Wall clock time and date at job start Tue Mar 31 2020 13:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00161 * 2 1 4 4 C 1.38820 * 120.01723 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.09414 * 179.97438 * 4 3 2 6 6 C 1.38162 * 120.12795 * 359.97438 * 5 4 3 7 7 C 1.38932 * 120.03277 * 0.27978 * 6 5 4 8 8 N 1.39666 * 120.04251 * 179.72423 * 7 6 5 9 9 C 1.46952 * 111.00236 * 63.79645 * 8 7 6 10 10 C 1.53051 * 109.36391 * 176.81413 * 9 8 7 11 11 N 1.46956 * 109.36853 * 58.39490 * 10 9 8 12 12 C 1.46903 * 110.99946 * 176.81006 * 11 10 9 13 13 C 1.50697 * 109.46598 * 58.98415 * 12 11 10 14 14 H 1.07998 * 120.00587 * 5.00609 * 13 12 11 15 15 C 1.37879 * 119.99692 * 185.00376 * 13 12 11 16 16 N 1.31516 * 120.00170 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46728 * 60.00264 * 17 15 13 19 19 H 1.48497 * 109.47342 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47383 * 300.00520 * 17 15 13 21 21 C 1.46952 * 110.88375 * 300.68349 * 11 10 9 22 22 C 1.46955 * 110.99678 * 299.99280 * 8 7 6 23 23 C 1.38574 * 120.02196 * 180.02562 * 3 2 1 24 24 N 1.48017 * 120.06000 * 359.97438 * 23 3 2 25 25 O 1.21796 * 120.00359 * 89.99772 * 24 23 3 26 26 O 1.21801 * 120.00045 * 269.99571 * 24 23 3 27 27 H 1.08999 * 109.47094 * 59.99294 * 1 2 3 28 28 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47076 * 299.99982 * 1 2 3 30 30 H 1.07998 * 119.95254 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.93689 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.98365 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.48823 * 296.77236 * 9 8 7 34 34 H 1.08997 * 109.49168 * 56.84266 * 9 8 7 35 35 H 1.09001 * 109.48565 * 298.42757 * 10 9 8 36 36 H 1.09005 * 109.50954 * 178.38231 * 10 9 8 37 37 H 1.09000 * 109.46644 * 178.98068 * 12 11 10 38 38 H 1.08994 * 109.47379 * 298.98061 * 12 11 10 39 39 H 0.96997 * 120.00709 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.48823 * 299.35554 * 21 11 10 41 41 H 1.08997 * 109.49168 * 179.28525 * 21 11 10 42 42 H 1.08997 * 109.49419 * 303.15719 * 22 8 7 43 43 H 1.09004 * 109.48958 * 63.20793 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9160 3.6073 0.0011 6 6 3.2954 3.6845 0.0016 7 6 4.0569 2.5224 -0.0043 8 7 5.4514 2.6002 -0.0095 9 6 5.9483 3.2314 1.2210 10 6 7.4788 3.2257 1.2119 11 7 7.9618 3.9427 0.0235 12 6 9.4285 4.0245 0.0179 13 6 10.0092 2.6341 0.0376 14 1 9.3573 1.7756 -0.0289 15 6 11.3728 2.4579 0.1405 16 7 12.1666 3.5032 0.2220 17 14 12.0926 0.7344 0.1657 18 1 11.7337 0.0297 -1.0913 19 1 13.5707 0.8169 0.2827 20 1 11.5457 -0.0137 1.3260 21 6 7.4648 3.3116 -1.2071 22 6 5.9343 3.3173 -1.1979 23 6 3.4298 1.2838 -0.0005 24 7 4.2377 0.0436 -0.0005 25 8 4.5697 -0.4670 -1.0553 26 8 4.5706 -0.4664 1.0543 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2118 2.3182 0.0014 31 1 1.3256 4.5116 0.0019 32 1 3.7821 4.6486 0.0016 33 1 5.5889 4.2591 1.2733 34 1 5.5877 2.6751 2.0862 35 1 7.8384 2.1970 1.1871 36 1 7.8500 3.7190 2.1102 37 1 9.7599 4.5440 -0.8812 38 1 9.7652 4.5715 0.8985 39 1 13.1259 3.3794 0.2948 40 1 7.8242 2.2839 -1.2594 41 1 7.8254 3.8678 -2.0723 42 1 5.5635 2.8237 -2.0962 43 1 5.5744 4.3459 -1.1732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:28 Heat of formation + Delta-G solvation = 13.227130 kcal Electronic energy + Delta-G solvation = -27949.016609 eV Core-core repulsion = 23998.674065 eV Total energy + Delta-G solvation = -3950.342544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.03762 -40.62812 -39.55672 -37.58843 -36.12204 -35.13171 -32.54194 -32.04189 -30.55475 -30.10607 -28.11268 -27.54135 -26.11078 -24.93198 -23.15067 -22.92096 -22.26048 -21.44172 -19.43810 -19.30514 -18.44229 -18.16976 -17.58786 -16.56358 -16.41195 -16.20033 -15.98454 -15.55812 -14.96264 -14.88016 -14.58926 -14.33173 -14.02270 -13.46514 -13.21170 -13.08665 -12.91315 -12.53068 -12.13619 -12.08417 -11.83558 -11.76779 -11.32183 -11.11654 -10.90504 -10.88988 -10.84459 -10.75619 -10.65850 -10.47426 -10.18176 -9.86787 -9.63737 -9.58650 -8.94314 -8.68974 -8.40518 -7.25937 -6.01128 -4.10025 0.36863 0.62542 0.88159 1.58250 2.41221 2.88374 3.35957 3.39056 3.44806 3.59246 4.13703 4.27836 4.45731 4.49165 4.58852 4.59119 4.62387 4.74989 4.93063 4.95648 5.20179 5.29332 5.34314 5.35818 5.50933 5.56112 5.70670 5.73078 5.75136 5.81278 5.99011 6.12117 6.39502 6.48106 6.65639 6.68657 6.78089 6.87401 7.05591 7.22488 7.51279 7.89615 7.90661 7.98751 8.19015 8.28605 8.99735 9.57712 11.04219 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003573 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.505251 B = 7835.498183 C = 8794.282080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.177 3.823 4 C -0.209 4.209 5 C -0.035 4.035 6 C -0.176 4.176 7 C 0.188 3.812 8 N -0.519 5.519 9 C 0.065 3.935 10 C 0.065 3.935 11 N -0.543 5.543 12 C 0.189 3.811 13 C -0.552 4.552 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.063 3.937 22 C 0.066 3.934 23 C -0.044 4.044 24 N 0.044 4.956 25 O -0.139 6.139 26 O -0.140 6.140 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.582 0.685 -0.403 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.129 3.871 4 C -0.229 4.229 5 C -0.054 4.054 6 C -0.197 4.197 7 C 0.092 3.908 8 N -0.242 5.242 9 C -0.060 4.060 10 C -0.064 4.064 11 N -0.268 5.268 12 C 0.063 3.937 13 C -0.591 4.591 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.066 4.066 22 C -0.060 4.060 23 C -0.127 4.127 24 N 0.576 4.424 25 O -0.363 6.363 26 O -0.364 6.364 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.688 1.215 -0.382 26.719 hybrid contribution 0.483 -1.194 0.007 1.288 sum -26.205 0.021 -0.375 26.208 Atomic orbital electron populations 1.23230 0.76561 1.05034 1.01928 1.86168 1.23042 1.25500 1.87714 1.18309 0.88683 0.86202 0.93870 1.21206 1.00611 0.90963 1.10077 1.21132 0.94267 0.97528 0.92443 1.21714 0.94277 0.98637 1.05072 1.18323 0.91057 0.89173 0.92198 1.59863 1.02913 1.55797 1.05599 1.22416 0.97678 0.96688 0.89244 1.21934 0.90209 0.99365 0.94911 1.62750 1.14288 1.49230 1.00499 1.19727 0.79819 0.96126 0.97993 1.21722 0.92356 0.93474 1.51507 0.92294 1.24944 0.97174 0.96790 0.94718 1.69931 1.04092 1.29294 1.49794 0.86692 0.77801 0.84892 0.78937 1.20106 1.21272 1.20076 1.21951 0.90458 0.99765 0.94443 1.22398 0.97661 0.95732 0.90219 1.20166 0.87941 0.85258 1.19346 1.42900 0.98616 1.00619 1.00249 1.94532 1.56974 1.63856 1.20916 1.94535 1.56987 1.63928 1.20905 0.91843 0.87336 0.91836 0.83446 0.83951 0.83583 0.93473 0.90657 0.92704 0.90521 0.95380 0.94643 0.92763 0.92954 0.90593 0.90684 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.54 10.25 -19.41 -0.20 -3.74 16 3 C 0.18 2.08 6.68 -39.24 -0.26 1.82 16 4 C -0.21 -1.66 9.04 -39.39 -0.36 -2.01 16 5 C -0.03 -0.26 10.03 -39.63 -0.40 -0.66 16 6 C -0.18 -1.80 8.64 -39.35 -0.34 -2.14 16 7 C 0.19 2.61 4.72 -83.81 -0.40 2.22 16 8 N -0.52 -8.41 4.40 -170.98 -0.75 -9.16 16 9 C 0.07 1.04 5.35 -3.77 -0.02 1.02 16 10 C 0.06 1.27 5.24 -3.77 -0.02 1.25 16 11 N -0.54 -11.46 4.92 -235.91 -1.16 -12.62 16 12 C 0.19 4.82 5.14 -4.98 -0.03 4.79 16 13 C -0.55 -15.33 7.66 -34.44 -0.26 -15.59 16 14 H 0.06 1.67 5.82 -52.49 -0.31 1.36 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.06 1.22 5.32 -3.76 -0.02 1.20 16 22 C 0.07 1.03 5.31 -3.76 -0.02 1.01 16 23 C -0.04 -0.66 6.19 -79.60 -0.49 -1.15 16 24 N 0.04 0.80 3.79 34.13 0.13 0.93 16 25 O -0.14 -2.67 19.25 -29.46 -0.57 -3.24 16 26 O -0.14 -2.70 19.25 -29.46 -0.57 -3.26 16 27 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.15 0.66 6.29 -52.49 -0.33 0.33 16 31 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.15 1.34 7.05 -52.49 -0.37 0.97 16 33 H 0.05 0.68 7.44 -51.93 -0.39 0.29 16 34 H 0.08 1.16 8.13 -51.93 -0.42 0.73 16 35 H 0.05 1.25 6.62 -51.93 -0.34 0.90 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 41 H 0.08 1.43 8.12 -51.93 -0.42 1.00 16 42 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 43 H 0.05 0.67 7.23 -51.93 -0.38 0.29 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -33.27 356.44 -9.52 -42.79 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.77 Total: -3.17 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.72 Total: -5.31 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.05 Total: -46.51 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.33 Total: -10.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.27 -9.52 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.016 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds