Wall clock time and date at job start Tue Mar 31 2020 13:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35899 * 117.00072 * 2 1 4 4 C 1.38816 * 120.01634 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.09206 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12523 * 359.97438 * 5 4 3 7 7 N 1.48013 * 119.97803 * 179.97438 * 6 5 4 8 8 O 1.21796 * 119.99807 * 0.02562 * 7 6 5 9 9 O 1.21797 * 120.00008 * 180.02562 * 7 6 5 10 10 C 1.38926 * 120.03843 * 359.97438 * 6 5 4 11 11 N 1.39668 * 120.04829 * 179.97438 * 10 6 5 12 12 C 1.46950 * 111.00327 * 243.80346 * 11 10 6 13 13 C 1.53053 * 109.36707 * 176.81163 * 12 11 10 14 14 N 1.46950 * 109.36273 * 58.39878 * 13 12 11 15 15 C 1.46903 * 110.99784 * 176.81275 * 14 13 12 16 16 C 1.50695 * 109.47083 * 58.99571 * 15 14 13 17 17 H 1.08005 * 120.00280 * 4.98507 * 16 15 14 18 18 C 1.37877 * 120.00219 * 184.99143 * 16 15 14 19 19 N 1.31515 * 120.00451 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47046 * 90.00262 * 20 18 16 22 22 H 1.48501 * 109.47343 * 210.00446 * 20 18 16 23 23 H 1.48501 * 109.47392 * 330.00928 * 20 18 16 24 24 C 1.46950 * 110.88195 * 300.68251 * 14 13 12 25 25 C 1.46960 * 110.99770 * 120.00187 * 11 10 6 26 26 C 1.38570 * 120.01649 * 180.25262 * 3 2 1 27 27 H 1.09004 * 109.47617 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46924 * 299.99714 * 1 2 3 29 29 H 1.08999 * 109.47640 * 59.99680 * 1 2 3 30 30 H 1.08001 * 119.95274 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.93532 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.49210 * 296.78003 * 12 11 10 33 33 H 1.09003 * 109.48899 * 56.84121 * 12 11 10 34 34 H 1.08997 * 109.48487 * 298.43253 * 13 12 11 35 35 H 1.09001 * 109.50844 * 178.37881 * 13 12 11 36 36 H 1.09003 * 109.47171 * 178.99327 * 15 14 13 37 37 H 1.09001 * 109.47537 * 298.99104 * 15 14 13 38 38 H 0.97003 * 120.00238 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.49210 * 299.35167 * 24 14 13 40 40 H 1.09003 * 109.48899 * 179.29049 * 24 14 13 41 41 H 1.08993 * 109.48736 * 303.15654 * 25 11 10 42 42 H 1.08998 * 109.48681 * 63.20597 * 25 11 10 43 43 H 1.08002 * 120.07079 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9159 3.6073 0.0000 6 6 3.2954 3.6844 -0.0005 7 7 3.9622 5.0058 -0.0017 8 8 3.2949 6.0247 -0.0017 9 8 5.1783 5.0743 -0.0026 10 6 4.0569 2.5224 0.0000 11 7 5.4514 2.6002 -0.0011 12 6 6.0101 2.0236 -1.2319 13 6 7.5305 2.1995 -1.2301 14 7 8.0952 1.5450 -0.0418 15 6 9.5620 1.6268 -0.0429 16 6 9.9844 3.0731 -0.0694 17 1 9.2413 3.8541 -0.0027 18 6 11.3195 3.3995 -0.1790 19 7 11.6882 4.6617 -0.2016 20 14 12.6048 2.0488 -0.2939 21 1 12.8290 1.6989 -1.7195 22 1 13.8776 2.5245 0.3052 23 1 12.1295 0.8493 0.4413 24 6 7.5365 2.1215 1.1890 25 6 6.0162 1.9456 1.1873 26 6 3.4297 1.2838 -0.0053 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2117 2.3182 0.0005 31 1 1.3255 4.5115 0.0000 32 1 5.7669 0.9622 -1.2793 33 1 5.5860 2.5331 -2.0972 34 1 7.7735 3.2619 -1.2103 35 1 7.9503 1.7471 -2.1286 36 1 9.9532 1.1505 0.8561 37 1 9.9537 1.1177 -0.9235 38 1 12.6275 4.8913 -0.2791 39 1 7.7797 3.1830 1.2364 40 1 7.9606 1.6120 2.0543 41 1 5.5967 2.3983 2.0857 42 1 5.7728 0.8833 1.1675 43 1 4.0193 0.3789 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:24 Heat of formation + Delta-G solvation = 0.538386 kcal Electronic energy + Delta-G solvation = -27831.834848 eV Core-core repulsion = 23880.942079 eV Total energy + Delta-G solvation = -3950.892769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.06600 -41.66991 -40.45791 -38.67461 -37.40022 -36.50525 -34.45319 -32.46531 -31.93426 -31.82551 -29.78729 -28.41376 -26.91822 -26.47687 -24.56484 -24.25707 -23.18880 -22.54244 -20.72658 -20.17223 -19.44573 -19.29656 -18.83346 -18.31939 -17.50822 -17.29039 -16.88368 -16.40444 -16.17897 -15.89434 -15.87619 -15.63242 -15.45533 -14.70400 -14.51861 -14.37385 -14.16109 -13.91882 -13.68569 -13.34743 -13.03028 -12.83804 -12.48001 -12.47230 -12.30073 -12.26556 -12.20689 -12.10570 -12.01959 -12.01283 -11.83727 -11.71514 -11.50246 -10.75907 -10.32433 -9.84340 -9.60990 -9.04048 -8.26755 -6.32989 -1.12564 -0.22846 0.38047 0.62918 1.37446 1.39189 1.51374 1.97300 2.14133 2.36675 2.47392 3.07417 3.25269 3.32131 3.57046 3.67132 3.81827 3.88543 4.08721 4.21652 4.26134 4.32300 4.36557 4.38824 4.40483 4.47753 4.57885 4.67352 4.71452 4.80903 4.84644 4.89075 5.01182 5.03239 5.10173 5.16156 5.22677 5.43641 5.53047 5.74204 5.96143 6.05937 6.15758 6.33567 6.35085 6.69881 6.76203 7.33327 8.90130 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.003480 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.102330 B = 8043.967576 C = 9178.789057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.315 6.315 3 C 0.202 3.798 4 C -0.196 4.196 5 C -0.004 4.004 6 C -0.092 4.092 7 N 0.038 4.962 8 O -0.196 6.196 9 O -0.177 6.177 10 C 0.194 3.806 11 N -0.517 5.517 12 C 0.082 3.918 13 C 0.066 3.934 14 N -0.523 5.523 15 C 0.162 3.838 16 C -0.550 4.550 17 H 0.031 0.969 18 C 0.007 3.993 19 N -0.951 5.951 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.242 1.242 24 C 0.064 3.936 25 C 0.080 3.920 26 C -0.190 4.190 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.193 0.807 31 H 0.175 0.825 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.015 0.985 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.013 0.987 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.421 -13.472 0.383 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.226 6.226 3 C 0.153 3.847 4 C -0.215 4.215 5 C -0.023 4.023 6 C -0.178 4.178 7 N 0.550 4.450 8 O -0.406 6.406 9 O -0.390 6.390 10 C 0.098 3.902 11 N -0.239 5.239 12 C -0.044 4.044 13 C -0.063 4.063 14 N -0.246 5.246 15 C 0.035 3.965 16 C -0.589 4.589 17 H 0.049 0.951 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.165 1.165 24 C -0.064 4.064 25 C -0.046 4.046 26 C -0.211 4.211 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.210 0.790 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -28.492 -14.186 0.376 31.831 hybrid contribution 1.354 1.108 -0.062 1.751 sum -27.138 -13.078 0.313 30.126 Atomic orbital electron populations 1.23649 0.74811 1.06677 1.03545 1.86175 1.24831 1.25377 1.86214 1.19214 0.91470 0.85710 0.88346 1.21601 1.02886 0.88965 1.08052 1.21058 0.89678 1.01310 0.90288 1.21325 0.93851 0.80953 1.21698 1.43816 1.01218 1.03136 0.96873 1.94409 1.65059 1.26315 1.54816 1.94759 0.95832 1.94286 1.54095 1.18393 0.89856 0.90259 0.91681 1.59843 1.00920 1.58614 1.04560 1.22153 0.93943 0.98225 0.90071 1.21915 0.93102 0.97214 0.94049 1.62704 1.06695 1.53240 1.02003 1.20025 0.85615 0.93650 0.97239 1.21936 0.93043 0.93442 1.50476 0.95119 1.26006 1.01243 0.97851 0.93959 1.70124 1.17391 1.19513 1.52062 0.85610 0.77576 0.79724 0.79339 1.19123 1.21284 1.16537 1.21947 0.93380 0.97602 0.93512 1.22175 0.93829 0.97536 0.91032 1.21054 0.93339 0.97731 1.08963 0.85847 0.90299 0.90302 0.79027 0.80800 0.91350 0.90655 0.96638 0.90205 0.94850 0.94759 0.92630 0.96835 0.89912 0.90407 0.91291 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.13 16 2 O -0.31 -3.55 10.49 -92.42 -0.97 -4.52 16 3 C 0.20 2.83 6.68 22.49 0.15 2.98 16 4 C -0.20 -2.09 9.04 22.39 0.20 -1.89 16 5 C 0.00 -0.07 9.54 22.24 0.21 0.15 16 6 C -0.09 -2.48 6.87 36.52 0.25 -2.23 16 7 N 0.04 1.36 4.45 -46.12 -0.21 1.15 16 8 O -0.20 -6.87 18.44 18.89 0.35 -6.52 16 9 O -0.18 -7.78 17.09 18.89 0.32 -7.46 16 10 C 0.19 5.10 4.71 38.20 0.18 5.28 16 11 N -0.52 -16.78 2.55 -694.86 -1.77 -18.55 16 12 C 0.08 2.58 5.35 86.31 0.46 3.05 16 13 C 0.07 2.67 5.24 86.31 0.45 3.12 16 14 N -0.52 -21.69 4.92 -900.31 -4.43 -26.11 16 15 C 0.16 7.77 4.21 85.55 0.36 8.13 16 16 C -0.55 -32.39 8.21 25.60 0.21 -32.18 16 17 H 0.03 2.08 6.07 -2.91 -0.02 2.06 16 18 C 0.01 0.41 5.47 84.65 0.46 0.87 16 19 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 20 Si 0.95 44.70 27.37 68.60 1.88 46.58 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.24 -10.36 6.69 99.48 0.67 -9.69 16 24 C 0.06 2.56 5.32 86.31 0.46 3.02 16 25 C 0.08 2.49 5.32 86.31 0.46 2.95 16 26 C -0.19 -3.67 8.57 22.49 0.19 -3.48 16 27 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.08 -0.04 7.66 -2.39 -0.02 -0.06 16 29 H 0.08 -0.04 7.66 -2.39 -0.02 -0.06 16 30 H 0.19 0.38 6.29 -2.91 -0.02 0.37 16 31 H 0.17 2.31 7.60 -2.91 -0.02 2.29 16 32 H 0.07 1.81 7.42 -2.39 -0.02 1.80 16 33 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.02 0.78 6.62 -2.39 -0.02 0.76 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.03 1.57 7.52 -2.39 -0.02 1.55 16 37 H 0.03 1.59 7.30 -2.39 -0.02 1.58 16 38 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 39 H 0.01 0.66 6.78 -2.39 -0.02 0.64 16 40 H 0.08 3.05 8.12 -2.39 -0.02 3.03 16 41 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 42 H 0.07 1.79 7.25 -2.39 -0.02 1.78 16 43 H 0.16 2.86 7.06 -2.91 -0.02 2.84 16 Total: -1.00 -79.83 348.71 1.63 -78.20 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.99 Total: 7.76 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.17 Total: -9.11 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -6.10 Total: -104.94 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.30 Total: -18.49 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -79.83 1.63 -78.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.736 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds