Wall clock time and date at job start Tue Mar 31 2020 12:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47016 * 2 1 4 4 C 1.46504 * 119.99956 * 269.72488 * 3 2 1 5 5 C 1.50694 * 109.47171 * 270.27766 * 4 3 2 6 6 H 1.08008 * 120.00394 * 359.97438 * 5 4 3 7 7 C 1.37890 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31503 * 119.99974 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99551 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46977 * 89.99968 * 9 7 5 11 11 H 1.48499 * 109.46890 * 209.99944 * 9 7 5 12 12 H 1.48496 * 109.47118 * 329.99757 * 9 7 5 13 13 C 1.34773 * 120.00042 * 90.00566 * 3 2 1 14 14 O 1.21581 * 119.99805 * 179.72368 * 13 3 2 15 15 N 1.34774 * 120.00127 * 359.71779 * 13 3 2 16 16 C 1.39397 * 120.00335 * 174.86817 * 15 13 3 17 17 C 1.39043 * 119.69818 * 185.05099 * 16 15 13 18 18 C 1.38346 * 119.09926 * 179.75507 * 17 16 15 19 19 C 1.38851 * 118.49590 * 0.51612 * 18 17 16 20 20 C 1.38058 * 119.31153 * 359.72457 * 19 18 17 21 21 C 1.50700 * 119.57389 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.46929 * 125.02292 * 21 20 19 23 23 O 1.20825 * 120.00548 * 359.97438 * 22 21 20 24 24 O 1.34235 * 119.99790 * 180.02562 * 22 21 20 25 25 C 1.45200 * 116.99767 * 179.97438 * 24 22 21 26 26 N 1.31942 * 120.84961 * 0.02562 * 20 19 18 27 27 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46623 * 300.00102 * 1 2 3 29 29 H 1.09000 * 109.47432 * 59.99752 * 1 2 3 30 30 H 1.09001 * 109.46763 * 240.00432 * 2 1 3 31 31 H 1.09000 * 109.47432 * 120.00248 * 2 1 3 32 32 H 1.09003 * 109.46877 * 30.27923 * 4 3 2 33 33 H 1.09002 * 109.46862 * 150.27521 * 4 3 2 34 34 H 0.97006 * 120.00013 * 180.02562 * 8 7 5 35 35 H 0.97010 * 119.99616 * 354.87655 * 15 13 3 36 36 H 1.07998 * 120.45096 * 0.02562 * 17 16 15 37 37 H 1.08004 * 120.75372 * 180.21789 * 18 17 16 38 38 H 1.07996 * 120.34173 * 179.75281 * 19 18 17 39 39 H 1.08998 * 109.47240 * 245.01860 * 21 20 19 40 40 H 1.08997 * 109.47213 * 5.02406 * 21 20 19 41 41 H 1.08999 * 109.47386 * 59.99979 * 25 24 22 42 42 H 1.09001 * 109.46789 * 179.97438 * 25 24 22 43 43 H 1.09001 * 109.47314 * 299.99760 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2682 2.0698 -1.2688 5 6 3.6914 1.8268 -1.7004 6 1 4.3447 1.2203 -1.0905 7 6 4.1597 2.3785 -2.8741 8 7 5.4018 2.1668 -3.2505 9 14 3.0300 3.4279 -3.9287 10 1 3.1386 4.8481 -3.5084 11 1 3.4256 3.3019 -5.3545 12 1 1.6281 2.9679 -3.7614 13 6 2.2430 2.0165 1.1672 14 8 2.6531 3.1611 1.1671 15 7 2.0131 1.3831 2.3344 16 6 2.3458 1.9998 3.5394 17 6 2.2043 1.3008 4.7330 18 6 2.5430 1.9231 5.9213 19 6 3.0031 3.2323 5.8758 20 6 3.1139 3.8678 4.6552 21 6 3.6132 5.2885 4.5989 22 6 4.7936 5.3694 3.6656 23 8 5.1893 4.3754 3.1041 24 8 5.4063 6.5458 3.4588 25 6 6.5368 6.5490 2.5476 26 7 2.7881 3.2472 3.5373 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5875 1.6879 -2.0296 33 1 2.1054 3.1398 -1.1396 34 1 5.7314 2.5553 -4.0760 35 1 1.6162 0.4979 2.3358 36 1 1.8392 0.2844 4.7321 37 1 2.4469 1.4039 6.8635 38 1 3.2721 3.7480 6.7858 39 1 2.8177 5.9391 4.2357 40 1 3.9161 5.6070 5.5963 41 1 6.2114 6.2113 1.5637 42 1 6.9381 7.5595 2.4702 43 1 7.3093 5.8788 2.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616835348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:12 Heat of formation + Delta-G solvation = -76.788988 kcal Electronic energy + Delta-G solvation = -27638.236210 eV Core-core repulsion = 23683.990275 eV Total energy + Delta-G solvation = -3954.245935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97925 -41.36242 -40.35463 -37.54792 -37.06644 -36.13390 -34.81205 -33.79574 -32.50887 -31.84975 -30.11390 -29.19956 -27.97930 -25.24481 -24.43246 -23.97989 -23.37765 -21.91690 -20.81699 -19.26058 -19.12670 -18.67075 -18.30747 -17.67377 -17.54847 -16.93462 -16.70876 -16.61314 -16.39110 -15.92187 -15.25355 -14.98432 -14.81828 -14.78948 -14.54080 -14.44369 -14.21340 -13.83257 -13.73358 -13.46527 -13.19724 -13.13550 -13.00527 -12.81536 -12.63272 -12.44753 -12.12752 -11.99978 -11.81610 -11.77832 -11.68628 -11.46681 -11.20509 -10.85697 -10.64413 -9.90334 -9.52177 -9.04826 -8.36278 -6.41065 0.15991 0.54393 1.27739 1.29247 1.33887 1.41914 1.59740 1.79724 2.28344 2.29859 2.84290 2.98222 3.05994 3.31247 3.83436 3.96369 3.99936 4.11345 4.22243 4.26330 4.27303 4.33205 4.37410 4.45535 4.49476 4.55701 4.62379 4.72266 4.80634 4.82098 4.94712 4.95629 5.08187 5.30512 5.33448 5.39183 5.44162 5.45547 5.59958 5.86800 5.96737 6.25230 6.59320 6.82397 6.86560 7.19920 7.36582 7.75335 8.81608 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.005027 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.569919 B = 5568.137828 C = 7800.330170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.615 5.615 4 C 0.247 3.753 5 C -0.535 4.535 6 H 0.019 0.981 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.234 1.234 13 C 0.683 3.317 14 O -0.576 6.576 15 N -0.662 5.662 16 C 0.346 3.654 17 C -0.203 4.203 18 C -0.042 4.042 19 C -0.188 4.188 20 C 0.126 3.874 21 C -0.051 4.051 22 C 0.450 3.550 23 O -0.528 6.528 24 O -0.362 6.362 25 C 0.034 3.966 26 N -0.506 5.506 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.268 0.732 35 H 0.425 0.575 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.129 0.871 40 H 0.173 0.827 41 H 0.032 0.968 42 H 0.141 0.859 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 0.379 22.163 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.351 5.351 4 C 0.124 3.876 5 C -0.574 4.574 6 H 0.038 0.962 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.774 3.226 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.157 1.157 13 C 0.384 3.616 14 O -0.450 6.450 15 N -0.314 5.314 16 C 0.115 3.885 17 C -0.226 4.226 18 C -0.068 4.068 19 C -0.209 4.209 20 C -0.013 4.013 21 C -0.089 4.089 22 C 0.293 3.707 23 O -0.415 6.415 24 O -0.279 6.279 25 C -0.059 4.059 26 N -0.220 5.220 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.266 0.734 36 H 0.185 0.815 37 H 0.203 0.797 38 H 0.196 0.804 39 H 0.147 0.853 40 H 0.190 0.810 41 H 0.051 0.949 42 H 0.159 0.841 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.792 1.334 20.885 23.105 hybrid contribution 0.397 -0.509 -0.813 1.039 sum -9.395 0.825 20.072 22.177 Atomic orbital electron populations 1.22168 0.93548 1.03859 1.02105 1.21736 0.95853 0.81222 1.03672 1.47285 1.68273 1.15261 1.04277 1.19151 0.94549 0.92560 0.81321 1.21585 0.97297 1.32001 1.06476 0.96248 1.25892 0.96799 0.97160 0.98988 1.70068 1.17435 1.46718 1.24583 0.85674 0.80531 0.78701 0.77743 1.20582 1.19505 1.15740 1.16271 0.79327 0.84838 0.81160 1.90976 1.50067 1.18254 1.85682 1.42743 1.64872 1.21234 1.02525 1.18665 0.94351 0.89715 0.85815 1.21808 1.07440 1.02778 0.90620 1.21834 0.92470 0.93758 0.98719 1.22196 1.03695 0.96714 0.98271 1.20859 0.95963 0.95585 0.88855 1.20429 0.93193 0.94006 1.01238 1.24267 0.84494 0.80826 0.81115 1.90799 1.64517 1.38587 1.47616 1.86433 1.45103 1.34815 1.61595 1.23383 0.85899 1.05484 0.91157 1.67228 1.12840 1.09800 1.32179 0.88169 0.92518 0.93186 0.90406 0.89677 0.92722 0.96879 0.92282 0.73440 0.81483 0.79704 0.80448 0.85293 0.81004 0.94917 0.84095 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.10 3.06 5.84 86.38 0.50 3.56 16 3 N -0.61 -27.51 2.46 -844.20 -2.07 -29.58 16 4 C 0.25 13.01 4.23 85.63 0.36 13.37 16 5 C -0.53 -33.93 9.94 25.60 0.25 -33.68 16 6 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 7 C 0.01 0.57 5.47 84.66 0.46 1.03 16 8 N -0.95 -63.26 13.96 21.45 0.30 -62.96 16 9 Si 0.95 46.99 27.47 68.60 1.88 48.87 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.23 -10.31 6.54 99.48 0.65 -9.66 16 13 C 0.68 32.41 8.24 179.06 1.47 33.88 16 14 O -0.58 -33.80 14.18 -3.97 -0.06 -33.85 16 15 N -0.66 -23.39 5.22 -322.21 -1.68 -25.07 16 16 C 0.35 11.87 7.42 132.92 0.99 12.86 16 17 C -0.20 -4.42 9.94 22.49 0.22 -4.19 16 18 C -0.04 -0.68 10.17 22.44 0.23 -0.46 16 19 C -0.19 -3.50 9.70 22.37 0.22 -3.28 16 20 C 0.13 3.69 5.76 42.50 0.24 3.94 16 21 C -0.05 -1.24 6.21 29.10 0.18 -1.06 16 22 C 0.45 15.89 7.89 71.24 0.56 16.45 16 23 O -0.53 -25.17 15.08 21.97 0.33 -24.84 16 24 O -0.36 -11.17 10.57 -51.47 -0.54 -11.71 16 25 C 0.03 0.99 10.56 113.37 1.20 2.18 16 26 N -0.51 -20.20 6.75 -181.13 -1.22 -21.43 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 2.59 8.07 -2.39 -0.02 2.58 16 31 H 0.09 2.18 6.46 -2.39 -0.02 2.16 16 32 H 0.05 2.59 7.13 -2.39 -0.02 2.58 16 33 H 0.01 0.75 6.85 -2.39 -0.02 0.73 16 34 H 0.27 16.54 8.31 -92.70 -0.77 15.77 16 35 H 0.42 10.84 6.51 -92.70 -0.60 10.24 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.18 1.61 7.94 -2.91 -0.02 1.59 16 39 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.17 2.08 7.86 -2.39 -0.02 2.07 16 41 H 0.03 1.16 8.13 -2.39 -0.02 1.14 16 42 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 Total: -1.00 -103.71 368.33 4.95 -98.76 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.37 Total: 20.12 kcal Atomic # 6 Polarization: 34.06 SS G_CDS: 7.64 Total: 41.69 kcal Atomic # 7 Polarization: -134.36 SS G_CDS: -4.68 Total: -139.04 kcal Atomic # 8 Polarization: -70.14 SS G_CDS: -0.27 Total: -70.40 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.88 Total: 48.87 kcal Total: -103.71 4.95 -98.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616835348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.973 kcal (2) G-P(sol) polarization free energy of solvation -103.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds