Wall clock time and date at job start Tue Mar 31 2020 13:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34725 * 116.99721 * 2 1 4 4 O 1.21482 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.47632 * 119.99923 * 180.02562 * 3 2 1 6 6 C 1.40931 * 126.27041 * 180.23784 * 5 3 2 7 7 C 1.37120 * 105.45654 * 180.12538 * 6 5 3 8 8 C 1.47078 * 126.65280 * 179.91562 * 7 6 5 9 9 O 1.21670 * 119.99867 * 125.14377 * 8 7 6 10 10 N 1.34773 * 120.00050 * 305.14437 * 8 7 6 11 11 C 1.36842 * 119.99877 * 196.57473 * 10 8 7 12 12 H 1.07999 * 120.00418 * 340.51841 * 11 10 8 13 13 C 1.39059 * 119.99988 * 160.51694 * 11 10 8 14 14 N 1.31363 * 119.99611 * 314.33967 * 13 11 10 15 15 Si 1.86801 * 120.00044 * 134.33478 * 13 11 10 16 16 H 1.48506 * 109.46700 * 89.99959 * 15 13 11 17 17 H 1.48496 * 109.47175 * 209.99870 * 15 13 11 18 18 H 1.48497 * 109.46995 * 330.00346 * 15 13 11 19 19 C 1.46507 * 120.00112 * 16.57816 * 10 8 7 20 20 C 1.55243 * 110.46560 * 67.57883 * 19 10 8 21 21 C 1.54891 * 102.58230 * 203.39334 * 20 19 10 22 22 C 1.54273 * 104.31287 * 37.93498 * 21 20 19 23 23 C 1.53875 * 106.59723 * 336.32225 * 22 21 20 24 24 N 1.36798 * 106.69724 * 359.65890 * 7 6 5 25 25 C 1.46493 * 125.06481 * 180.18850 * 24 7 6 26 26 N 1.28463 * 109.87243 * 0.22423 * 24 7 6 27 27 H 1.09000 * 109.46894 * 59.99762 * 1 2 3 28 28 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46871 * 299.99789 * 1 2 3 30 30 H 1.08001 * 127.27538 * 0.02562 * 6 5 3 31 31 H 0.97002 * 119.99897 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.43526 * 190.22749 * 19 10 8 33 33 H 1.09000 * 110.89648 * 85.10400 * 20 19 10 34 34 H 1.08998 * 110.76626 * 321.62162 * 20 19 10 35 35 H 1.08999 * 110.49002 * 279.19067 * 21 20 19 36 36 H 1.09008 * 110.48109 * 156.67614 * 21 20 19 37 37 H 1.08999 * 110.02800 * 95.60756 * 22 21 20 38 38 H 1.09000 * 110.03063 * 216.98519 * 22 21 20 39 39 H 1.08997 * 110.02850 * 119.28755 * 23 22 21 40 40 H 1.09002 * 110.02765 * 240.66714 * 23 22 21 41 41 H 1.08999 * 109.47408 * 93.92537 * 25 24 7 42 42 H 1.09009 * 109.47563 * 213.92172 * 25 24 7 43 43 H 1.09005 * 109.47341 * 333.92099 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5379 1.2778 -0.0006 6 6 4.3110 2.4561 0.0041 7 6 5.6164 2.0367 -0.0014 8 6 6.8133 2.8915 -0.0014 9 8 7.6633 2.7479 0.8572 10 7 6.9684 3.8338 -0.9523 11 6 8.1991 4.3918 -1.1683 12 1 8.9615 4.3298 -0.4059 13 6 8.4681 5.0388 -2.3694 14 7 8.1201 4.4824 -3.5074 15 14 9.3240 6.6992 -2.3647 16 1 10.7940 6.4984 -2.4302 17 1 8.8794 7.4886 -3.5413 18 1 8.9793 7.4302 -1.1190 19 6 5.8194 4.2609 -1.7548 20 6 4.7936 5.0215 -0.8722 21 6 3.4733 4.8472 -1.6631 22 6 3.5468 3.4088 -2.2158 23 6 5.0386 3.0360 -2.2740 24 7 5.5898 0.6689 -0.0012 25 6 6.7723 -0.1958 -0.0022 26 7 4.3735 0.2558 -0.0007 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9512 3.4744 0.0091 31 1 8.3081 4.9335 -4.3453 32 1 6.1468 4.8851 -2.5862 33 1 5.0580 6.0757 -0.7894 34 1 4.7167 4.5628 0.1136 35 1 3.4197 5.5673 -2.4796 36 1 2.6145 4.9581 -1.0009 37 1 3.0169 2.7261 -1.5515 38 1 3.1121 3.3699 -3.2146 39 1 5.2326 2.1723 -1.6380 40 1 5.3284 2.8156 -3.3014 41 1 7.0251 -0.4669 1.0229 42 1 6.5617 -1.0988 -0.5753 43 1 7.6101 0.3347 -0.4549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:04 Heat of formation + Delta-G solvation = 31.662263 kcal Electronic energy + Delta-G solvation = -29399.243931 eV Core-core repulsion = 25449.700795 eV Total energy + Delta-G solvation = -3949.543136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.89520 -40.03085 -39.13366 -37.06071 -36.28268 -34.31951 -33.11105 -31.93439 -30.71671 -28.47876 -28.12266 -27.29996 -26.72961 -25.21087 -23.30083 -22.38607 -21.23623 -19.97170 -19.75548 -19.18930 -17.43250 -17.15497 -17.01258 -16.43215 -16.11605 -15.78200 -15.55984 -15.10114 -14.75562 -14.29133 -13.73934 -13.72597 -13.58696 -13.49057 -13.07308 -12.80536 -12.41592 -12.25436 -12.19893 -12.12413 -11.93843 -11.57322 -11.22419 -10.90312 -10.78612 -10.76874 -10.67568 -10.64691 -10.55729 -10.46368 -10.29050 -9.96827 -9.84835 -9.01947 -8.80195 -8.75053 -8.07192 -7.90679 -6.79645 -3.89796 1.51264 2.07661 2.43714 2.89605 3.04177 3.18142 3.26737 3.35388 3.69143 3.98623 4.46608 4.54495 4.68590 5.05617 5.08572 5.13502 5.16167 5.20373 5.33292 5.37952 5.42997 5.52211 5.56839 5.67345 5.75778 5.96279 5.99995 6.07890 6.17229 6.21225 6.23181 6.35718 6.41127 6.47342 6.56903 6.60742 6.79118 6.90100 6.96905 7.02808 7.31558 7.76593 7.91935 8.19096 8.26868 8.92035 9.17347 9.74621 10.24350 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.004924 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.802604 B = 5685.386979 C = 6569.958819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.560 3.440 4 O -0.499 6.499 5 C -0.027 4.027 6 C -0.173 4.173 7 C 0.024 3.976 8 C 0.492 3.508 9 O -0.576 6.576 10 N -0.400 5.400 11 C -0.346 4.346 12 H 0.110 0.890 13 C 0.063 3.937 14 N -0.807 5.807 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.140 3.860 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.160 4.160 24 N -0.257 5.257 25 C 0.091 3.909 26 N -0.238 5.238 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.195 0.805 31 H 0.274 0.726 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.535 -5.446 1.056 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.403 3.597 4 O -0.385 6.385 5 C -0.181 4.181 6 C -0.200 4.200 7 C -0.103 4.103 8 C 0.279 3.721 9 O -0.461 6.461 10 N -0.115 5.115 11 C -0.472 4.472 12 H 0.127 0.873 13 C -0.149 4.149 14 N -0.439 5.439 15 Si 0.711 3.289 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.188 1.188 19 C 0.035 3.965 20 C -0.194 4.194 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.198 4.198 24 N -0.048 5.048 25 C -0.049 4.049 26 N -0.078 5.078 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.211 0.789 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.205 -6.438 1.232 12.129 hybrid contribution 0.129 1.603 -0.410 1.660 sum -10.075 -4.835 0.822 11.206 Atomic orbital electron populations 1.23279 0.76378 1.03590 1.02573 1.86652 1.23035 1.32319 1.84149 1.19617 0.86357 0.81472 0.72265 1.90841 1.65457 1.35908 1.46310 1.20387 0.90476 0.91367 1.15887 1.23023 0.90091 1.00802 1.06105 1.21583 0.97168 0.84797 1.06738 1.16589 0.84688 0.83124 0.87695 1.90658 1.45005 1.72433 1.38009 1.43404 1.08123 1.30680 1.29279 1.19376 0.91208 1.34853 1.01715 0.87250 1.25165 0.96572 0.99391 0.93722 1.70390 1.41098 1.34290 0.98148 0.86602 0.79877 0.83890 0.78567 1.19901 1.20536 1.18775 1.22072 0.84822 0.95416 0.94212 1.23485 0.95313 1.01196 0.99379 1.22297 0.97156 0.96962 0.99527 1.22426 0.96778 0.97085 1.00590 1.23359 0.94142 1.00035 1.02238 1.45729 1.05043 1.04645 1.49377 1.22234 0.83619 0.94337 1.04715 1.73531 0.89598 1.26335 1.18305 0.91802 0.88149 0.91867 0.78870 0.91553 0.87137 0.91167 0.90214 0.91667 0.91370 0.90384 0.92774 0.89381 0.92059 0.89376 0.88804 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -5.01 10.57 -40.56 -0.43 -5.44 16 3 C 0.56 9.32 7.32 34.57 0.25 9.58 16 4 O -0.50 -8.63 15.74 -19.25 -0.30 -8.94 16 5 C -0.03 -0.49 6.11 -82.94 -0.51 -0.99 16 6 C -0.17 -3.29 5.03 -38.97 -0.20 -3.49 16 7 C 0.02 0.48 4.01 -82.47 -0.33 0.15 16 8 C 0.49 11.76 6.13 -12.68 -0.08 11.69 16 9 O -0.58 -15.30 16.79 5.22 0.09 -15.21 16 10 N -0.40 -9.67 2.66 -107.10 -0.28 -9.95 16 11 C -0.35 -8.99 9.17 -15.01 -0.14 -9.13 16 12 H 0.11 3.01 7.52 -52.49 -0.39 2.62 16 13 C 0.06 1.54 4.22 -17.45 -0.07 1.46 16 14 N -0.81 -19.84 12.29 55.50 0.68 -19.16 16 15 Si 0.89 18.65 29.69 -169.99 -5.05 13.60 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.14 2.97 2.81 -66.08 -0.19 2.79 16 20 C -0.16 -2.84 5.83 -24.55 -0.14 -2.99 16 21 C -0.12 -1.93 6.12 -25.07 -0.15 -2.08 16 22 C -0.13 -2.23 5.87 -25.61 -0.15 -2.38 16 23 C -0.16 -3.15 5.57 -25.62 -0.14 -3.30 16 24 N -0.26 -4.72 3.58 -77.25 -0.28 -5.00 16 25 C 0.09 1.33 11.15 59.84 0.67 2.00 16 26 N -0.24 -4.32 11.97 33.32 0.40 -3.92 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.19 3.58 2.86 -52.49 -0.15 3.43 16 31 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 32 H 0.11 2.53 5.68 -51.93 -0.30 2.23 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.49 4.78 -51.93 -0.25 1.25 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.08 1.36 3.01 -51.93 -0.16 1.20 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.81 2.91 -77.63 -0.23 1.59 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 43 H 0.10 1.66 7.66 -51.93 -0.40 1.26 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -30.02 338.65 -5.41 -35.43 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.23 Total: 8.75 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.11 Total: 4.73 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.52 Total: -38.03 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.64 Total: -29.59 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.05 Total: 13.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.02 -5.41 -35.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.090 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds