Wall clock time and date at job start Tue Mar 31 2020 13:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47159 * 2 1 4 4 C 1.42899 * 114.00244 * 183.69505 * 3 2 1 5 5 H 1.08999 * 109.47268 * 351.37843 * 4 3 2 6 6 C 1.50699 * 109.47217 * 231.37888 * 4 3 2 7 7 O 1.21288 * 119.99920 * 353.58594 * 6 4 3 8 8 N 1.34774 * 120.00388 * 173.58482 * 6 4 3 9 9 C 1.37121 * 120.00211 * 117.08115 * 8 6 4 10 10 H 1.08004 * 119.99779 * 167.32647 * 9 8 6 11 11 C 1.38876 * 120.00148 * 347.32554 * 9 8 6 12 12 N 1.31432 * 119.99806 * 358.65941 * 11 9 8 13 13 Si 1.86797 * 120.00185 * 178.65880 * 11 9 8 14 14 H 1.48496 * 109.47247 * 65.00135 * 13 11 9 15 15 H 1.48500 * 109.47029 * 185.00486 * 13 11 9 16 16 H 1.48503 * 109.47134 * 304.99921 * 13 11 9 17 17 C 1.39844 * 119.99841 * 297.08633 * 8 6 4 18 18 C 1.38975 * 120.05598 * 89.99595 * 17 8 6 19 19 C 1.38039 * 119.94995 * 180.02562 * 18 17 8 20 20 C 1.38539 * 120.05138 * 359.97438 * 19 18 17 21 21 F 1.35099 * 119.94585 * 180.02562 * 20 19 18 22 22 C 1.38495 * 120.10754 * 0.02562 * 20 19 18 23 23 C 1.38097 * 120.05040 * 359.72814 * 22 20 19 24 24 C 1.50690 * 120.02651 * 180.29552 * 23 22 20 25 25 C 1.53001 * 109.47470 * 111.37607 * 4 3 2 26 26 C 1.53000 * 117.49838 * 322.74957 * 25 4 3 27 27 C 1.53002 * 117.49521 * 31.41152 * 25 4 3 28 28 H 1.09002 * 109.46948 * 59.99923 * 1 2 3 29 29 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46888 * 299.99890 * 1 2 3 31 31 H 1.09000 * 109.47372 * 239.99901 * 2 1 3 32 32 H 1.08997 * 109.47350 * 120.00291 * 2 1 3 33 33 H 0.96999 * 119.99991 * 184.93980 * 12 11 9 34 34 H 1.08003 * 120.02149 * 0.02562 * 18 17 8 35 35 H 1.08003 * 119.97399 * 179.97438 * 19 18 17 36 36 H 1.07993 * 119.97849 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.47283 * 270.23393 * 24 23 22 38 38 H 1.09004 * 109.47429 * 30.23241 * 24 23 22 39 39 H 1.09005 * 109.47462 * 150.23364 * 24 23 22 40 40 H 1.09002 * 115.55199 * 177.07695 * 25 4 3 41 41 H 1.08995 * 117.49758 * 215.00051 * 26 25 4 42 42 H 1.09003 * 117.49497 * 0.02562 * 26 25 4 43 43 H 1.08992 * 117.50073 * 359.97438 * 27 25 4 44 44 H 1.09000 * 117.49707 * 144.99706 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4283 1.4610 -0.0841 5 1 3.8787 0.4741 0.0216 6 6 3.9263 2.3610 1.0173 7 8 3.1353 2.9483 1.7247 8 7 5.2506 2.5132 1.2163 9 6 5.8307 3.7454 1.0569 10 1 6.8370 3.9181 1.4088 11 6 5.1242 4.7714 0.4428 12 7 3.9093 4.5538 -0.0091 13 14 5.9005 6.4604 0.2592 14 1 7.0751 6.3698 -0.6447 15 1 4.9060 7.4025 -0.3142 16 1 6.3373 6.9518 1.5908 17 6 6.0330 1.4145 1.5852 18 6 6.6249 0.6222 0.6088 19 6 7.3964 -0.4621 0.9755 20 6 7.5814 -0.7606 2.3156 21 9 8.3373 -1.8220 2.6721 22 6 6.9925 0.0274 3.2905 23 6 6.2240 1.1162 2.9287 24 6 5.5891 1.9772 3.9900 25 6 3.8132 2.0545 -1.4408 26 6 2.9884 1.6295 -2.6574 27 6 2.8355 3.0404 -2.0835 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.4434 5.2479 -0.5011 34 1 6.4814 0.8548 -0.4360 35 1 7.8563 -1.0783 0.2170 36 1 7.1384 -0.2069 4.3346 37 1 4.6009 1.5861 4.2320 38 1 6.2118 1.9696 4.8847 39 1 5.4953 2.9986 3.6213 40 1 4.8781 2.2312 -1.5916 41 1 3.5107 1.5266 -3.6085 42 1 2.1713 0.9274 -2.4911 43 1 1.9180 3.2659 -1.5400 44 1 3.2573 3.8657 -2.6571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602393555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:10 Heat of formation + Delta-G solvation = -43.787267 kcal Electronic energy + Delta-G solvation = -28900.382052 eV Core-core repulsion = 24927.647217 eV Total energy + Delta-G solvation = -3972.734835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.58338 -39.73789 -38.40364 -36.87258 -35.30933 -34.09323 -32.29017 -31.79558 -30.88535 -28.73875 -27.32325 -26.48563 -24.49823 -22.58445 -22.22121 -21.41600 -21.30764 -20.36752 -19.29077 -17.34309 -16.82163 -16.57502 -16.18657 -15.86730 -15.46110 -15.28304 -14.71233 -14.35020 -14.28156 -13.90841 -13.72050 -13.42724 -13.08126 -12.93921 -12.81115 -12.50046 -12.28560 -12.24657 -11.79695 -11.48912 -11.34857 -11.22357 -11.15826 -11.02708 -10.81363 -10.71782 -10.65095 -10.56802 -10.39337 -10.22606 -9.59837 -9.51382 -9.28659 -9.02122 -8.54824 -8.30238 -7.77201 -7.40018 -6.07960 -3.66055 1.55471 1.61630 3.26673 3.32145 3.33361 3.79074 3.95201 4.11697 4.33597 4.59194 4.73104 4.97592 5.10740 5.17946 5.27432 5.29640 5.42649 5.54020 5.55946 5.64597 5.68279 5.75542 5.82972 5.86444 5.95840 6.03878 6.16848 6.18125 6.19620 6.22401 6.27369 6.36748 6.41666 6.47235 6.61885 6.63274 6.81899 6.86692 6.90316 7.14442 7.20770 7.25325 7.54258 7.81585 8.11648 8.98677 9.36705 9.58405 9.98967 10.98041 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.006766 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.049424 B = 4137.095100 C = 5810.729458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.352 6.352 4 C 0.108 3.892 5 H 0.056 0.944 6 C 0.580 3.420 7 O -0.481 6.481 8 N -0.516 5.516 9 C -0.293 4.293 10 H 0.085 0.915 11 C 0.018 3.982 12 N -0.854 5.854 13 Si 0.924 3.076 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.279 1.279 17 C 0.175 3.825 18 C -0.098 4.098 19 C -0.158 4.158 20 C 0.078 3.922 21 F -0.150 7.150 22 C -0.153 4.153 23 C -0.062 4.062 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.211 4.211 27 C -0.110 4.110 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.269 0.731 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -9.552 -1.234 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.270 6.270 4 C 0.045 3.955 5 H 0.074 0.926 6 C 0.369 3.631 7 O -0.350 6.350 8 N -0.245 5.245 9 C -0.418 4.418 10 H 0.102 0.898 11 C -0.186 4.186 12 N -0.494 5.494 13 Si 0.753 3.247 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.205 1.205 17 C 0.083 3.917 18 C -0.118 4.118 19 C -0.177 4.177 20 C 0.059 3.941 21 F -0.129 7.129 22 C -0.173 4.173 23 C -0.064 4.064 24 C -0.167 4.167 25 C -0.134 4.134 26 C -0.248 4.248 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.180 -8.904 -0.854 8.947 hybrid contribution 0.944 0.419 -0.340 1.088 sum 1.124 -8.485 -1.194 8.642 Atomic orbital electron populations 1.21691 0.94227 1.01371 1.03120 1.22517 0.95392 0.85345 0.99167 1.88051 1.20379 1.24078 1.94507 1.21662 0.81186 0.97426 0.95199 0.92569 1.18972 0.81286 0.80122 0.82732 1.90407 1.56211 1.43380 1.45002 1.40310 1.04397 1.05156 1.74597 1.19200 0.99161 0.85980 1.37439 0.89759 1.24986 0.96116 0.99247 0.98220 1.69519 1.10481 1.33508 1.35933 0.86023 0.78014 0.82514 0.78171 1.20785 1.21253 1.20478 1.17672 0.93773 0.89460 0.90813 1.21662 0.95724 0.93779 1.00634 1.20948 1.02673 1.00025 0.94057 1.17630 0.95970 0.87011 0.93480 1.91439 1.74148 1.54480 1.92792 1.20829 1.01026 0.96469 0.98935 1.20326 0.96179 0.94578 0.95335 1.20737 0.99253 1.01351 0.95384 1.21975 0.97545 1.04036 0.89843 1.23110 1.03602 1.01026 0.97064 1.22336 1.01326 0.90182 1.00867 0.92065 0.91806 0.91835 0.93998 0.94192 0.91905 0.84903 0.85380 0.85355 0.91571 0.92562 0.88896 0.87517 0.90282 0.89899 0.88594 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 37.16 0.38 -1.58 16 2 C 0.05 0.84 5.98 37.16 0.22 1.06 16 3 O -0.35 -7.28 7.88 -55.06 -0.43 -7.71 16 4 C 0.11 2.25 2.89 -27.88 -0.08 2.17 16 5 H 0.06 1.08 7.11 -51.93 -0.37 0.71 16 6 C 0.58 14.14 3.73 -10.99 -0.04 14.10 16 7 O -0.48 -13.65 15.94 -14.28 -0.23 -13.87 16 8 N -0.52 -11.93 1.72 -58.97 -0.10 -12.03 16 9 C -0.29 -7.30 9.06 -14.95 -0.14 -7.44 16 10 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 11 C 0.02 0.46 5.35 -17.49 -0.09 0.36 16 12 N -0.85 -22.40 7.08 55.49 0.39 -22.01 16 13 Si 0.92 20.60 29.56 -169.99 -5.02 15.58 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.18 3.49 4.70 -83.67 -0.39 3.09 16 18 C -0.10 -1.68 9.53 -39.38 -0.38 -2.06 16 19 C -0.16 -2.38 10.02 -39.54 -0.40 -2.77 16 20 C 0.08 1.22 7.30 -39.38 -0.29 0.93 16 21 F -0.15 -2.26 17.26 2.25 0.04 -2.22 16 22 C -0.15 -2.42 9.68 -39.54 -0.38 -2.80 16 23 C -0.06 -1.13 5.90 -104.42 -0.62 -1.75 16 24 C -0.11 -1.99 9.77 36.00 0.35 -1.64 16 25 C -0.12 -2.29 4.78 -90.62 -0.43 -2.73 16 26 C -0.21 -3.56 9.95 -26.69 -0.27 -3.82 16 27 C -0.11 -2.18 7.95 -26.69 -0.21 -2.40 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.60 7.44 -51.93 -0.39 0.21 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.27 7.00 8.23 -40.82 -0.34 6.66 16 34 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 35 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.09 1.98 6.91 -51.93 -0.36 1.62 16 40 H 0.11 2.23 8.14 -51.93 -0.42 1.80 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.35 6.69 -51.93 -0.35 1.00 16 43 H 0.10 2.12 7.57 -51.93 -0.39 1.72 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -28.69 366.79 -9.05 -37.74 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.47 Total: 6.26 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.76 Total: -7.27 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.29 Total: -34.04 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.66 Total: -21.58 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.69 -9.05 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602393555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.049 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds