Wall clock time and date at job start Tue Mar 31 2020 13:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35509 * 117.00089 * 2 1 4 4 C 1.39209 * 120.89734 * 359.97438 * 3 2 1 5 5 C 1.37907 * 119.38711 * 180.02562 * 4 3 2 6 6 N 1.32078 * 121.29141 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.97736 * 359.95163 * 6 5 4 8 8 O 1.35426 * 119.77361 * 180.02562 * 7 6 5 9 9 C 1.42905 * 117.00020 * 0.03096 * 8 7 6 10 10 C 1.40288 * 120.44709 * 0.05295 * 7 6 5 11 11 C 1.47231 * 120.65324 * 179.97438 * 10 7 6 12 12 O 1.21620 * 119.99641 * 269.97435 * 11 10 7 13 13 N 1.34778 * 120.00156 * 89.97101 * 11 10 7 14 14 C 1.46968 * 120.59224 * 359.72484 * 13 11 10 15 15 C 1.53810 * 108.39803 * 124.75327 * 14 13 11 16 16 N 1.46973 * 108.57695 * 49.63881 * 15 14 13 17 17 C 1.36934 * 120.59406 * 124.62525 * 16 15 14 18 18 H 1.07997 * 119.99807 * 208.17562 * 17 16 15 19 19 C 1.38815 * 120.00236 * 28.17320 * 17 16 15 20 20 N 1.31616 * 119.99912 * 17.57004 * 19 17 16 21 21 Si 1.86794 * 120.00171 * 197.56953 * 19 17 16 22 22 H 1.48504 * 109.47126 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47235 * 119.99954 * 21 19 17 24 24 H 1.48496 * 109.47348 * 240.00311 * 21 19 17 25 25 C 1.46968 * 118.80915 * 304.64108 * 16 15 14 26 26 C 1.46965 * 120.59128 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46736 * 299.99983 * 1 2 3 29 29 H 1.08995 * 109.47162 * 60.00251 * 1 2 3 30 30 H 1.07998 * 120.30717 * 359.74475 * 4 3 2 31 31 H 1.07997 * 119.34944 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46770 * 299.99539 * 9 8 7 33 33 H 1.08993 * 109.47458 * 59.99883 * 9 8 7 34 34 H 1.09008 * 109.46854 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.60640 * 244.53765 * 14 13 11 36 36 H 1.09000 * 109.60968 * 5.05095 * 14 13 11 37 37 H 1.09003 * 109.74352 * 289.84906 * 15 14 13 38 38 H 1.08999 * 109.53409 * 169.30178 * 15 14 13 39 39 H 0.97002 * 120.00411 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.61087 * 295.48549 * 25 16 15 41 41 H 1.08997 * 109.60559 * 174.97251 * 25 16 15 42 42 H 1.08999 * 109.61267 * 354.95487 * 26 13 11 43 43 H 1.09005 * 109.60301 * 115.29247 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9627 3.5985 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 -0.0007 8 8 5.3847 2.6942 -0.0007 9 6 5.9204 4.0190 -0.0011 10 6 3.4472 1.3030 -0.0002 11 6 4.2822 0.0903 0.0002 12 8 4.6267 -0.4111 -1.0529 13 7 4.6649 -0.4640 1.1676 14 6 4.2611 0.1346 2.4477 15 6 3.5469 -0.9414 3.2830 16 7 4.3804 -2.1518 3.2987 17 6 4.7699 -2.7145 4.4847 18 1 5.6918 -3.2744 4.5398 19 6 3.9799 -2.5652 5.6163 20 7 2.7213 -2.1994 5.4966 21 14 4.7030 -2.8836 7.3090 22 1 6.1275 -3.2802 7.1721 23 1 4.6091 -1.6483 8.1278 24 1 3.9473 -3.9761 7.9727 25 6 4.7887 -2.7472 2.0185 26 6 5.4979 -1.6746 1.1832 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2250 2.3528 -0.0051 31 1 1.3882 4.5129 -0.0010 32 1 5.5802 4.5481 -0.8912 33 1 5.5803 4.5487 0.8887 34 1 7.0094 3.9706 -0.0006 35 1 5.1437 0.4890 2.9803 36 1 3.5825 0.9676 2.2642 37 1 2.5783 -1.1700 2.8383 38 1 3.4082 -0.5796 4.3018 39 1 2.1692 -2.0947 6.2874 40 1 3.9086 -3.1043 1.4839 41 1 5.4702 -3.5778 2.2023 42 1 5.6363 -2.0367 0.1645 43 1 6.4678 -1.4456 1.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:25 Heat of formation + Delta-G solvation = -28.123699 kcal Electronic energy + Delta-G solvation = -28591.304933 eV Core-core repulsion = 24639.169283 eV Total energy + Delta-G solvation = -3952.135650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16093 -39.20938 -39.04326 -37.34189 -36.63048 -33.77337 -32.22451 -31.11947 -30.75660 -30.02366 -28.04368 -27.11393 -26.75980 -24.69354 -23.35516 -22.65995 -22.56500 -20.72236 -19.17255 -18.69018 -17.73736 -17.39769 -16.59173 -16.34832 -16.04198 -15.70016 -15.56803 -15.22288 -14.73126 -14.57984 -14.29085 -13.87076 -13.63660 -13.43733 -13.36962 -13.25011 -13.21600 -12.82904 -12.16812 -11.94668 -11.78722 -11.62252 -11.53523 -11.31355 -11.22080 -10.83807 -10.68594 -10.45155 -10.24017 -10.13634 -9.96166 -9.79173 -9.35487 -8.95861 -8.63386 -8.56179 -8.14468 -6.67756 -5.83681 -3.27183 0.88335 1.21000 2.59142 2.99898 3.34262 3.37261 3.42517 3.44241 3.46276 3.67290 4.20688 4.46037 4.51969 4.78001 4.89928 4.98631 5.05989 5.17556 5.23820 5.25025 5.31436 5.39713 5.42071 5.48215 5.61029 5.78220 5.87020 5.94155 5.96996 6.03499 6.20859 6.28331 6.42267 6.51173 6.84804 6.99888 7.03465 7.11247 7.28160 7.49724 7.69377 7.74717 7.99444 8.37962 8.64288 9.14341 9.77314 10.35079 11.24039 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004365 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.650018 B = 6412.554904 C = 6796.644445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.235 3.765 4 C -0.299 4.299 5 C 0.184 3.816 6 N -0.562 5.562 7 C 0.383 3.617 8 O -0.294 6.294 9 C 0.041 3.959 10 C -0.222 4.222 11 C 0.583 3.417 12 O -0.550 6.550 13 N -0.583 5.583 14 C 0.088 3.912 15 C 0.162 3.838 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.133 3.867 26 C 0.097 3.903 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.098 0.902 39 H 0.253 0.747 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 12.635 -10.243 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.201 6.201 3 C 0.179 3.821 4 C -0.321 4.321 5 C 0.029 3.971 6 N -0.290 5.290 7 C 0.204 3.796 8 O -0.200 6.200 9 C -0.054 4.054 10 C -0.229 4.229 11 C 0.369 3.631 12 O -0.429 6.429 13 N -0.314 5.314 14 C -0.037 4.037 15 C 0.035 3.965 16 N -0.314 5.314 17 C -0.381 4.381 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.006 3.994 26 C -0.027 4.027 27 H 0.126 0.874 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.528 12.707 -10.630 16.759 hybrid contribution -0.554 -0.432 1.038 1.254 sum -3.082 12.275 -9.591 15.880 Atomic orbital electron populations 1.23233 0.76984 1.04984 1.01639 1.86148 1.22404 1.25380 1.86138 1.18871 0.89901 0.85333 0.87956 1.21971 1.01768 0.92446 1.15887 1.22214 0.88451 0.97225 0.89195 1.67396 1.07965 1.30307 1.23323 1.19295 0.84447 0.87474 0.88363 1.86267 1.15390 1.31702 1.86626 1.22924 0.98646 0.81246 1.02557 1.18921 0.91480 0.93726 1.18788 1.17427 0.79284 0.82491 0.83862 1.90721 1.57372 1.63544 1.31230 1.47925 1.50463 1.27327 1.05654 1.22661 0.99555 0.97407 0.84043 1.21222 0.91126 0.84832 0.99318 1.43993 1.60221 1.26548 1.00600 1.19262 1.02186 1.30523 0.86140 0.91405 1.25049 0.94666 1.01053 0.98847 1.70034 1.04816 1.51704 1.28183 0.86219 0.78687 0.77464 0.84395 1.20180 1.21539 1.21723 1.21294 0.96957 0.93514 0.87676 1.22220 0.93517 0.85644 1.01302 0.87442 0.91757 0.92248 0.83551 0.81757 0.92114 0.91943 0.88426 0.91895 0.92029 0.95764 0.88411 0.93651 0.95746 0.91484 0.89950 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.84 101.05 0.99 1.26 16 2 O -0.29 -4.62 10.03 -18.22 -0.18 -4.80 16 3 C 0.23 3.63 6.64 -38.32 -0.25 3.37 16 4 C -0.30 -3.42 9.09 -39.34 -0.36 -3.78 16 5 C 0.18 2.01 11.15 -17.57 -0.20 1.81 16 6 N -0.56 -7.66 9.20 -13.06 -0.12 -7.78 16 7 C 0.38 6.19 7.51 -16.63 -0.12 6.06 16 8 O -0.29 -4.66 9.93 -17.97 -0.18 -4.83 16 9 C 0.04 0.45 10.38 101.05 1.05 1.50 16 10 C -0.22 -3.96 3.64 -104.57 -0.38 -4.34 16 11 C 0.58 12.08 6.30 -12.61 -0.08 12.00 16 12 O -0.55 -12.77 16.51 5.26 0.09 -12.68 16 13 N -0.58 -11.96 2.94 -173.58 -0.51 -12.47 16 14 C 0.09 1.77 6.53 -3.37 -0.02 1.75 16 15 C 0.16 3.85 5.53 -3.36 -0.02 3.83 16 16 N -0.59 -14.82 2.97 -171.78 -0.51 -15.32 16 17 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 18 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 19 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 20 N -0.90 -25.56 11.20 55.49 0.62 -24.94 16 21 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.90 6.67 -3.62 -0.02 2.88 16 26 C 0.10 1.94 6.59 -3.62 -0.02 1.91 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.57 7.71 -51.93 -0.40 0.17 16 29 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 30 H 0.15 1.18 6.45 -52.49 -0.34 0.84 16 31 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.16 6.24 -51.93 -0.32 0.84 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 2.54 5.99 -51.93 -0.31 2.23 16 39 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 42 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -34.45 356.36 -6.02 -40.47 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.90 Total: -0.55 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 0.33 Total: 21.31 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.52 Total: -60.51 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.27 Total: -22.32 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.45 -6.02 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.348 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds