Wall clock time and date at job start Tue Mar 31 2020 13:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35899 * 117.00072 * 2 1 4 4 C 1.38816 * 120.01634 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.09206 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12523 * 359.97438 * 5 4 3 7 7 N 1.48013 * 119.97803 * 179.97438 * 6 5 4 8 8 O 1.21796 * 119.99807 * 0.02562 * 7 6 5 9 9 O 1.21797 * 120.00008 * 180.02562 * 7 6 5 10 10 C 1.38926 * 120.03843 * 359.97438 * 6 5 4 11 11 N 1.39668 * 120.04829 * 179.97438 * 10 6 5 12 12 C 1.46950 * 111.00327 * 243.80346 * 11 10 6 13 13 C 1.53053 * 109.36707 * 176.81163 * 12 11 10 14 14 N 1.46950 * 109.36273 * 58.39878 * 13 12 11 15 15 C 1.46903 * 110.99784 * 176.81275 * 14 13 12 16 16 C 1.50695 * 109.47083 * 58.99571 * 15 14 13 17 17 H 1.08005 * 120.00280 * 4.98507 * 16 15 14 18 18 C 1.37877 * 120.00219 * 184.99143 * 16 15 14 19 19 N 1.31515 * 120.00451 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47046 * 90.00262 * 20 18 16 22 22 H 1.48501 * 109.47343 * 210.00446 * 20 18 16 23 23 H 1.48501 * 109.47392 * 330.00928 * 20 18 16 24 24 C 1.46950 * 110.88195 * 300.68251 * 14 13 12 25 25 C 1.46960 * 110.99770 * 120.00187 * 11 10 6 26 26 C 1.38570 * 120.01649 * 180.25262 * 3 2 1 27 27 H 1.09004 * 109.47617 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46924 * 299.99714 * 1 2 3 29 29 H 1.08999 * 109.47640 * 59.99680 * 1 2 3 30 30 H 1.08001 * 119.95274 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.93532 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.49210 * 296.78003 * 12 11 10 33 33 H 1.09003 * 109.48899 * 56.84121 * 12 11 10 34 34 H 1.08997 * 109.48487 * 298.43253 * 13 12 11 35 35 H 1.09001 * 109.50844 * 178.37881 * 13 12 11 36 36 H 1.09003 * 109.47171 * 178.99327 * 15 14 13 37 37 H 1.09001 * 109.47537 * 298.99104 * 15 14 13 38 38 H 0.97003 * 120.00238 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.49210 * 299.35167 * 24 14 13 40 40 H 1.09003 * 109.48899 * 179.29049 * 24 14 13 41 41 H 1.08993 * 109.48736 * 303.15654 * 25 11 10 42 42 H 1.08998 * 109.48681 * 63.20597 * 25 11 10 43 43 H 1.08002 * 120.07079 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9159 3.6073 0.0000 6 6 3.2954 3.6844 -0.0005 7 7 3.9622 5.0058 -0.0017 8 8 3.2949 6.0247 -0.0017 9 8 5.1783 5.0743 -0.0026 10 6 4.0569 2.5224 0.0000 11 7 5.4514 2.6002 -0.0011 12 6 6.0101 2.0236 -1.2319 13 6 7.5305 2.1995 -1.2301 14 7 8.0952 1.5450 -0.0418 15 6 9.5620 1.6268 -0.0429 16 6 9.9844 3.0731 -0.0694 17 1 9.2413 3.8541 -0.0027 18 6 11.3195 3.3995 -0.1790 19 7 11.6882 4.6617 -0.2016 20 14 12.6048 2.0488 -0.2939 21 1 12.8290 1.6989 -1.7195 22 1 13.8776 2.5245 0.3052 23 1 12.1295 0.8493 0.4413 24 6 7.5365 2.1215 1.1890 25 6 6.0162 1.9456 1.1873 26 6 3.4297 1.2838 -0.0053 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2117 2.3182 0.0005 31 1 1.3255 4.5115 0.0000 32 1 5.7669 0.9622 -1.2793 33 1 5.5860 2.5331 -2.0972 34 1 7.7735 3.2619 -1.2103 35 1 7.9503 1.7471 -2.1286 36 1 9.9532 1.1505 0.8561 37 1 9.9537 1.1177 -0.9235 38 1 12.6275 4.8913 -0.2791 39 1 7.7797 3.1830 1.2364 40 1 7.9606 1.6120 2.0543 41 1 5.5967 2.3983 2.0857 42 1 5.7728 0.8833 1.1675 43 1 4.0193 0.3789 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:25 Heat of formation + Delta-G solvation = 23.570851 kcal Electronic energy + Delta-G solvation = -27830.836085 eV Core-core repulsion = 23880.942079 eV Total energy + Delta-G solvation = -3949.894006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90753 -40.75277 -39.38970 -37.58535 -36.10335 -35.12730 -32.37371 -31.62215 -30.64105 -30.50684 -28.46274 -27.52874 -25.77138 -25.05520 -23.12801 -23.09272 -21.88040 -21.21340 -19.17886 -19.09815 -18.49424 -18.26853 -17.10267 -16.86900 -16.56963 -16.36917 -16.20784 -14.87489 -14.84493 -14.74700 -14.47027 -14.32887 -14.13132 -13.82305 -13.24616 -13.16991 -12.98417 -12.52801 -12.29616 -12.11440 -11.80622 -11.70281 -11.30754 -11.11089 -10.97361 -10.87998 -10.75977 -10.63099 -10.58417 -10.28858 -10.17588 -9.92152 -9.46018 -9.42851 -9.08207 -8.53513 -8.46830 -7.21692 -6.02942 -4.03253 -0.03260 0.56393 1.50282 1.71452 2.55611 2.97418 3.30954 3.38974 3.41900 3.53354 4.05258 4.26718 4.44373 4.46041 4.57330 4.62479 4.64843 4.88652 4.90295 5.00802 5.19922 5.28316 5.31265 5.38354 5.47150 5.52930 5.60275 5.68837 5.78867 5.81467 6.01342 6.16432 6.48028 6.59224 6.69738 6.76021 6.86912 6.92231 7.04914 7.08226 7.15276 7.59120 8.04069 8.05816 8.07742 8.51261 9.03123 9.58876 11.09762 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.003480 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.102330 B = 8043.967576 C = 9178.789057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.306 6.306 3 C 0.185 3.815 4 C -0.219 4.219 5 C -0.012 4.012 6 C -0.067 4.067 7 N 0.029 4.971 8 O -0.213 6.213 9 O -0.084 6.084 10 C 0.209 3.791 11 N -0.493 5.493 12 C 0.068 3.932 13 C 0.063 3.937 14 N -0.537 5.537 15 C 0.156 3.844 16 C -0.552 4.552 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.062 3.938 25 C 0.067 3.933 26 C -0.188 4.188 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.848 -9.608 0.415 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.218 6.218 3 C 0.137 3.863 4 C -0.239 4.239 5 C -0.031 4.031 6 C -0.153 4.153 7 N 0.551 4.449 8 O -0.413 6.413 9 O -0.317 6.317 10 C 0.112 3.888 11 N -0.216 5.216 12 C -0.058 4.058 13 C -0.066 4.066 14 N -0.261 5.261 15 C 0.029 3.971 16 C -0.591 4.591 17 H 0.100 0.900 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.066 4.066 25 C -0.059 4.059 26 C -0.210 4.210 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.031 -10.268 0.405 27.058 hybrid contribution 0.652 -0.081 -0.082 0.662 sum -24.379 -10.349 0.323 26.487 Atomic orbital electron populations 1.23226 0.77396 1.04783 1.01912 1.86158 1.22245 1.26218 1.87159 1.19182 0.92031 0.84607 0.90445 1.21189 1.00958 0.90776 1.10929 1.20737 0.91479 0.99416 0.91480 1.21077 0.92501 0.83272 1.18402 1.43305 1.01542 1.01853 0.98250 1.94484 1.65522 1.24515 1.56771 1.94726 0.94375 1.93525 1.49101 1.18473 0.91327 0.89268 0.89724 1.60106 0.98819 1.57785 1.04858 1.22351 0.97108 0.96771 0.89523 1.21959 0.89919 1.00508 0.94174 1.62659 1.08605 1.53704 1.01159 1.20139 0.83316 0.96787 0.96810 1.21737 0.93849 0.92063 1.51429 0.90041 1.24969 0.98538 0.95110 0.94358 1.69941 1.16736 1.16652 1.50042 0.86840 0.81308 0.82821 0.78620 1.20303 1.21408 1.19003 1.21958 0.90239 1.00728 0.93710 1.22349 0.96939 0.96071 0.90510 1.21113 0.92072 0.98956 1.08827 0.87556 0.92012 0.92003 0.83414 0.82645 0.93893 0.90995 0.91496 0.90869 0.95499 0.95688 0.92741 0.91842 0.90893 0.90975 0.93841 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.49 10.49 -19.42 -0.20 -2.69 16 3 C 0.19 1.71 6.68 -39.24 -0.26 1.45 16 4 C -0.22 -1.73 9.04 -39.39 -0.36 -2.08 16 5 C -0.01 -0.12 9.54 -39.63 -0.38 -0.50 16 6 C -0.07 -0.93 6.87 -79.72 -0.55 -1.47 16 7 N 0.03 0.50 4.45 34.07 0.15 0.66 16 8 O -0.21 -3.66 18.44 -29.46 -0.54 -4.21 16 9 O -0.08 -1.66 17.09 -29.46 -0.50 -2.16 16 10 C 0.21 2.81 4.71 -83.81 -0.39 2.42 16 11 N -0.49 -7.74 2.55 -170.98 -0.44 -8.18 16 12 C 0.07 1.06 5.35 -3.77 -0.02 1.04 16 13 C 0.06 1.21 5.24 -3.77 -0.02 1.19 16 14 N -0.54 -10.85 4.92 -235.92 -1.16 -12.01 16 15 C 0.16 3.68 4.21 -4.98 -0.02 3.66 16 16 C -0.55 -15.29 8.21 -34.44 -0.28 -15.57 16 17 H 0.08 2.49 6.07 -52.48 -0.32 2.17 16 18 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 20 Si 0.88 21.37 27.37 -169.99 -4.65 16.72 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.20 6.69 56.52 0.38 -5.82 16 24 C 0.06 1.18 5.32 -3.77 -0.02 1.16 16 25 C 0.07 1.03 5.32 -3.77 -0.02 1.01 16 26 C -0.19 -2.09 8.57 -39.24 -0.34 -2.43 16 27 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 30 H 0.15 0.67 6.29 -52.49 -0.33 0.34 16 31 H 0.16 1.32 7.60 -52.49 -0.40 0.92 16 32 H 0.04 0.61 7.42 -51.93 -0.39 0.22 16 33 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 34 H 0.07 1.52 6.62 -51.93 -0.34 1.17 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 37 H 0.03 0.59 7.30 -51.93 -0.38 0.21 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 39 H 0.06 1.41 6.78 -51.93 -0.35 1.06 16 40 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 41 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 42 H 0.04 0.61 7.25 -51.93 -0.38 0.23 16 43 H 0.15 1.64 7.06 -52.49 -0.37 1.26 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -32.82 348.71 -8.79 -41.61 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.71 Total: -1.17 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.76 Total: -7.06 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.67 Total: -46.29 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.25 Total: -9.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.65 Total: 16.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.82 -8.79 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.182 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds