Wall clock time and date at job start Tue Mar 31 2020 13:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00161 * 2 1 4 4 C 1.38820 * 120.01723 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.09414 * 179.97438 * 4 3 2 6 6 C 1.38162 * 120.12795 * 359.97438 * 5 4 3 7 7 C 1.38932 * 120.03277 * 0.27978 * 6 5 4 8 8 N 1.39666 * 120.04251 * 179.72423 * 7 6 5 9 9 C 1.46952 * 111.00236 * 63.79645 * 8 7 6 10 10 C 1.53051 * 109.36391 * 176.81413 * 9 8 7 11 11 N 1.46956 * 109.36853 * 58.39490 * 10 9 8 12 12 C 1.46903 * 110.99946 * 176.81006 * 11 10 9 13 13 C 1.50697 * 109.46598 * 58.98415 * 12 11 10 14 14 H 1.07998 * 120.00587 * 5.00609 * 13 12 11 15 15 C 1.37879 * 119.99692 * 185.00376 * 13 12 11 16 16 N 1.31516 * 120.00170 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46728 * 60.00264 * 17 15 13 19 19 H 1.48497 * 109.47342 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47383 * 300.00520 * 17 15 13 21 21 C 1.46952 * 110.88375 * 300.68349 * 11 10 9 22 22 C 1.46955 * 110.99678 * 299.99280 * 8 7 6 23 23 C 1.38574 * 120.02196 * 180.02562 * 3 2 1 24 24 N 1.48017 * 120.06000 * 359.97438 * 23 3 2 25 25 O 1.21796 * 120.00359 * 89.99772 * 24 23 3 26 26 O 1.21801 * 120.00045 * 269.99571 * 24 23 3 27 27 H 1.08999 * 109.47094 * 59.99294 * 1 2 3 28 28 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47076 * 299.99982 * 1 2 3 30 30 H 1.07998 * 119.95254 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.93689 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.98365 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.48823 * 296.77236 * 9 8 7 34 34 H 1.08997 * 109.49168 * 56.84266 * 9 8 7 35 35 H 1.09001 * 109.48565 * 298.42757 * 10 9 8 36 36 H 1.09005 * 109.50954 * 178.38231 * 10 9 8 37 37 H 1.09000 * 109.46644 * 178.98068 * 12 11 10 38 38 H 1.08994 * 109.47379 * 298.98061 * 12 11 10 39 39 H 0.96997 * 120.00709 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.48823 * 299.35554 * 21 11 10 41 41 H 1.08997 * 109.49168 * 179.28525 * 21 11 10 42 42 H 1.08997 * 109.49419 * 303.15719 * 22 8 7 43 43 H 1.09004 * 109.48958 * 63.20793 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9160 3.6073 0.0011 6 6 3.2954 3.6845 0.0016 7 6 4.0569 2.5224 -0.0043 8 7 5.4514 2.6002 -0.0095 9 6 5.9483 3.2314 1.2210 10 6 7.4788 3.2257 1.2119 11 7 7.9618 3.9427 0.0235 12 6 9.4285 4.0245 0.0179 13 6 10.0092 2.6341 0.0376 14 1 9.3573 1.7756 -0.0289 15 6 11.3728 2.4579 0.1405 16 7 12.1666 3.5032 0.2220 17 14 12.0926 0.7344 0.1657 18 1 11.7337 0.0297 -1.0913 19 1 13.5707 0.8169 0.2827 20 1 11.5457 -0.0137 1.3260 21 6 7.4648 3.3116 -1.2071 22 6 5.9343 3.3173 -1.1979 23 6 3.4298 1.2838 -0.0005 24 7 4.2377 0.0436 -0.0005 25 8 4.5697 -0.4670 -1.0553 26 8 4.5706 -0.4664 1.0543 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2118 2.3182 0.0014 31 1 1.3256 4.5116 0.0019 32 1 3.7821 4.6486 0.0016 33 1 5.5889 4.2591 1.2733 34 1 5.5877 2.6751 2.0862 35 1 7.8384 2.1970 1.1871 36 1 7.8500 3.7190 2.1102 37 1 9.7599 4.5440 -0.8812 38 1 9.7652 4.5715 0.8985 39 1 13.1259 3.3794 0.2948 40 1 7.8242 2.2839 -1.2594 41 1 7.8254 3.8678 -2.0723 42 1 5.5635 2.8237 -2.0962 43 1 5.5744 4.3459 -1.1732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:27 Heat of formation + Delta-G solvation = -10.315928 kcal Electronic energy + Delta-G solvation = -27950.037512 eV Core-core repulsion = 23998.674065 eV Total energy + Delta-G solvation = -3951.363447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.23913 -41.61890 -40.62459 -38.74205 -37.51935 -36.52453 -34.52887 -33.02530 -32.00024 -31.21298 -29.17561 -28.59571 -27.45334 -26.52313 -24.61400 -24.13368 -23.49886 -22.75859 -20.83673 -20.45652 -19.80667 -19.13068 -18.66147 -18.43163 -17.46008 -17.05488 -17.03220 -16.71205 -16.25459 -16.23316 -15.93739 -15.79268 -15.31592 -15.02435 -14.41587 -14.05902 -13.94975 -13.68063 -13.62762 -13.17499 -13.03962 -12.87466 -12.76542 -12.71591 -12.63673 -12.33447 -12.30937 -12.23548 -12.18427 -12.10853 -11.90863 -11.85373 -11.52930 -10.63938 -10.49103 -9.84947 -9.69223 -9.15191 -8.20687 -6.38470 -0.55282 -0.45513 -0.13116 0.45965 1.34006 1.34772 1.43737 1.72735 2.15613 2.34529 2.55550 3.04992 3.23585 3.51947 3.56512 3.70532 3.77603 3.98936 4.04001 4.04972 4.16260 4.22382 4.30010 4.32426 4.34337 4.53769 4.63947 4.66994 4.71169 4.82920 4.96940 5.00096 5.05152 5.10246 5.17668 5.18749 5.20924 5.28611 5.63771 5.69338 5.89008 5.94158 6.00575 6.17799 6.37933 6.43911 6.80518 7.32719 8.82129 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.003573 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.505251 B = 7835.498183 C = 8794.282080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.345 6.345 3 C 0.169 3.831 4 C -0.188 4.188 5 C -0.012 4.012 6 C -0.170 4.170 7 C 0.163 3.837 8 N -0.544 5.544 9 C 0.080 3.920 10 C 0.067 3.933 11 N -0.531 5.531 12 C 0.202 3.798 13 C -0.560 4.560 14 H 0.046 0.954 15 C 0.019 3.981 16 N -0.921 5.921 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.064 3.936 22 C 0.080 3.920 23 C -0.080 4.080 24 N 0.048 4.952 25 O -0.170 6.170 26 O -0.172 6.172 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.191 0.809 31 H 0.193 0.807 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.010 0.990 38 H 0.014 0.986 39 H 0.267 0.733 40 H 0.012 0.988 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.548 2.328 -0.453 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.258 6.258 3 C 0.121 3.879 4 C -0.207 4.207 5 C -0.030 4.030 6 C -0.190 4.190 7 C 0.067 3.933 8 N -0.268 5.268 9 C -0.045 4.045 10 C -0.062 4.062 11 N -0.255 5.255 12 C 0.076 3.924 13 C -0.598 4.598 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.561 5.561 17 Si 0.775 3.225 18 H -0.199 1.199 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.065 4.065 22 C -0.046 4.046 23 C -0.162 4.162 24 N 0.575 4.425 25 O -0.392 6.392 26 O -0.393 6.393 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.208 0.792 31 H 0.210 0.790 32 H 0.180 0.820 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.094 0.906 37 H 0.028 0.972 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -30.677 2.839 -0.434 30.811 hybrid contribution 1.530 -1.679 0.019 2.272 sum -29.147 1.161 -0.415 29.173 Atomic orbital electron populations 1.23629 0.73711 1.06547 1.03970 1.86146 1.26064 1.25990 1.87626 1.18607 0.87618 0.87779 0.93934 1.21756 1.02397 0.89464 1.07074 1.21697 0.93234 0.99108 0.88943 1.21923 0.95489 0.97467 1.04168 1.18352 0.89706 0.90000 0.95212 1.59577 1.05442 1.56449 1.05305 1.22204 0.94175 0.98345 0.89798 1.21911 0.93479 0.96580 0.94231 1.62692 1.11391 1.49603 1.01838 1.19392 0.82714 0.94461 0.95881 1.21904 0.92589 0.94126 1.51222 0.93594 1.25686 0.97588 1.00410 0.94435 1.70020 1.04462 1.31069 1.50516 0.85745 0.77570 0.80457 0.78770 1.19941 1.19929 1.20013 1.21959 0.93680 0.97140 0.93697 1.22214 0.94186 0.97424 0.90742 1.20548 0.88982 0.83273 1.23384 1.43486 0.98098 1.01560 0.99375 1.94490 1.58131 1.65371 1.21195 1.94494 1.58161 1.65448 1.21188 0.89672 0.86435 0.89673 0.79153 0.79003 0.81972 0.90763 0.90266 0.96763 0.90602 0.97224 0.96834 0.92422 0.96930 0.90252 0.90010 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -7.30 10.25 -92.35 -0.95 -8.24 16 3 C 0.17 3.55 6.68 22.49 0.15 3.70 16 4 C -0.19 -1.95 9.04 22.39 0.20 -1.75 16 5 C -0.01 -0.10 10.03 22.24 0.22 0.12 16 6 C -0.17 -2.70 8.64 22.42 0.19 -2.51 16 7 C 0.16 4.24 4.72 38.20 0.18 4.42 16 8 N -0.54 -17.49 4.40 -694.85 -3.05 -20.54 16 9 C 0.08 2.52 5.35 86.31 0.46 2.98 16 10 C 0.07 2.73 5.24 86.31 0.45 3.18 16 11 N -0.53 -23.07 4.92 -900.28 -4.43 -27.50 16 12 C 0.20 10.80 5.14 85.56 0.44 11.24 16 13 C -0.56 -32.53 7.66 25.60 0.20 -32.34 16 14 H 0.05 2.76 5.82 -2.91 -0.02 2.74 16 15 C 0.02 1.10 5.46 84.65 0.46 1.56 16 16 N -0.92 -55.75 13.29 21.45 0.28 -55.46 16 17 Si 0.95 46.57 29.54 68.60 2.03 48.60 16 18 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 21 C 0.06 2.57 5.32 86.31 0.46 3.03 16 22 C 0.08 2.45 5.31 86.31 0.46 2.91 16 23 C -0.08 -2.33 6.19 36.60 0.23 -2.10 16 24 N 0.05 1.82 3.79 -45.93 -0.17 1.64 16 25 O -0.17 -6.98 19.25 18.89 0.36 -6.62 16 26 O -0.17 -7.05 19.25 18.88 0.36 -6.69 16 27 H 0.08 0.29 7.66 -2.39 -0.02 0.27 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.29 7.66 -2.39 -0.02 0.27 16 30 H 0.19 0.33 6.29 -2.91 -0.02 0.31 16 31 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 32 H 0.16 2.08 7.05 -2.91 -0.02 2.06 16 33 H 0.07 1.93 7.44 -2.39 -0.02 1.91 16 34 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16 35 H 0.01 0.69 6.62 -2.39 -0.02 0.67 16 36 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 37 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 38 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.01 0.59 6.78 -2.39 -0.02 0.58 16 41 H 0.08 3.06 8.12 -2.39 -0.02 3.04 16 42 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 43 H 0.08 1.89 7.23 -2.39 -0.02 1.88 16 Total: -1.00 -79.45 356.44 0.69 -78.77 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 1.03 Total: 0.37 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.22 Total: -4.33 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -7.37 Total: -101.86 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.22 Total: -21.55 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.45 0.69 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.451 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds