Wall clock time and date at job start Tue Mar 31 2020 12:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47016 * 2 1 4 4 C 1.46504 * 119.99956 * 269.72488 * 3 2 1 5 5 C 1.50694 * 109.47171 * 270.27766 * 4 3 2 6 6 H 1.08008 * 120.00394 * 359.97438 * 5 4 3 7 7 C 1.37890 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31503 * 119.99974 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99551 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46977 * 89.99968 * 9 7 5 11 11 H 1.48499 * 109.46890 * 209.99944 * 9 7 5 12 12 H 1.48496 * 109.47118 * 329.99757 * 9 7 5 13 13 C 1.34773 * 120.00042 * 90.00566 * 3 2 1 14 14 O 1.21581 * 119.99805 * 179.72368 * 13 3 2 15 15 N 1.34774 * 120.00127 * 359.71779 * 13 3 2 16 16 C 1.39397 * 120.00335 * 174.86817 * 15 13 3 17 17 C 1.39043 * 119.69818 * 185.05099 * 16 15 13 18 18 C 1.38346 * 119.09926 * 179.75507 * 17 16 15 19 19 C 1.38851 * 118.49590 * 0.51612 * 18 17 16 20 20 C 1.38058 * 119.31153 * 359.72457 * 19 18 17 21 21 C 1.50700 * 119.57389 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.46929 * 125.02292 * 21 20 19 23 23 O 1.20825 * 120.00548 * 359.97438 * 22 21 20 24 24 O 1.34235 * 119.99790 * 180.02562 * 22 21 20 25 25 C 1.45200 * 116.99767 * 179.97438 * 24 22 21 26 26 N 1.31942 * 120.84961 * 0.02562 * 20 19 18 27 27 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46623 * 300.00102 * 1 2 3 29 29 H 1.09000 * 109.47432 * 59.99752 * 1 2 3 30 30 H 1.09001 * 109.46763 * 240.00432 * 2 1 3 31 31 H 1.09000 * 109.47432 * 120.00248 * 2 1 3 32 32 H 1.09003 * 109.46877 * 30.27923 * 4 3 2 33 33 H 1.09002 * 109.46862 * 150.27521 * 4 3 2 34 34 H 0.97006 * 120.00013 * 180.02562 * 8 7 5 35 35 H 0.97010 * 119.99616 * 354.87655 * 15 13 3 36 36 H 1.07998 * 120.45096 * 0.02562 * 17 16 15 37 37 H 1.08004 * 120.75372 * 180.21789 * 18 17 16 38 38 H 1.07996 * 120.34173 * 179.75281 * 19 18 17 39 39 H 1.08998 * 109.47240 * 245.01860 * 21 20 19 40 40 H 1.08997 * 109.47213 * 5.02406 * 21 20 19 41 41 H 1.08999 * 109.47386 * 59.99979 * 25 24 22 42 42 H 1.09001 * 109.46789 * 179.97438 * 25 24 22 43 43 H 1.09001 * 109.47314 * 299.99760 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2682 2.0698 -1.2688 5 6 3.6914 1.8268 -1.7004 6 1 4.3447 1.2203 -1.0905 7 6 4.1597 2.3785 -2.8741 8 7 5.4018 2.1668 -3.2505 9 14 3.0300 3.4279 -3.9287 10 1 3.1386 4.8481 -3.5084 11 1 3.4256 3.3019 -5.3545 12 1 1.6281 2.9679 -3.7614 13 6 2.2430 2.0165 1.1672 14 8 2.6531 3.1611 1.1671 15 7 2.0131 1.3831 2.3344 16 6 2.3458 1.9998 3.5394 17 6 2.2043 1.3008 4.7330 18 6 2.5430 1.9231 5.9213 19 6 3.0031 3.2323 5.8758 20 6 3.1139 3.8678 4.6552 21 6 3.6132 5.2885 4.5989 22 6 4.7936 5.3694 3.6656 23 8 5.1893 4.3754 3.1041 24 8 5.4063 6.5458 3.4588 25 6 6.5368 6.5490 2.5476 26 7 2.7881 3.2472 3.5373 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5875 1.6879 -2.0296 33 1 2.1054 3.1398 -1.1396 34 1 5.7314 2.5553 -4.0760 35 1 1.6162 0.4979 2.3358 36 1 1.8392 0.2844 4.7321 37 1 2.4469 1.4039 6.8635 38 1 3.2721 3.7480 6.7858 39 1 2.8177 5.9391 4.2357 40 1 3.9161 5.6070 5.5963 41 1 6.2114 6.2113 1.5637 42 1 6.9381 7.5595 2.4702 43 1 7.3093 5.8788 2.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616835348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:13 Heat of formation + Delta-G solvation = -46.649357 kcal Electronic energy + Delta-G solvation = -27636.929258 eV Core-core repulsion = 23683.990275 eV Total energy + Delta-G solvation = -3952.938983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76087 -39.97759 -39.00160 -36.20943 -35.48794 -34.65211 -32.85437 -32.55492 -31.29919 -30.31190 -28.84078 -27.48706 -26.83299 -23.77717 -22.96376 -22.86226 -21.86296 -20.68498 -19.33754 -17.83692 -17.38109 -17.00853 -16.77857 -16.46987 -16.26857 -15.98568 -15.39038 -14.98266 -14.92100 -14.14618 -13.86931 -13.78985 -13.54640 -13.35574 -13.28831 -12.97385 -12.86828 -12.48861 -12.24896 -12.09776 -11.96981 -11.88056 -11.77442 -11.40827 -10.98570 -10.79440 -10.49815 -10.46076 -10.43636 -10.13485 -10.05222 -9.68147 -9.60485 -9.42966 -8.63293 -8.51750 -8.06493 -7.59195 -6.01322 -3.99031 1.16252 1.48419 2.59104 2.92318 2.98042 3.33600 3.39331 3.41458 3.77289 4.09684 4.26372 4.43817 4.45978 4.68193 5.01758 5.07067 5.10370 5.18194 5.22740 5.30879 5.33045 5.36164 5.42340 5.46126 5.50976 5.60212 5.67514 5.80912 5.87761 5.97245 6.13374 6.19647 6.36654 6.41522 6.59317 6.67981 6.91630 7.01176 7.28369 7.49537 7.69249 8.10869 8.21030 8.55820 8.63238 9.03577 9.34142 9.59515 11.12431 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.005027 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.569919 B = 5568.137828 C = 7800.330170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.606 5.606 4 C 0.234 3.766 5 C -0.525 4.525 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.689 3.311 14 O -0.514 6.514 15 N -0.675 5.675 16 C 0.397 3.603 17 C -0.219 4.219 18 C -0.046 4.046 19 C -0.210 4.210 20 C 0.164 3.836 21 C -0.056 4.056 22 C 0.455 3.545 23 O -0.464 6.464 24 O -0.369 6.369 25 C 0.038 3.962 26 N -0.445 5.445 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 0.780 19.241 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.343 5.343 4 C 0.113 3.887 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.389 3.611 14 O -0.383 6.383 15 N -0.324 5.324 16 C 0.163 3.837 17 C -0.243 4.243 18 C -0.072 4.072 19 C -0.232 4.232 20 C 0.024 3.976 21 C -0.094 4.094 22 C 0.294 3.706 23 O -0.347 6.347 24 O -0.287 6.287 25 C -0.056 4.056 26 N -0.160 5.160 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.210 1.784 17.883 19.364 hybrid contribution -0.519 -0.601 -0.100 0.800 sum -7.729 1.183 17.784 19.427 Atomic orbital electron populations 1.22274 0.96771 1.01553 1.02409 1.21387 0.93319 0.84283 1.02861 1.47283 1.68101 1.13295 1.05596 1.19545 0.97102 0.93187 0.78854 1.21375 0.95500 1.32625 1.06867 0.90841 1.24842 0.94958 0.95825 0.97379 1.69905 1.15039 1.45198 1.23604 0.86864 0.81443 0.81722 0.79704 1.19967 1.21146 1.19082 1.15981 0.79973 0.85241 0.79861 1.91032 1.47365 1.15469 1.84453 1.43136 1.64805 1.20814 1.03660 1.18175 0.91504 0.89056 0.84939 1.21401 1.09316 1.01655 0.91924 1.21183 0.94390 0.94017 0.97627 1.21665 1.06767 0.96422 0.98298 1.20354 0.94513 0.94471 0.88274 1.20139 0.95201 0.94321 0.99765 1.23194 0.84134 0.81529 0.81699 1.90820 1.62426 1.36518 1.44936 1.86412 1.44947 1.35495 1.61843 1.23222 0.86285 1.02945 0.93164 1.67457 1.11442 1.07935 1.29120 0.91916 0.93135 0.91957 0.89329 0.92264 0.95199 0.94576 0.92690 0.75526 0.84940 0.84646 0.84963 0.86042 0.86419 0.91341 0.88470 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.68 5.84 -4.04 -0.02 1.65 16 3 N -0.61 -13.08 2.46 -180.80 -0.44 -13.52 16 4 C 0.23 5.95 4.23 -5.19 -0.02 5.92 16 5 C -0.52 -15.71 9.94 -34.44 -0.34 -16.05 16 6 H 0.07 2.44 8.06 -52.48 -0.42 2.02 16 7 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -28.62 13.96 55.43 0.77 -27.84 16 9 Si 0.88 22.22 27.47 -169.99 -4.67 17.56 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.69 15.52 8.24 -86.92 -0.72 14.80 16 14 O -0.51 -14.02 14.18 5.29 0.08 -13.94 16 15 N -0.67 -11.70 5.22 -15.81 -0.08 -11.79 16 16 C 0.40 6.78 7.42 -154.71 -1.15 5.63 16 17 C -0.22 -2.69 9.94 -39.24 -0.39 -3.08 16 18 C -0.05 -0.48 10.17 -39.31 -0.40 -0.88 16 19 C -0.21 -2.36 9.70 -39.42 -0.38 -2.74 16 20 C 0.16 2.47 5.76 -82.61 -0.48 1.99 16 21 C -0.06 -0.71 6.21 -29.03 -0.18 -0.89 16 22 C 0.45 7.73 7.89 36.01 0.28 8.01 16 23 O -0.46 -10.29 15.08 -18.75 -0.28 -10.57 16 24 O -0.37 -5.57 10.57 -39.27 -0.41 -5.98 16 25 C 0.04 0.52 10.56 101.05 1.07 1.58 16 26 N -0.45 -8.62 6.75 -8.60 -0.06 -8.67 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 31 H 0.06 0.78 6.46 -51.93 -0.34 0.45 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 34 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 35 H 0.41 5.36 6.51 -40.82 -0.27 5.09 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 1.01 7.94 -52.49 -0.42 0.59 16 39 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.12 0.93 7.86 -51.93 -0.41 0.52 16 41 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -41.44 368.33 -7.96 -49.40 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.97 Total: 3.56 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: -2.45 Total: 16.25 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.19 Total: -61.82 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.62 Total: -30.50 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -41.44 -7.96 -49.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616835348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.751 kcal (2) G-P(sol) polarization free energy of solvation -41.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds