Wall clock time and date at job start Tue Mar 31 2020 13:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46699 * 2 1 4 4 C 1.42901 * 113.99728 * 184.81911 * 3 2 1 5 5 H 1.08998 * 109.47226 * 329.54548 * 4 3 2 6 6 C 1.50701 * 109.46959 * 89.54596 * 4 3 2 7 7 O 1.21276 * 120.00035 * 4.99516 * 6 4 3 8 8 N 1.34778 * 119.99844 * 185.00133 * 6 4 3 9 9 C 1.37123 * 119.99907 * 359.71927 * 8 6 4 10 10 H 1.08003 * 120.00133 * 0.02562 * 9 8 6 11 11 C 1.38881 * 119.99879 * 180.02562 * 9 8 6 12 12 N 1.31425 * 120.00166 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99867 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47562 * 90.00230 * 13 11 9 15 15 H 1.48507 * 109.47196 * 210.00257 * 13 11 9 16 16 H 1.48500 * 109.47132 * 329.99755 * 13 11 9 17 17 C 1.39840 * 120.00085 * 179.97438 * 8 6 4 18 18 C 1.38980 * 120.05016 * 89.71983 * 17 8 6 19 19 C 1.38040 * 119.94499 * 179.72483 * 18 17 8 20 20 C 1.38540 * 120.05077 * 0.57551 * 19 18 17 21 21 F 1.35100 * 119.94844 * 179.72223 * 20 19 18 22 22 C 1.38500 * 120.10819 * 359.70237 * 20 19 18 23 23 C 1.38088 * 120.04578 * 359.97438 * 22 20 19 24 24 C 1.50704 * 120.02097 * 179.97438 * 23 22 20 25 25 C 1.52997 * 109.47224 * 209.54419 * 4 3 2 26 26 C 1.53001 * 117.49989 * 122.49661 * 25 4 3 27 27 C 1.53005 * 117.49681 * 53.83643 * 25 4 3 28 28 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47687 * 300.00061 * 1 2 3 30 30 H 1.08995 * 109.47418 * 60.00506 * 1 2 3 31 31 H 1.08994 * 109.47220 * 239.99956 * 2 1 3 32 32 H 1.08992 * 109.46919 * 119.99420 * 2 1 3 33 33 H 0.97006 * 120.00307 * 180.02562 * 12 11 9 34 34 H 1.08002 * 120.02503 * 0.02562 * 18 17 8 35 35 H 1.08002 * 119.97620 * 180.27704 * 19 18 17 36 36 H 1.07994 * 119.97582 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.47180 * 270.02507 * 24 23 22 38 38 H 1.09000 * 109.47103 * 30.02836 * 24 23 22 39 39 H 1.09000 * 109.46662 * 150.02741 * 24 23 22 40 40 H 1.08999 * 115.55028 * 268.17341 * 25 4 3 41 41 H 1.08995 * 117.49513 * 359.97438 * 26 25 4 42 42 H 1.09000 * 117.49688 * 145.02247 * 26 25 4 43 43 H 1.09000 * 117.49702 * 214.97903 * 27 25 4 44 44 H 1.08992 * 117.49805 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4265 1.4618 -0.1097 5 1 3.8976 0.5936 0.3512 6 6 3.8140 1.5305 -1.5644 7 8 2.9550 1.5774 -2.4192 8 7 5.1152 1.5399 -1.9154 9 6 6.0865 1.4926 -0.9486 10 1 5.8087 1.4475 0.0942 11 6 7.4273 1.5027 -1.3102 12 7 7.7653 1.5582 -2.5791 13 14 8.7504 1.4376 0.0068 14 1 9.0948 0.0217 0.2931 15 1 9.9602 2.1544 -0.4709 16 1 8.2483 2.0851 1.2453 17 6 5.4749 1.6031 -3.2653 18 6 5.6553 2.8363 -3.8804 19 6 6.0159 2.8962 -5.2115 20 6 6.1863 1.7285 -5.9373 21 9 6.5337 1.7896 -7.2414 22 6 6.0014 0.4985 -5.3280 23 6 5.6472 0.4335 -3.9949 24 6 5.4456 -0.9051 -3.3326 25 6 3.8922 2.7331 0.6028 26 6 4.9201 2.5776 1.7254 27 6 3.4667 2.9223 2.0603 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 8.7019 1.5649 -2.8317 34 1 5.5182 3.7469 -3.3160 35 1 6.1606 3.8541 -5.6888 36 1 6.1352 -0.4104 -5.8957 37 1 4.4039 -1.2086 -3.4363 38 1 6.0889 -1.6459 -3.8075 39 1 5.6983 -0.8289 -2.2751 40 1 3.9597 3.6240 -0.0215 41 1 5.2641 1.5695 1.9566 42 1 5.6636 3.3664 1.8398 43 1 3.2548 3.9378 2.3949 44 1 2.8547 2.1414 2.5113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602393557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:13 Heat of formation + Delta-G solvation = -59.515063 kcal Electronic energy + Delta-G solvation = -28739.421024 eV Core-core repulsion = 24766.004181 eV Total energy + Delta-G solvation = -3973.416843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.04038 -39.90094 -38.32434 -36.58273 -36.17370 -34.61468 -31.81244 -31.62018 -31.04335 -29.09986 -27.10325 -26.09753 -24.82660 -22.72352 -21.98489 -21.85253 -20.99517 -20.40702 -19.31920 -17.99992 -17.01475 -16.30402 -15.91552 -15.70051 -15.07830 -14.90677 -14.81401 -14.72123 -14.68605 -14.08582 -13.44609 -13.26087 -12.98031 -12.71686 -12.58215 -12.47416 -12.41045 -12.28468 -11.95254 -11.68637 -11.47562 -11.29570 -11.24995 -11.07504 -11.05213 -10.78174 -10.69473 -10.57197 -10.37900 -10.26296 -9.95302 -9.75925 -9.61678 -9.46316 -8.30655 -8.15403 -7.84787 -7.61524 -6.14119 -4.07095 2.27978 2.32207 3.01191 3.11250 3.14439 3.57514 3.75211 3.96545 4.34864 4.64487 4.66724 4.96900 5.16857 5.19284 5.30420 5.33510 5.36427 5.49738 5.58739 5.65498 5.67084 5.70204 5.90424 5.93604 5.97870 6.02365 6.08479 6.19128 6.24675 6.25584 6.33133 6.39422 6.42820 6.45782 6.60802 6.63325 6.78027 7.01777 7.09825 7.21787 7.30446 7.49897 7.58062 7.66153 7.89181 8.35645 8.92873 9.27323 9.69656 10.55494 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.006091 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.221770 B = 4595.501841 C = 6132.142649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.359 6.359 4 C 0.125 3.875 5 H 0.076 0.924 6 C 0.445 3.555 7 O -0.579 6.579 8 N -0.412 5.412 9 C -0.346 4.346 10 H 0.118 0.882 11 C 0.038 3.962 12 N -0.854 5.854 13 Si 0.918 3.082 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.266 1.266 17 C 0.259 3.741 18 C -0.073 4.073 19 C -0.150 4.150 20 C 0.062 3.938 21 F -0.160 7.160 22 C -0.148 4.148 23 C -0.042 4.042 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.160 4.160 27 C -0.174 4.174 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.272 0.728 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -1.935 5.430 6.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.064 3.936 5 H 0.093 0.907 6 C 0.234 3.766 7 O -0.462 6.462 8 N -0.130 5.130 9 C -0.471 4.471 10 H 0.135 0.865 11 C -0.168 4.168 12 N -0.491 5.491 13 Si 0.745 3.255 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.191 1.191 17 C 0.168 3.832 18 C -0.093 4.093 19 C -0.169 4.169 20 C 0.043 3.957 21 F -0.139 7.139 22 C -0.168 4.168 23 C -0.044 4.044 24 C -0.158 4.158 25 C -0.144 4.144 26 C -0.197 4.197 27 C -0.211 4.211 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.150 -1.752 4.886 6.646 hybrid contribution 1.469 -0.165 0.247 1.499 sum -2.681 -1.917 5.133 6.100 Atomic orbital electron populations 1.21684 0.94133 1.01601 1.02906 1.22436 0.95320 0.84456 0.99637 1.87918 1.20188 1.25777 1.93813 1.21186 0.81744 0.97469 0.93185 0.90671 1.20570 0.82109 0.82953 0.90948 1.90597 1.49199 1.54940 1.51495 1.41402 1.04779 1.63336 1.03483 1.20125 0.85344 1.52348 0.89328 0.86505 1.25241 0.98335 0.96401 0.96820 1.69839 1.18306 1.46507 1.14433 0.86039 0.80437 0.78488 0.80553 1.20364 1.20807 1.19087 1.16768 0.91504 0.91619 0.83318 1.20659 0.98325 0.97147 0.93177 1.20549 1.05243 0.96235 0.94901 1.17393 1.05647 0.94752 0.77883 1.91372 1.90542 1.97423 1.34582 1.20459 1.05662 0.95541 0.95099 1.19410 0.97746 0.95014 0.92231 1.20589 1.00021 0.93288 1.01913 1.21902 1.03531 0.98363 0.90608 1.23002 0.91996 1.02944 1.01768 1.22920 0.97832 1.02289 0.98089 0.91651 0.92293 0.91688 0.93198 0.94114 0.91545 0.87001 0.86626 0.86638 0.92723 0.92885 0.90449 0.87407 0.88686 0.88450 0.89159 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.16 0.38 -1.50 16 2 C 0.06 0.91 6.44 37.16 0.24 1.15 16 3 O -0.36 -6.73 9.32 -55.09 -0.51 -7.25 16 4 C 0.13 2.39 1.97 -27.88 -0.05 2.33 16 5 H 0.08 1.36 7.07 -51.93 -0.37 0.99 16 6 C 0.45 10.20 6.92 -10.98 -0.08 10.13 16 7 O -0.58 -15.04 16.48 -14.30 -0.24 -15.27 16 8 N -0.41 -9.52 1.78 -58.97 -0.10 -9.63 16 9 C -0.35 -7.72 8.14 -14.95 -0.12 -7.84 16 10 H 0.12 2.39 3.12 -52.48 -0.16 2.23 16 11 C 0.04 0.86 5.45 -17.49 -0.10 0.77 16 12 N -0.85 -20.57 9.34 55.49 0.52 -20.05 16 13 Si 0.92 18.04 29.55 -169.99 -5.02 13.02 16 14 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 C 0.26 6.15 2.18 -83.67 -0.18 5.97 16 18 C -0.07 -1.68 9.09 -39.38 -0.36 -2.04 16 19 C -0.15 -3.17 10.02 -39.54 -0.40 -3.57 16 20 C 0.06 1.33 7.30 -39.37 -0.29 1.04 16 21 F -0.16 -3.23 17.26 2.25 0.04 -3.19 16 22 C -0.15 -3.13 9.67 -39.54 -0.38 -3.52 16 23 C -0.04 -0.95 5.00 -104.42 -0.52 -1.47 16 24 C -0.10 -2.04 9.77 36.01 0.35 -1.69 16 25 C -0.13 -2.16 4.41 -90.62 -0.40 -2.56 16 26 C -0.16 -2.39 8.32 -26.69 -0.22 -2.61 16 27 C -0.17 -2.43 10.05 -26.69 -0.27 -2.70 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.08 1.66 6.94 -51.93 -0.36 1.30 16 40 H 0.11 2.01 8.06 -51.93 -0.42 1.59 16 41 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 42 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -27.47 366.50 -8.51 -35.98 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.32 Total: 8.98 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.39 Total: -8.12 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.41 Total: -29.68 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.75 Total: -22.52 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.47 -8.51 -35.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602393557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.534 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds