Wall clock time and date at job start Tue Mar 31 2020 13:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35754 * 116.99938 * 2 1 4 4 C 1.38714 * 119.58037 * 180.02562 * 3 2 1 5 5 C 1.38576 * 119.29070 * 179.79387 * 4 3 2 6 6 C 1.39034 * 118.48279 * 0.42415 * 5 4 3 7 7 N 1.40396 * 120.43734 * 179.80465 * 6 5 4 8 8 C 1.34774 * 120.00505 * 17.74571 * 7 6 5 9 9 O 1.21604 * 119.99513 * 5.18167 * 8 7 6 10 10 N 1.34772 * 120.00504 * 185.18418 * 8 7 6 11 11 C 1.46494 * 120.00394 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47416 * 184.40370 * 11 10 8 13 13 C 1.50701 * 115.55159 * 302.91246 * 12 11 10 14 14 H 1.07998 * 120.00217 * 99.49909 * 13 12 11 15 15 C 1.37881 * 119.99627 * 279.22477 * 13 12 11 16 16 N 1.31511 * 120.00336 * 355.51732 * 15 13 12 17 17 Si 1.86800 * 119.99812 * 175.51509 * 15 13 12 18 18 H 1.48501 * 109.47399 * 90.00049 * 17 15 13 19 19 H 1.48498 * 109.47191 * 210.00254 * 17 15 13 20 20 H 1.48507 * 109.47093 * 330.00179 * 17 15 13 21 21 C 1.53001 * 117.51935 * 88.61127 * 12 11 10 22 22 C 1.52999 * 117.49863 * 157.24171 * 12 11 10 23 23 C 1.39298 * 119.11982 * 359.53556 * 6 5 4 24 24 O 1.35744 * 119.68955 * 180.25199 * 23 6 5 25 25 C 1.42906 * 117.00048 * 180.02562 * 24 23 6 26 26 N 1.32269 * 120.62433 * 0.26783 * 23 6 5 27 27 H 1.09007 * 109.47288 * 299.99755 * 1 2 3 28 28 H 1.09004 * 109.47425 * 59.99749 * 1 2 3 29 29 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.35849 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.75985 * 180.21171 * 5 4 3 32 32 H 0.97009 * 119.99643 * 197.74595 * 7 6 5 33 33 H 0.97002 * 119.99848 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47075 * 64.40204 * 11 10 8 35 35 H 1.08997 * 109.47253 * 304.40558 * 11 10 8 36 36 H 0.96996 * 120.00268 * 185.00888 * 16 15 13 37 37 H 1.09001 * 117.49995 * 214.97176 * 21 12 11 38 38 H 1.08998 * 117.49597 * 359.97438 * 21 12 11 39 39 H 1.08992 * 117.50247 * 359.97438 * 22 12 11 40 40 H 1.09009 * 117.49781 * 144.97544 * 22 12 11 41 41 H 1.09005 * 109.47099 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46497 * 299.99322 * 25 24 23 43 43 H 1.08989 * 109.47301 * 59.99185 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4310 1.2720 -0.0005 5 6 4.0539 2.5099 -0.0049 6 6 3.2603 3.6515 0.0005 7 7 3.8482 4.9264 0.0005 8 6 5.1384 5.0737 -0.3602 9 8 5.7664 4.1187 -0.7754 10 7 5.7327 6.2792 -0.2606 11 6 7.1353 6.4391 -0.6521 12 6 7.5925 7.8655 -0.3404 13 6 6.7859 8.9623 -0.9865 14 1 6.0272 9.4807 -0.4190 15 6 7.0206 9.3079 -2.3005 16 7 8.0059 8.7428 -2.9633 17 14 5.9388 10.5790 -3.1394 18 1 6.5184 11.9316 -2.9399 19 1 5.8626 10.2825 -4.5925 20 1 4.5753 10.5333 -2.5527 21 6 8.1643 8.1360 1.0527 22 6 9.0933 8.1033 -0.1625 23 6 1.8742 3.5135 0.0001 24 8 1.0883 4.6203 0.0001 25 6 -0.3255 4.4122 0.0003 26 7 1.3165 2.3141 0.0001 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0183 0.3656 -0.0014 31 1 5.1312 2.5862 -0.0088 32 1 3.3257 5.7015 0.2602 33 1 5.2317 7.0410 0.0703 34 1 7.2381 6.2499 -1.7207 35 1 7.7505 5.7309 -0.0971 36 1 8.2171 9.0374 -3.8630 37 1 7.9571 9.1074 1.5018 38 1 8.2144 7.2978 1.7476 39 1 9.7550 7.2435 -0.2671 40 1 9.4975 9.0530 -0.5132 41 1 -0.8347 5.3760 -0.0001 42 1 -0.6101 3.8509 -0.8897 43 1 -0.6100 3.8509 0.8902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619535798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:15 Heat of formation + Delta-G solvation = -29.062504 kcal Electronic energy + Delta-G solvation = -26848.257553 eV Core-core repulsion = 22896.081193 eV Total energy + Delta-G solvation = -3952.176360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18271 -39.67175 -38.91043 -37.25595 -36.68390 -34.53417 -33.50629 -32.02980 -31.77774 -29.61783 -27.99389 -26.78599 -26.02428 -25.14008 -23.20555 -22.97411 -21.20980 -20.43974 -19.47281 -19.04845 -18.36004 -17.48784 -17.37448 -16.49690 -16.05509 -15.84545 -15.64567 -15.20045 -15.01537 -14.66377 -14.59587 -14.10277 -13.78660 -13.53547 -13.31356 -13.17581 -12.99669 -12.71198 -12.18866 -12.08705 -11.83602 -11.74008 -11.63097 -11.08081 -11.03271 -10.94447 -10.56146 -10.42512 -10.26838 -10.23688 -9.67510 -9.51129 -9.24256 -9.07369 -8.56452 -8.38365 -8.12566 -7.48201 -6.11475 -4.21406 1.15845 1.27540 2.81816 2.89369 3.11779 3.23091 3.31852 3.32346 3.44248 3.87831 4.17098 4.31548 4.59424 4.84544 5.03538 5.07713 5.09486 5.13483 5.15839 5.20931 5.32203 5.33744 5.40340 5.49670 5.73841 5.96077 6.00182 6.28821 6.33853 6.44550 6.52267 6.67823 6.69991 6.77924 6.80619 7.07641 7.19259 7.29554 7.32052 7.36866 7.51791 7.64696 7.77736 8.29605 8.45859 8.80053 8.96930 9.46289 10.95921 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003009 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.846470 B = 9302.235860 C =10184.421978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.307 6.307 3 C 0.321 3.679 4 C -0.197 4.197 5 C -0.039 4.039 6 C 0.090 3.910 7 N -0.674 5.674 8 C 0.698 3.302 9 O -0.589 6.589 10 N -0.708 5.708 11 C 0.180 3.820 12 C 0.026 3.974 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.872 5.872 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.210 4.210 22 C -0.146 4.146 23 C 0.319 3.681 24 O -0.307 6.307 25 C 0.045 3.955 26 N -0.572 5.572 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.186 0.814 32 H 0.412 0.588 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -11.730 7.326 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.143 3.857 4 C -0.219 4.219 5 C -0.066 4.066 6 C -0.009 4.009 7 N -0.321 5.321 8 C 0.398 3.602 9 O -0.469 6.469 10 N -0.359 5.359 11 C 0.057 3.943 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.508 5.508 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.247 4.247 22 C -0.185 4.185 23 C 0.138 3.862 24 O -0.214 6.214 25 C -0.050 4.050 26 N -0.310 5.310 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.163 0.837 31 H 0.203 0.797 32 H 0.247 0.753 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.421 -12.596 6.730 20.296 hybrid contribution -0.754 1.565 -0.382 1.779 sum -15.175 -11.031 6.348 19.806 Atomic orbital electron populations 1.22790 0.77777 1.02666 1.02121 1.86264 1.22436 1.24357 1.88401 1.19316 0.89127 0.83099 0.94157 1.20941 0.91127 0.99474 1.10327 1.22093 1.03273 0.88341 0.92906 1.17429 0.88099 0.86603 1.08789 1.42448 1.11682 1.07499 1.70493 1.15999 0.80576 0.84687 0.78896 1.90736 1.64170 1.38883 1.53133 1.45183 1.14558 1.08425 1.67767 1.20881 0.77427 0.96232 0.99781 1.19029 0.93439 0.92167 0.92874 1.20337 1.19936 1.18031 0.95751 0.92163 1.24984 0.95065 0.95808 0.97097 1.69970 1.28061 1.40565 1.12201 0.86635 0.81153 0.81529 0.78952 1.20694 1.21187 1.19773 1.23013 1.09145 1.00590 0.91962 1.22490 0.94199 1.01294 1.00477 1.18860 0.86791 0.84425 0.96166 1.86212 1.19518 1.27392 1.88327 1.22807 0.77386 1.02724 1.02126 1.66686 1.40801 0.97914 1.25642 0.92617 0.92582 0.88846 0.83692 0.79719 0.75277 0.76402 0.91244 0.94095 0.92807 0.90420 0.91598 0.91688 0.89687 0.88583 0.92495 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.64 10.48 -18.97 -0.20 -3.84 16 3 C 0.32 4.29 7.48 -17.16 -0.13 4.16 16 4 C -0.20 -2.61 10.03 -39.28 -0.39 -3.00 16 5 C -0.04 -0.58 8.91 -39.16 -0.35 -0.93 16 6 C 0.09 1.38 6.57 -83.24 -0.55 0.83 16 7 N -0.67 -10.36 5.36 -13.96 -0.07 -10.43 16 8 C 0.70 12.95 8.44 -86.92 -0.73 12.21 16 9 O -0.59 -12.39 13.20 5.27 0.07 -12.32 16 10 N -0.71 -13.42 5.43 -65.23 -0.35 -13.78 16 11 C 0.18 3.94 5.54 -4.05 -0.02 3.92 16 12 C 0.03 0.58 1.51 -155.66 -0.23 0.35 16 13 C -0.50 -12.52 8.19 -34.44 -0.28 -12.80 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.08 1.94 5.44 -17.82 -0.10 1.85 16 16 N -0.87 -23.74 12.86 55.43 0.71 -23.02 16 17 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 21 C -0.21 -4.24 9.93 -26.73 -0.27 -4.51 16 22 C -0.15 -3.25 9.43 -26.73 -0.25 -3.50 16 23 C 0.32 4.50 7.50 -16.97 -0.13 4.38 16 24 O -0.31 -3.88 9.83 -18.94 -0.19 -4.07 16 25 C 0.04 0.41 10.38 101.05 1.05 1.46 16 26 N -0.57 -7.70 8.06 -13.26 -0.11 -7.81 16 27 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.19 3.02 5.39 -52.49 -0.28 2.74 16 32 H 0.41 5.43 8.25 -40.82 -0.34 5.09 16 33 H 0.40 7.03 8.07 -40.82 -0.33 6.70 16 34 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.06 0.48 8.10 -51.94 -0.42 0.06 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -29.51 369.22 -6.91 -36.42 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.98 Total: 12.32 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.33 Total: 5.80 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.18 Total: -55.04 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.32 Total: -20.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.51 -6.91 -36.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619535798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.360 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds