Wall clock time and date at job start Tue Mar 31 2020 13:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46699 * 2 1 4 4 C 1.42901 * 113.99728 * 184.81911 * 3 2 1 5 5 H 1.08998 * 109.47226 * 329.54548 * 4 3 2 6 6 C 1.50701 * 109.46959 * 89.54596 * 4 3 2 7 7 O 1.21276 * 120.00035 * 4.99516 * 6 4 3 8 8 N 1.34778 * 119.99844 * 185.00133 * 6 4 3 9 9 C 1.37123 * 119.99907 * 359.71927 * 8 6 4 10 10 H 1.08003 * 120.00133 * 0.02562 * 9 8 6 11 11 C 1.38881 * 119.99879 * 180.02562 * 9 8 6 12 12 N 1.31425 * 120.00166 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99867 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47562 * 90.00230 * 13 11 9 15 15 H 1.48507 * 109.47196 * 210.00257 * 13 11 9 16 16 H 1.48500 * 109.47132 * 329.99755 * 13 11 9 17 17 C 1.39840 * 120.00085 * 179.97438 * 8 6 4 18 18 C 1.38980 * 120.05016 * 89.71983 * 17 8 6 19 19 C 1.38040 * 119.94499 * 179.72483 * 18 17 8 20 20 C 1.38540 * 120.05077 * 0.57551 * 19 18 17 21 21 F 1.35100 * 119.94844 * 179.72223 * 20 19 18 22 22 C 1.38500 * 120.10819 * 359.70237 * 20 19 18 23 23 C 1.38088 * 120.04578 * 359.97438 * 22 20 19 24 24 C 1.50704 * 120.02097 * 179.97438 * 23 22 20 25 25 C 1.52997 * 109.47224 * 209.54419 * 4 3 2 26 26 C 1.53001 * 117.49989 * 122.49661 * 25 4 3 27 27 C 1.53005 * 117.49681 * 53.83643 * 25 4 3 28 28 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47687 * 300.00061 * 1 2 3 30 30 H 1.08995 * 109.47418 * 60.00506 * 1 2 3 31 31 H 1.08994 * 109.47220 * 239.99956 * 2 1 3 32 32 H 1.08992 * 109.46919 * 119.99420 * 2 1 3 33 33 H 0.97006 * 120.00307 * 180.02562 * 12 11 9 34 34 H 1.08002 * 120.02503 * 0.02562 * 18 17 8 35 35 H 1.08002 * 119.97620 * 180.27704 * 19 18 17 36 36 H 1.07994 * 119.97582 * 180.02562 * 22 20 19 37 37 H 1.09001 * 109.47180 * 270.02507 * 24 23 22 38 38 H 1.09000 * 109.47103 * 30.02836 * 24 23 22 39 39 H 1.09000 * 109.46662 * 150.02741 * 24 23 22 40 40 H 1.08999 * 115.55028 * 268.17341 * 25 4 3 41 41 H 1.08995 * 117.49513 * 359.97438 * 26 25 4 42 42 H 1.09000 * 117.49688 * 145.02247 * 26 25 4 43 43 H 1.09000 * 117.49702 * 214.97903 * 27 25 4 44 44 H 1.08992 * 117.49805 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4265 1.4618 -0.1097 5 1 3.8976 0.5936 0.3512 6 6 3.8140 1.5305 -1.5644 7 8 2.9550 1.5774 -2.4192 8 7 5.1152 1.5399 -1.9154 9 6 6.0865 1.4926 -0.9486 10 1 5.8087 1.4475 0.0942 11 6 7.4273 1.5027 -1.3102 12 7 7.7653 1.5582 -2.5791 13 14 8.7504 1.4376 0.0068 14 1 9.0948 0.0217 0.2931 15 1 9.9602 2.1544 -0.4709 16 1 8.2483 2.0851 1.2453 17 6 5.4749 1.6031 -3.2653 18 6 5.6553 2.8363 -3.8804 19 6 6.0159 2.8962 -5.2115 20 6 6.1863 1.7285 -5.9373 21 9 6.5337 1.7896 -7.2414 22 6 6.0014 0.4985 -5.3280 23 6 5.6472 0.4335 -3.9949 24 6 5.4456 -0.9051 -3.3326 25 6 3.8922 2.7331 0.6028 26 6 4.9201 2.5776 1.7254 27 6 3.4667 2.9223 2.0603 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 8.7019 1.5649 -2.8317 34 1 5.5182 3.7469 -3.3160 35 1 6.1606 3.8541 -5.6888 36 1 6.1352 -0.4104 -5.8957 37 1 4.4039 -1.2086 -3.4363 38 1 6.0889 -1.6459 -3.8075 39 1 5.6983 -0.8289 -2.2751 40 1 3.9597 3.6240 -0.0215 41 1 5.2641 1.5695 1.9566 42 1 5.6636 3.3664 1.8398 43 1 3.2548 3.9378 2.3949 44 1 2.8547 2.1414 2.5113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602393557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:12 Heat of formation + Delta-G solvation = -70.522708 kcal Electronic energy + Delta-G solvation = -28739.898352 eV Core-core repulsion = 24766.004181 eV Total energy + Delta-G solvation = -3973.894171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.69374 -41.56876 -39.85118 -38.21620 -37.48762 -36.33950 -33.53281 -33.35480 -32.24023 -30.74618 -28.62760 -27.75325 -26.55085 -24.02429 -23.47840 -23.10890 -22.59635 -21.88242 -20.99410 -19.66071 -18.57627 -17.97304 -17.45981 -17.28459 -16.68076 -16.51297 -16.37294 -16.25083 -15.96279 -15.61388 -15.06935 -14.92649 -14.49238 -14.24900 -14.20068 -14.08344 -13.87567 -13.69388 -13.31435 -13.23696 -12.89250 -12.87343 -12.73455 -12.44998 -12.37553 -12.28935 -12.16012 -12.08747 -11.99575 -11.82487 -11.33922 -11.24668 -11.08403 -10.85211 -9.97636 -9.94090 -9.56815 -9.32877 -7.88329 -5.85336 0.56211 0.59762 1.43555 1.52033 1.60793 1.88790 2.25423 2.48472 2.86090 2.94678 3.25024 3.30938 3.49828 3.83558 3.98567 4.00488 4.06249 4.07498 4.17356 4.29901 4.33710 4.36194 4.42308 4.50743 4.62926 4.73886 4.75278 4.78855 4.86939 4.89247 4.94110 5.06469 5.07455 5.10625 5.26862 5.29602 5.32266 5.35861 5.40417 5.48924 5.56983 5.76833 5.92837 6.17382 6.22474 6.60808 7.16360 7.52929 7.94327 8.80169 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.006091 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.221770 B = 4595.501841 C = 6132.142649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 O -0.374 6.374 4 C 0.135 3.865 5 H 0.086 0.914 6 C 0.433 3.567 7 O -0.622 6.622 8 N -0.413 5.413 9 C -0.350 4.350 10 H 0.135 0.865 11 C -0.001 4.001 12 N -0.876 5.876 13 Si 0.975 3.025 14 H -0.278 1.278 15 H -0.295 1.295 16 H -0.246 1.246 17 C 0.239 3.761 18 C -0.095 4.095 19 C -0.149 4.149 20 C 0.057 3.943 21 F -0.153 7.153 22 C -0.149 4.149 23 C -0.062 4.062 24 C -0.092 4.092 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.146 4.146 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -2.624 7.308 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 O -0.293 6.293 4 C 0.074 3.926 5 H 0.103 0.897 6 C 0.223 3.777 7 O -0.508 6.508 8 N -0.130 5.130 9 C -0.476 4.476 10 H 0.152 0.848 11 C -0.204 4.204 12 N -0.513 5.513 13 Si 0.799 3.201 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.169 1.169 17 C 0.147 3.853 18 C -0.115 4.115 19 C -0.168 4.168 20 C 0.037 3.963 21 F -0.132 7.132 22 C -0.168 4.168 23 C -0.064 4.064 24 C -0.149 4.149 25 C -0.175 4.175 26 C -0.191 4.191 27 C -0.183 4.183 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.981 -2.442 6.784 8.236 hybrid contribution 1.393 0.056 -0.408 1.453 sum -2.587 -2.385 6.376 7.282 Atomic orbital electron populations 1.21693 0.92086 1.03365 1.02580 1.22700 0.97065 0.83193 0.99770 1.87908 1.20012 1.27755 1.93600 1.21095 0.82165 0.98708 0.90589 0.89667 1.21367 0.81610 0.82201 0.92500 1.90547 1.50190 1.56997 1.53108 1.41599 1.05163 1.62613 1.03641 1.20546 0.85289 1.51735 0.90003 0.84777 1.25964 0.99944 0.96074 0.98392 1.70001 1.17908 1.47412 1.15996 0.85164 0.77503 0.78236 0.79175 1.20338 1.22183 1.16886 1.17107 0.91884 0.92328 0.83972 1.20737 0.99770 0.96869 0.94134 1.20772 1.04227 0.97515 0.94327 1.17466 1.05672 0.94878 0.78241 1.91387 1.90444 1.97403 1.33927 1.20749 1.04596 0.96605 0.94869 1.19713 0.98131 0.95562 0.92965 1.20519 1.00667 0.92906 1.00822 1.21784 1.06977 0.96795 0.91983 1.23085 0.92633 1.03639 0.99706 1.23007 0.97021 1.03709 0.94530 0.88865 0.90961 0.93596 0.95522 0.91403 0.92329 0.87832 0.84329 0.84157 0.92399 0.90663 0.92124 0.89812 0.87893 0.87878 0.87413 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 10.28 71.98 0.74 -2.67 16 2 C 0.05 1.49 6.44 71.98 0.46 1.95 16 3 O -0.37 -13.93 9.32 -129.99 -1.21 -15.14 16 4 C 0.14 5.15 1.97 29.85 0.06 5.21 16 5 H 0.09 3.00 7.07 -2.39 -0.02 2.99 16 6 C 0.43 20.37 6.92 87.66 0.61 20.98 16 7 O -0.62 -33.64 16.48 15.97 0.26 -33.38 16 8 N -0.41 -19.51 1.78 -458.88 -0.82 -20.32 16 9 C -0.35 -15.61 8.14 84.02 0.68 -14.93 16 10 H 0.14 5.34 3.12 -2.91 -0.01 5.33 16 11 C 0.00 -0.03 5.45 84.91 0.46 0.43 16 12 N -0.88 -42.51 9.34 21.65 0.20 -42.31 16 13 Si 0.97 36.12 29.55 68.60 2.03 38.15 16 14 H -0.28 -10.24 7.11 99.48 0.71 -9.54 16 15 H -0.30 -11.53 7.11 99.48 0.71 -10.83 16 16 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 17 C 0.24 11.57 2.18 38.21 0.08 11.65 16 18 C -0.10 -4.51 9.09 22.40 0.20 -4.30 16 19 C -0.15 -6.35 10.02 22.29 0.22 -6.13 16 20 C 0.06 2.38 7.30 22.40 0.16 2.55 16 21 F -0.15 -5.98 17.26 44.97 0.78 -5.20 16 22 C -0.15 -6.23 9.67 22.30 0.22 -6.02 16 23 C -0.06 -2.81 5.00 -19.73 -0.10 -2.91 16 24 C -0.09 -3.72 9.77 71.24 0.70 -3.03 16 25 C -0.16 -5.29 4.41 -10.79 -0.05 -5.34 16 26 C -0.15 -4.22 8.32 30.62 0.25 -3.96 16 27 C -0.15 -3.68 10.05 30.62 0.31 -3.37 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.03 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.27 12.78 8.31 -92.70 -0.77 12.01 16 34 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 36 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 39 H 0.06 2.62 6.94 -2.39 -0.02 2.60 16 40 H 0.08 3.21 8.06 -2.39 -0.02 3.19 16 41 H 0.10 2.67 7.44 -2.39 -0.02 2.65 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -60.21 366.50 7.26 -52.95 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 1.01 Total: 35.14 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.02 Total: -9.88 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.61 Total: -62.63 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.95 Total: -48.52 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -60.21 7.26 -52.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602393557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.576 kcal (2) G-P(sol) polarization free energy of solvation -60.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds