89 -93.45 -0.92 -8.34 16 25 C 0.02 0.28 9.81 113.37 1.11 1.40 16 26 C -0.13 -3.16 8.57 22.61 0.19 -2.96 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.42 4.87 6.85 -92.71 -0.63 4.24 16 31 H 0.16 2.75 6.39 -2.91 -0.02 2.73 16 32 H 0.14 5.34 5.77 -2.91 -0.02 5.32 16 33 H 0.42 11.26 6.13 -92.71 -0.57 10.70 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.08 1.92 6.45 -2.39 -0.02 1.90 16 37 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 39 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 42 H 0.06 0.84 7.66 -2.38 -0.02 0.82 16 43 H 0.15 3.45 5.87 -2.91 -0.02 3.44 16 Total: -1.00 -78.80 362.54 2.20 -76.60 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -0.13 Total: 22.21 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 7.92 Total: 34.13 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -6.57 Total: -121.97 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -1.04 Total: -57.04 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.80 2.20 -76.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599828811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.786 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds