Wall clock time and date at job start Tue Mar 31 2020 13:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47159 * 2 1 4 4 C 1.42899 * 114.00244 * 183.69505 * 3 2 1 5 5 H 1.08999 * 109.47268 * 351.37843 * 4 3 2 6 6 C 1.50699 * 109.47217 * 231.37888 * 4 3 2 7 7 O 1.21288 * 119.99920 * 353.58594 * 6 4 3 8 8 N 1.34774 * 120.00388 * 173.58482 * 6 4 3 9 9 C 1.37121 * 120.00211 * 117.08115 * 8 6 4 10 10 H 1.08004 * 119.99779 * 167.32647 * 9 8 6 11 11 C 1.38876 * 120.00148 * 347.32554 * 9 8 6 12 12 N 1.31432 * 119.99806 * 358.65941 * 11 9 8 13 13 Si 1.86797 * 120.00185 * 178.65880 * 11 9 8 14 14 H 1.48496 * 109.47247 * 65.00135 * 13 11 9 15 15 H 1.48500 * 109.47029 * 185.00486 * 13 11 9 16 16 H 1.48503 * 109.47134 * 304.99921 * 13 11 9 17 17 C 1.39844 * 119.99841 * 297.08633 * 8 6 4 18 18 C 1.38975 * 120.05598 * 89.99595 * 17 8 6 19 19 C 1.38039 * 119.94995 * 180.02562 * 18 17 8 20 20 C 1.38539 * 120.05138 * 359.97438 * 19 18 17 21 21 F 1.35099 * 119.94585 * 180.02562 * 20 19 18 22 22 C 1.38495 * 120.10754 * 0.02562 * 20 19 18 23 23 C 1.38097 * 120.05040 * 359.72814 * 22 20 19 24 24 C 1.50690 * 120.02651 * 180.29552 * 23 22 20 25 25 C 1.53001 * 109.47470 * 111.37607 * 4 3 2 26 26 C 1.53000 * 117.49838 * 322.74957 * 25 4 3 27 27 C 1.53002 * 117.49521 * 31.41152 * 25 4 3 28 28 H 1.09002 * 109.46948 * 59.99923 * 1 2 3 29 29 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46888 * 299.99890 * 1 2 3 31 31 H 1.09000 * 109.47372 * 239.99901 * 2 1 3 32 32 H 1.08997 * 109.47350 * 120.00291 * 2 1 3 33 33 H 0.96999 * 119.99991 * 184.93980 * 12 11 9 34 34 H 1.08003 * 120.02149 * 0.02562 * 18 17 8 35 35 H 1.08003 * 119.97399 * 179.97438 * 19 18 17 36 36 H 1.07993 * 119.97849 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.47283 * 270.23393 * 24 23 22 38 38 H 1.09004 * 109.47429 * 30.23241 * 24 23 22 39 39 H 1.09005 * 109.47462 * 150.23364 * 24 23 22 40 40 H 1.09002 * 115.55199 * 177.07695 * 25 4 3 41 41 H 1.08995 * 117.49758 * 215.00051 * 26 25 4 42 42 H 1.09003 * 117.49497 * 0.02562 * 26 25 4 43 43 H 1.08992 * 117.50073 * 359.97438 * 27 25 4 44 44 H 1.09000 * 117.49707 * 144.99706 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4283 1.4610 -0.0841 5 1 3.8787 0.4741 0.0216 6 6 3.9263 2.3610 1.0173 7 8 3.1353 2.9483 1.7247 8 7 5.2506 2.5132 1.2163 9 6 5.8307 3.7454 1.0569 10 1 6.8370 3.9181 1.4088 11 6 5.1242 4.7714 0.4428 12 7 3.9093 4.5538 -0.0091 13 14 5.9005 6.4604 0.2592 14 1 7.0751 6.3698 -0.6447 15 1 4.9060 7.4025 -0.3142 16 1 6.3373 6.9518 1.5908 17 6 6.0330 1.4145 1.5852 18 6 6.6249 0.6222 0.6088 19 6 7.3964 -0.4621 0.9755 20 6 7.5814 -0.7606 2.3156 21 9 8.3373 -1.8220 2.6721 22 6 6.9925 0.0274 3.2905 23 6 6.2240 1.1162 2.9287 24 6 5.5891 1.9772 3.9900 25 6 3.8132 2.0545 -1.4408 26 6 2.9884 1.6295 -2.6574 27 6 2.8355 3.0404 -2.0835 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.4434 5.2479 -0.5011 34 1 6.4814 0.8548 -0.4360 35 1 7.8563 -1.0783 0.2170 36 1 7.1384 -0.2069 4.3346 37 1 4.6009 1.5861 4.2320 38 1 6.2118 1.9696 4.8847 39 1 5.4953 2.9986 3.6213 40 1 4.8781 2.2312 -1.5916 41 1 3.5107 1.5266 -3.6085 42 1 2.1713 0.9274 -2.4911 43 1 1.9180 3.2659 -1.5400 44 1 3.2573 3.8657 -2.6571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602393555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:09 Heat of formation + Delta-G solvation = -56.042827 kcal Electronic energy + Delta-G solvation = -28900.913493 eV Core-core repulsion = 24927.647217 eV Total energy + Delta-G solvation = -3973.266276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.80756 -41.33249 -39.86591 -38.51434 -36.80773 -35.87775 -33.76749 -33.50462 -32.14790 -30.19773 -28.95415 -27.92773 -26.29058 -23.83072 -23.64239 -22.85440 -22.75156 -21.95091 -20.93485 -19.02142 -18.30540 -17.99099 -17.61174 -17.34695 -16.95663 -16.53160 -16.46694 -15.99171 -15.67297 -15.61926 -15.14103 -14.87244 -14.44751 -14.38735 -14.20050 -13.98471 -13.68844 -13.46520 -13.16832 -13.09839 -12.92752 -12.84472 -12.66180 -12.62416 -12.50054 -12.19418 -12.09747 -12.06824 -12.02788 -11.94861 -11.19039 -11.12446 -10.98876 -10.53826 -10.00580 -9.82079 -9.32552 -9.17785 -8.01216 -5.60018 0.20080 0.31493 1.44537 1.48619 1.53835 2.01151 2.42992 2.58084 2.73826 3.20935 3.30316 3.31403 3.39374 3.85912 3.92037 3.94662 4.06319 4.19275 4.24592 4.25299 4.41037 4.43379 4.48819 4.49326 4.58558 4.68701 4.74742 4.81172 4.87172 4.91566 4.99305 5.04625 5.08076 5.16963 5.24207 5.26987 5.28690 5.38826 5.44717 5.52688 5.58923 5.76348 5.93397 6.19094 6.41433 7.06863 7.52491 7.79503 8.14923 9.02180 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.006766 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.049424 B = 4137.095100 C = 5810.729458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 O -0.380 6.380 4 C 0.118 3.882 5 H 0.072 0.928 6 C 0.577 3.423 7 O -0.541 6.541 8 N -0.520 5.520 9 C -0.297 4.297 10 H 0.082 0.918 11 C -0.028 4.028 12 N -0.869 5.869 13 Si 0.979 3.021 14 H -0.269 1.269 15 H -0.294 1.294 16 H -0.283 1.283 17 C 0.139 3.861 18 C -0.097 4.097 19 C -0.142 4.142 20 C 0.084 3.916 21 F -0.142 7.142 22 C -0.144 4.144 23 C -0.079 4.079 24 C -0.102 4.102 25 C -0.127 4.127 26 C -0.167 4.167 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.260 0.740 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -12.199 -2.207 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 O -0.299 6.299 4 C 0.056 3.944 5 H 0.090 0.910 6 C 0.368 3.632 7 O -0.414 6.414 8 N -0.248 5.248 9 C -0.423 4.423 10 H 0.100 0.900 11 C -0.229 4.229 12 N -0.511 5.511 13 Si 0.807 3.193 14 H -0.195 1.195 15 H -0.220 1.220 16 H -0.209 1.209 17 C 0.047 3.953 18 C -0.117 4.117 19 C -0.161 4.161 20 C 0.065 3.935 21 F -0.121 7.121 22 C -0.163 4.163 23 C -0.081 4.081 24 C -0.159 4.159 25 C -0.146 4.146 26 C -0.203 4.203 27 C -0.161 4.161 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.596 -11.594 -1.835 11.847 hybrid contribution 0.565 1.147 0.060 1.280 sum 2.162 -10.447 -1.776 10.815 Atomic orbital electron populations 1.21708 0.92444 1.03390 1.02326 1.22841 0.96895 0.83411 1.00231 1.88037 1.20045 1.27190 1.94609 1.21422 0.81652 0.97213 0.94124 0.90977 1.19720 0.81332 0.79587 0.82540 1.90365 1.57670 1.46401 1.46995 1.40263 1.04456 1.05727 1.74338 1.19382 0.98930 0.87339 1.36629 0.90048 1.25667 0.96665 1.01967 0.98613 1.69658 1.11288 1.33617 1.36496 0.85166 0.77364 0.79013 0.77795 1.19464 1.22024 1.20931 1.17969 0.95384 0.89752 0.92160 1.21605 0.95851 0.94022 1.00209 1.21194 1.01125 0.99019 0.94762 1.17681 0.95405 0.86818 0.93614 1.91469 1.73831 1.54021 1.92749 1.20979 0.99613 0.95181 1.00500 1.20345 0.97328 0.95767 0.94631 1.20600 0.99697 0.98864 0.96699 1.21866 0.96946 1.05091 0.90689 1.23150 1.02386 0.98245 0.96550 1.22127 1.00281 0.91867 1.01847 0.92054 0.88302 0.93455 0.91713 0.94171 0.92868 0.84533 0.82042 0.82805 0.92409 0.89402 0.93053 0.88747 0.87424 0.88693 0.91469 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 10.28 71.98 0.74 -2.84 16 2 C 0.04 1.30 5.98 71.98 0.43 1.73 16 3 O -0.38 -15.90 7.88 -130.02 -1.02 -16.93 16 4 C 0.12 4.99 2.89 29.85 0.09 5.07 16 5 H 0.07 2.73 7.11 -2.39 -0.02 2.71 16 6 C 0.58 29.22 3.73 87.66 0.33 29.54 16 7 O -0.54 -32.50 15.94 15.90 0.25 -32.24 16 8 N -0.52 -24.79 1.72 -458.87 -0.79 -25.58 16 9 C -0.30 -15.33 9.06 84.02 0.76 -14.57 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 11 C -0.03 -1.48 5.35 84.91 0.45 -1.03 16 12 N -0.87 -47.73 7.08 21.65 0.15 -47.57 16 13 Si 0.98 43.59 29.56 68.60 2.03 45.61 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 C 0.14 5.52 4.70 38.21 0.18 5.70 16 18 C -0.10 -3.18 9.53 22.40 0.21 -2.97 16 19 C -0.14 -3.80 10.02 22.29 0.22 -3.58 16 20 C 0.08 2.32 7.30 22.40 0.16 2.49 16 21 F -0.14 -3.72 17.26 44.97 0.78 -2.94 16 22 C -0.14 -4.18 9.68 22.30 0.22 -3.96 16 23 C -0.08 -2.83 5.90 -19.73 -0.12 -2.95 16 24 C -0.10 -3.74 9.77 71.23 0.70 -3.05 16 25 C -0.13 -5.04 4.78 -10.79 -0.05 -5.09 16 26 C -0.17 -5.26 9.95 30.62 0.30 -4.96 16 27 C -0.12 -5.00 7.95 30.62 0.24 -4.75 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.67 7.44 -2.39 -0.02 1.65 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.26 14.25 8.23 -92.71 -0.76 13.49 16 34 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.56 8.09 -2.38 -0.02 2.54 16 39 H 0.05 2.30 6.91 -2.38 -0.02 2.29 16 40 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 41 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.09 2.80 6.69 -2.39 -0.02 2.78 16 43 H 0.07 3.10 7.57 -2.39 -0.02 3.08 16 44 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -65.95 366.79 7.27 -58.68 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 1.01 Total: 26.19 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.87 Total: -5.21 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.64 Total: -73.16 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.77 Total: -49.17 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.94 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.95 7.27 -58.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602393555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.634 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds