Wall clock time and date at job start Tue Mar 31 2020 13:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34725 * 116.99721 * 2 1 4 4 O 1.21482 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.47632 * 119.99923 * 180.02562 * 3 2 1 6 6 C 1.40931 * 126.27041 * 180.23784 * 5 3 2 7 7 C 1.37120 * 105.45654 * 180.12538 * 6 5 3 8 8 C 1.47078 * 126.65280 * 179.91562 * 7 6 5 9 9 O 1.21670 * 119.99867 * 125.14377 * 8 7 6 10 10 N 1.34773 * 120.00050 * 305.14437 * 8 7 6 11 11 C 1.36842 * 119.99877 * 196.57473 * 10 8 7 12 12 H 1.07999 * 120.00418 * 340.51841 * 11 10 8 13 13 C 1.39059 * 119.99988 * 160.51694 * 11 10 8 14 14 N 1.31363 * 119.99611 * 314.33967 * 13 11 10 15 15 Si 1.86801 * 120.00044 * 134.33478 * 13 11 10 16 16 H 1.48506 * 109.46700 * 89.99959 * 15 13 11 17 17 H 1.48496 * 109.47175 * 209.99870 * 15 13 11 18 18 H 1.48497 * 109.46995 * 330.00346 * 15 13 11 19 19 C 1.46507 * 120.00112 * 16.57816 * 10 8 7 20 20 C 1.55243 * 110.46560 * 67.57883 * 19 10 8 21 21 C 1.54891 * 102.58230 * 203.39334 * 20 19 10 22 22 C 1.54273 * 104.31287 * 37.93498 * 21 20 19 23 23 C 1.53875 * 106.59723 * 336.32225 * 22 21 20 24 24 N 1.36798 * 106.69724 * 359.65890 * 7 6 5 25 25 C 1.46493 * 125.06481 * 180.18850 * 24 7 6 26 26 N 1.28463 * 109.87243 * 0.22423 * 24 7 6 27 27 H 1.09000 * 109.46894 * 59.99762 * 1 2 3 28 28 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46871 * 299.99789 * 1 2 3 30 30 H 1.08001 * 127.27538 * 0.02562 * 6 5 3 31 31 H 0.97002 * 119.99897 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.43526 * 190.22749 * 19 10 8 33 33 H 1.09000 * 110.89648 * 85.10400 * 20 19 10 34 34 H 1.08998 * 110.76626 * 321.62162 * 20 19 10 35 35 H 1.08999 * 110.49002 * 279.19067 * 21 20 19 36 36 H 1.09008 * 110.48109 * 156.67614 * 21 20 19 37 37 H 1.08999 * 110.02800 * 95.60756 * 22 21 20 38 38 H 1.09000 * 110.03063 * 216.98519 * 22 21 20 39 39 H 1.08997 * 110.02850 * 119.28755 * 23 22 21 40 40 H 1.09002 * 110.02765 * 240.66714 * 23 22 21 41 41 H 1.08999 * 109.47408 * 93.92537 * 25 24 7 42 42 H 1.09009 * 109.47563 * 213.92172 * 25 24 7 43 43 H 1.09005 * 109.47341 * 333.92099 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5379 1.2778 -0.0006 6 6 4.3110 2.4561 0.0041 7 6 5.6164 2.0367 -0.0014 8 6 6.8133 2.8915 -0.0014 9 8 7.6633 2.7479 0.8572 10 7 6.9684 3.8338 -0.9523 11 6 8.1991 4.3918 -1.1683 12 1 8.9615 4.3298 -0.4059 13 6 8.4681 5.0388 -2.3694 14 7 8.1201 4.4824 -3.5074 15 14 9.3240 6.6992 -2.3647 16 1 10.7940 6.4984 -2.4302 17 1 8.8794 7.4886 -3.5413 18 1 8.9793 7.4302 -1.1190 19 6 5.8194 4.2609 -1.7548 20 6 4.7936 5.0215 -0.8722 21 6 3.4733 4.8472 -1.6631 22 6 3.5468 3.4088 -2.2158 23 6 5.0386 3.0360 -2.2740 24 7 5.5898 0.6689 -0.0012 25 6 6.7723 -0.1958 -0.0022 26 7 4.3735 0.2558 -0.0007 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9512 3.4744 0.0091 31 1 8.3081 4.9335 -4.3453 32 1 6.1468 4.8851 -2.5862 33 1 5.0580 6.0757 -0.7894 34 1 4.7167 4.5628 0.1136 35 1 3.4197 5.5673 -2.4796 36 1 2.6145 4.9581 -1.0009 37 1 3.0169 2.7261 -1.5515 38 1 3.1121 3.3699 -3.2146 39 1 5.2326 2.1723 -1.6380 40 1 5.3284 2.8156 -3.3014 41 1 7.0251 -0.4669 1.0229 42 1 6.5617 -1.0988 -0.5753 43 1 7.6101 0.3347 -0.4549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:03 Heat of formation + Delta-G solvation = 13.153333 kcal Electronic energy + Delta-G solvation = -29400.046539 eV Core-core repulsion = 25449.700795 eV Total energy + Delta-G solvation = -3950.345744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.37954 -41.23906 -40.78245 -38.74128 -37.48416 -36.13363 -34.48339 -33.77288 -32.28129 -29.65656 -29.53420 -28.80839 -27.90419 -27.02188 -24.59956 -24.02591 -22.71234 -21.43628 -21.21709 -20.63915 -19.14794 -18.76366 -18.27858 -17.78267 -17.38804 -17.36751 -16.98065 -16.61835 -16.43033 -15.98447 -15.51683 -15.21897 -14.90730 -14.68904 -14.28309 -14.16193 -14.03813 -13.90148 -13.56038 -13.34428 -13.27015 -12.98963 -12.88679 -12.52794 -12.26728 -12.21833 -12.11088 -11.99219 -11.97096 -11.90412 -11.78165 -11.55946 -11.22807 -10.85010 -10.65716 -10.19588 -9.78063 -9.60425 -8.68071 -5.87003 0.15297 0.52894 1.07096 1.33136 1.44936 1.57364 1.67894 1.94287 2.02596 2.25289 2.72040 2.84356 3.20521 3.56049 3.74421 3.81203 3.96872 4.08202 4.13005 4.24465 4.31700 4.34742 4.40976 4.47913 4.51625 4.53918 4.59763 4.66412 4.68071 4.76023 4.84018 4.98346 5.07348 5.09209 5.17899 5.24187 5.35949 5.36902 5.41038 5.46388 5.50646 5.99280 6.35092 6.51182 6.79656 7.01622 7.29946 7.88085 8.37201 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.004924 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.802604 B = 5685.386979 C = 6569.958819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.564 3.436 4 O -0.508 6.508 5 C -0.033 4.033 6 C -0.163 4.163 7 C 0.000 4.000 8 C 0.487 3.513 9 O -0.617 6.617 10 N -0.407 5.407 11 C -0.388 4.388 12 H 0.080 0.920 13 C 0.044 3.956 14 N -0.825 5.825 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.264 1.264 18 H -0.269 1.269 19 C 0.135 3.865 20 C -0.153 4.153 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.156 4.156 24 N -0.256 5.256 25 C 0.084 3.916 26 N -0.228 5.228 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.200 0.800 31 H 0.284 0.716 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 -5.433 0.381 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.407 3.593 4 O -0.395 6.395 5 C -0.187 4.187 6 C -0.190 4.190 7 C -0.126 4.126 8 C 0.275 3.725 9 O -0.505 6.505 10 N -0.121 5.121 11 C -0.514 4.514 12 H 0.098 0.902 13 C -0.168 4.168 14 N -0.457 5.457 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.188 1.188 18 H -0.194 1.194 19 C 0.030 3.970 20 C -0.190 4.190 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.195 4.195 24 N -0.048 5.048 25 C -0.055 4.055 26 N -0.068 5.068 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.216 0.784 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.441 -6.435 0.524 14.016 hybrid contribution 0.795 1.482 -0.220 1.696 sum -11.646 -4.953 0.304 12.659 Atomic orbital electron populations 1.23693 0.73627 1.06076 1.03179 1.86628 1.25654 1.30916 1.83515 1.19345 0.85646 0.82084 0.72242 1.90830 1.65434 1.36350 1.46848 1.20634 0.91651 0.90783 1.15626 1.23058 0.89536 1.01443 1.04921 1.21118 0.96431 0.85675 1.09415 1.16943 0.85354 0.83145 0.87017 1.90605 1.46871 1.73530 1.39486 1.43536 1.08404 1.30741 1.29411 1.19242 0.92007 1.38186 1.01928 0.90219 1.25810 0.97046 1.01128 0.92820 1.70369 1.41402 1.35210 0.98709 0.85627 0.78828 0.79485 0.78626 1.19684 1.18839 1.19356 1.22188 0.84566 0.96138 0.94060 1.23453 0.95775 1.00964 0.98846 1.22279 0.96127 0.96484 0.99944 1.22387 0.94488 0.97772 1.01656 1.23309 0.95967 0.99347 1.00828 1.46031 1.05887 1.04164 1.48673 1.22493 0.82067 0.94673 1.06277 1.73527 0.89418 1.26185 1.17665 0.91213 0.84813 0.91281 0.78409 0.90599 0.88942 0.90563 0.90868 0.89957 0.89527 0.90450 0.91169 0.90008 0.93673 0.87730 0.85377 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.29 10.57 -56.35 -0.60 -9.88 16 3 C 0.56 17.59 7.32 70.30 0.51 18.11 16 4 O -0.51 -16.35 15.74 19.89 0.31 -16.04 16 5 C -0.03 -1.14 6.11 42.26 0.26 -0.88 16 6 C -0.16 -6.11 5.03 22.67 0.11 -5.99 16 7 C 0.00 -0.01 4.01 40.43 0.16 0.16 16 8 C 0.49 24.34 6.13 86.56 0.53 24.87 16 9 O -0.62 -34.61 16.79 -4.25 -0.07 -34.68 16 10 N -0.41 -20.45 2.66 -610.98 -1.62 -22.07 16 11 C -0.39 -21.09 9.17 84.11 0.77 -20.32 16 12 H 0.08 4.70 7.52 -2.91 -0.02 4.68 16 13 C 0.04 2.15 4.22 84.96 0.36 2.51 16 14 N -0.83 -40.96 12.29 21.68 0.27 -40.69 16 15 Si 0.95 38.60 29.69 68.60 2.04 40.64 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 C 0.13 5.80 2.81 46.19 0.13 5.93 16 20 C -0.15 -5.47 5.83 32.01 0.19 -5.29 16 21 C -0.11 -3.25 6.12 31.67 0.19 -3.05 16 22 C -0.13 -4.05 5.87 31.32 0.18 -3.86 16 23 C -0.16 -6.18 5.57 31.32 0.17 -6.01 16 24 N -0.26 -9.37 3.58 -398.31 -1.43 -10.79 16 25 C 0.08 2.45 11.15 127.77 1.42 3.87 16 26 N -0.23 -8.00 11.97 -48.50 -0.58 -8.58 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.20 7.16 2.86 -2.91 -0.01 7.16 16 31 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 32 H 0.09 4.28 5.68 -2.39 -0.01 4.27 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.74 4.78 -2.39 -0.01 2.72 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.08 2.54 3.01 -2.39 -0.01 2.53 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 3.39 2.91 -26.53 -0.08 3.32 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 43 H 0.08 2.79 7.66 -2.38 -0.02 2.77 16 Total: -1.00 -66.49 338.65 5.52 -60.97 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 1.00 Total: 29.44 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.20 Total: 11.68 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -3.36 Total: -82.14 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.35 Total: -60.60 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.04 Total: 40.64 kcal Total: -66.49 5.52 -60.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.127 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds