Wall clock time and date at job start Tue Mar 31 2020 13:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35509 * 117.00089 * 2 1 4 4 C 1.39209 * 120.89734 * 359.97438 * 3 2 1 5 5 C 1.37907 * 119.38711 * 180.02562 * 4 3 2 6 6 N 1.32078 * 121.29141 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.97736 * 359.95163 * 6 5 4 8 8 O 1.35426 * 119.77361 * 180.02562 * 7 6 5 9 9 C 1.42905 * 117.00020 * 0.03096 * 8 7 6 10 10 C 1.40288 * 120.44709 * 0.05295 * 7 6 5 11 11 C 1.47231 * 120.65324 * 179.97438 * 10 7 6 12 12 O 1.21620 * 119.99641 * 269.97435 * 11 10 7 13 13 N 1.34778 * 120.00156 * 89.97101 * 11 10 7 14 14 C 1.46968 * 120.59224 * 359.72484 * 13 11 10 15 15 C 1.53810 * 108.39803 * 124.75327 * 14 13 11 16 16 N 1.46973 * 108.57695 * 49.63881 * 15 14 13 17 17 C 1.36934 * 120.59406 * 124.62525 * 16 15 14 18 18 H 1.07997 * 119.99807 * 208.17562 * 17 16 15 19 19 C 1.38815 * 120.00236 * 28.17320 * 17 16 15 20 20 N 1.31616 * 119.99912 * 17.57004 * 19 17 16 21 21 Si 1.86794 * 120.00171 * 197.56953 * 19 17 16 22 22 H 1.48504 * 109.47126 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47235 * 119.99954 * 21 19 17 24 24 H 1.48496 * 109.47348 * 240.00311 * 21 19 17 25 25 C 1.46968 * 118.80915 * 304.64108 * 16 15 14 26 26 C 1.46965 * 120.59128 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46736 * 299.99983 * 1 2 3 29 29 H 1.08995 * 109.47162 * 60.00251 * 1 2 3 30 30 H 1.07998 * 120.30717 * 359.74475 * 4 3 2 31 31 H 1.07997 * 119.34944 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46770 * 299.99539 * 9 8 7 33 33 H 1.08993 * 109.47458 * 59.99883 * 9 8 7 34 34 H 1.09008 * 109.46854 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.60640 * 244.53765 * 14 13 11 36 36 H 1.09000 * 109.60968 * 5.05095 * 14 13 11 37 37 H 1.09003 * 109.74352 * 289.84906 * 15 14 13 38 38 H 1.08999 * 109.53409 * 169.30178 * 15 14 13 39 39 H 0.97002 * 120.00411 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.61087 * 295.48549 * 25 16 15 41 41 H 1.08997 * 109.60559 * 174.97251 * 25 16 15 42 42 H 1.08999 * 109.61267 * 354.95487 * 26 13 11 43 43 H 1.09005 * 109.60301 * 115.29247 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9627 3.5985 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 -0.0007 8 8 5.3847 2.6942 -0.0007 9 6 5.9204 4.0190 -0.0011 10 6 3.4472 1.3030 -0.0002 11 6 4.2822 0.0903 0.0002 12 8 4.6267 -0.4111 -1.0529 13 7 4.6649 -0.4640 1.1676 14 6 4.2611 0.1346 2.4477 15 6 3.5469 -0.9414 3.2830 16 7 4.3804 -2.1518 3.2987 17 6 4.7699 -2.7145 4.4847 18 1 5.6918 -3.2744 4.5398 19 6 3.9799 -2.5652 5.6163 20 7 2.7213 -2.1994 5.4966 21 14 4.7030 -2.8836 7.3090 22 1 6.1275 -3.2802 7.1721 23 1 4.6091 -1.6483 8.1278 24 1 3.9473 -3.9761 7.9727 25 6 4.7887 -2.7472 2.0185 26 6 5.4979 -1.6746 1.1832 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2250 2.3528 -0.0051 31 1 1.3882 4.5129 -0.0010 32 1 5.5802 4.5481 -0.8912 33 1 5.5803 4.5487 0.8887 34 1 7.0094 3.9706 -0.0006 35 1 5.1437 0.4890 2.9803 36 1 3.5825 0.9676 2.2642 37 1 2.5783 -1.1700 2.8383 38 1 3.4082 -0.5796 4.3018 39 1 2.1692 -2.0947 6.2874 40 1 3.9086 -3.1043 1.4839 41 1 5.4702 -3.5778 2.2023 42 1 5.6363 -2.0367 0.1645 43 1 6.4678 -1.4456 1.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:25 Heat of formation + Delta-G solvation = -53.772376 kcal Electronic energy + Delta-G solvation = -28592.417143 eV Core-core repulsion = 24639.169283 eV Total energy + Delta-G solvation = -3953.247860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28514 -40.59184 -40.25081 -38.42557 -38.35157 -35.62210 -33.66842 -32.71207 -31.92642 -31.68429 -28.90911 -28.80065 -27.77997 -26.14494 -25.04515 -24.36007 -23.57307 -22.37781 -20.61922 -19.94526 -19.07372 -18.73958 -17.89555 -17.69383 -17.47704 -17.06854 -16.67695 -16.60054 -16.15609 -15.98180 -15.57405 -15.48722 -15.24403 -15.07407 -14.86268 -14.70967 -14.27890 -14.01250 -13.71495 -13.38746 -13.24748 -12.80724 -12.71381 -12.62755 -12.52876 -12.46075 -12.23400 -12.15110 -12.06814 -11.94247 -11.70011 -11.37626 -10.71088 -10.61165 -10.03368 -9.88739 -9.69169 -8.68532 -7.89412 -5.37393 -0.15120 0.17080 1.44682 1.48823 1.50533 1.60915 1.62561 1.97909 2.42633 2.50965 2.58545 3.22935 3.25572 3.45718 3.54968 3.73232 3.93061 4.09238 4.17521 4.19034 4.26778 4.33967 4.35203 4.38949 4.43794 4.47799 4.55381 4.62453 4.68833 4.69814 4.75349 4.77919 4.89831 5.02951 5.12716 5.18097 5.46478 5.56548 5.63915 6.06693 6.11356 6.33997 6.37343 6.70571 7.04905 7.09169 7.76048 8.31520 9.16694 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004365 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.650018 B = 6412.554904 C = 6796.644445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.221 3.779 4 C -0.287 4.287 5 C 0.194 3.806 6 N -0.563 5.563 7 C 0.376 3.624 8 O -0.322 6.322 9 C 0.037 3.963 10 C -0.265 4.265 11 C 0.585 3.415 12 O -0.585 6.585 13 N -0.588 5.588 14 C 0.108 3.892 15 C 0.174 3.826 16 N -0.606 5.606 17 C -0.266 4.266 18 H 0.071 0.929 19 C -0.044 4.044 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.293 1.293 25 C 0.135 3.865 26 C 0.104 3.896 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.185 0.815 31 H 0.216 0.784 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.077 0.923 37 H -0.001 1.001 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.009 0.991 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 14.679 -10.106 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.166 3.834 4 C -0.308 4.308 5 C 0.040 3.960 6 N -0.292 5.292 7 C 0.197 3.803 8 O -0.228 6.228 9 C -0.057 4.057 10 C -0.272 4.272 11 C 0.373 3.627 12 O -0.467 6.467 13 N -0.319 5.319 14 C -0.016 4.016 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.089 0.911 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.220 1.220 25 C 0.009 3.991 26 C -0.020 4.020 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.203 0.797 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.017 0.983 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.102 14.762 -10.504 18.382 hybrid contribution -0.464 -1.052 0.935 1.482 sum -3.566 13.710 -9.569 17.096 Atomic orbital electron populations 1.23551 0.74499 1.05979 1.03685 1.86094 1.25187 1.26458 1.86264 1.19163 0.89449 0.86526 0.88237 1.22381 1.03454 0.90933 1.13996 1.23121 0.87722 0.98928 0.86251 1.67540 1.09164 1.28933 1.23523 1.19365 0.84853 0.87478 0.88579 1.86224 1.15678 1.34280 1.86611 1.23182 0.99724 0.79620 1.03171 1.18933 0.92455 0.92974 1.22873 1.17920 0.78677 0.83062 0.83024 1.90673 1.58765 1.64968 1.32248 1.48009 1.50534 1.27445 1.05879 1.22360 0.99487 0.96387 0.83387 1.20969 0.90437 0.85491 0.98334 1.44233 1.60303 1.27210 1.01189 1.19572 1.02334 1.30561 0.87064 0.91130 1.25790 0.94911 1.01209 1.02111 1.70172 1.05940 1.52811 1.28909 0.85189 0.78237 0.76979 0.79891 1.19163 1.21385 1.22016 1.21334 0.96673 0.94489 0.86628 1.22104 0.93647 0.85183 1.01040 0.87228 0.90316 0.89403 0.79739 0.76806 0.91378 0.91331 0.86441 0.91533 0.90519 0.98270 0.90648 0.93859 0.97332 0.90295 0.89653 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.84 113.37 1.12 1.42 16 2 O -0.33 -10.44 10.03 -88.11 -0.88 -11.33 16 3 C 0.22 6.65 6.64 23.09 0.15 6.80 16 4 C -0.29 -5.63 9.09 22.42 0.20 -5.42 16 5 C 0.19 3.47 11.15 84.58 0.94 4.41 16 6 N -0.56 -13.99 9.20 -308.27 -2.84 -16.83 16 7 C 0.38 11.85 7.51 85.14 0.64 12.49 16 8 O -0.32 -10.06 9.93 -87.22 -0.87 -10.93 16 9 C 0.04 0.76 10.38 113.37 1.18 1.94 16 10 C -0.27 -9.45 3.64 -19.83 -0.07 -9.53 16 11 C 0.59 24.79 6.30 86.61 0.55 25.34 16 12 O -0.59 -28.05 16.51 -4.09 -0.07 -28.12 16 13 N -0.59 -24.58 2.94 -821.32 -2.42 -26.99 16 14 C 0.11 4.42 6.53 86.56 0.57 4.99 16 15 C 0.17 8.52 5.53 86.56 0.48 8.99 16 16 N -0.61 -30.94 2.97 -697.40 -2.07 -33.01 16 17 C -0.27 -14.41 9.58 84.03 0.80 -13.61 16 18 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 19 C -0.04 -2.42 4.90 84.86 0.42 -2.01 16 20 N -0.93 -53.63 11.20 21.65 0.24 -53.39 16 21 Si 0.97 43.74 29.59 68.60 2.03 45.77 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 25 C 0.14 6.03 6.67 86.40 0.58 6.60 16 26 C 0.10 4.22 6.59 86.40 0.57 4.78 16 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.24 7.71 -2.39 -0.02 1.22 16 29 H 0.09 1.13 7.70 -2.39 -0.02 1.11 16 30 H 0.19 2.08 6.45 -2.91 -0.02 2.06 16 31 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.08 2.92 6.24 -2.39 -0.01 2.90 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.08 4.03 5.99 -2.39 -0.01 4.01 16 39 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 3.27 7.93 -2.39 -0.02 3.25 16 42 H 0.09 3.41 6.99 -2.39 -0.02 3.39 16 43 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -76.89 356.36 2.28 -74.61 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.03 Total: 13.00 kcal Atomic # 6 Polarization: 39.09 SS G_CDS: 8.12 Total: 47.21 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -7.08 Total: -130.22 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.82 Total: -50.37 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -76.89 2.28 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.841 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds