Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35754 * 116.99938 * 2 1 4 4 C 1.38714 * 119.58037 * 180.02562 * 3 2 1 5 5 C 1.38576 * 119.29070 * 179.79387 * 4 3 2 6 6 C 1.39034 * 118.48279 * 0.42415 * 5 4 3 7 7 N 1.40396 * 120.43734 * 179.80465 * 6 5 4 8 8 C 1.34774 * 120.00505 * 17.74571 * 7 6 5 9 9 O 1.21604 * 119.99513 * 5.18167 * 8 7 6 10 10 N 1.34772 * 120.00504 * 185.18418 * 8 7 6 11 11 C 1.46494 * 120.00394 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47416 * 184.40370 * 11 10 8 13 13 C 1.50701 * 115.55159 * 302.91246 * 12 11 10 14 14 H 1.07998 * 120.00217 * 99.49909 * 13 12 11 15 15 C 1.37881 * 119.99627 * 279.22477 * 13 12 11 16 16 N 1.31511 * 120.00336 * 355.51732 * 15 13 12 17 17 Si 1.86800 * 119.99812 * 175.51509 * 15 13 12 18 18 H 1.48501 * 109.47399 * 90.00049 * 17 15 13 19 19 H 1.48498 * 109.47191 * 210.00254 * 17 15 13 20 20 H 1.48507 * 109.47093 * 330.00179 * 17 15 13 21 21 C 1.53001 * 117.51935 * 88.61127 * 12 11 10 22 22 C 1.52999 * 117.49863 * 157.24171 * 12 11 10 23 23 C 1.39298 * 119.11982 * 359.53556 * 6 5 4 24 24 O 1.35744 * 119.68955 * 180.25199 * 23 6 5 25 25 C 1.42906 * 117.00048 * 180.02562 * 24 23 6 26 26 N 1.32269 * 120.62433 * 0.26783 * 23 6 5 27 27 H 1.09007 * 109.47288 * 299.99755 * 1 2 3 28 28 H 1.09004 * 109.47425 * 59.99749 * 1 2 3 29 29 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.35849 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.75985 * 180.21171 * 5 4 3 32 32 H 0.97009 * 119.99643 * 197.74595 * 7 6 5 33 33 H 0.97002 * 119.99848 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47075 * 64.40204 * 11 10 8 35 35 H 1.08997 * 109.47253 * 304.40558 * 11 10 8 36 36 H 0.96996 * 120.00268 * 185.00888 * 16 15 13 37 37 H 1.09001 * 117.49995 * 214.97176 * 21 12 11 38 38 H 1.08998 * 117.49597 * 359.97438 * 21 12 11 39 39 H 1.08992 * 117.50247 * 359.97438 * 22 12 11 40 40 H 1.09009 * 117.49781 * 144.97544 * 22 12 11 41 41 H 1.09005 * 109.47099 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46497 * 299.99322 * 25 24 23 43 43 H 1.08989 * 109.47301 * 59.99185 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4310 1.2720 -0.0005 5 6 4.0539 2.5099 -0.0049 6 6 3.2603 3.6515 0.0005 7 7 3.8482 4.9264 0.0005 8 6 5.1384 5.0737 -0.3602 9 8 5.7664 4.1187 -0.7754 10 7 5.7327 6.2792 -0.2606 11 6 7.1353 6.4391 -0.6521 12 6 7.5925 7.8655 -0.3404 13 6 6.7859 8.9623 -0.9865 14 1 6.0272 9.4807 -0.4190 15 6 7.0206 9.3079 -2.3005 16 7 8.0059 8.7428 -2.9633 17 14 5.9388 10.5790 -3.1394 18 1 6.5184 11.9316 -2.9399 19 1 5.8626 10.2825 -4.5925 20 1 4.5753 10.5333 -2.5527 21 6 8.1643 8.1360 1.0527 22 6 9.0933 8.1033 -0.1625 23 6 1.8742 3.5135 0.0001 24 8 1.0883 4.6203 0.0001 25 6 -0.3255 4.4122 0.0003 26 7 1.3165 2.3141 0.0001 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0183 0.3656 -0.0014 31 1 5.1312 2.5862 -0.0088 32 1 3.3257 5.7015 0.2602 33 1 5.2317 7.0410 0.0703 34 1 7.2381 6.2499 -1.7207 35 1 7.7505 5.7309 -0.0971 36 1 8.2171 9.0374 -3.8630 37 1 7.9571 9.1074 1.5018 38 1 8.2144 7.2978 1.7476 39 1 9.7550 7.2435 -0.2671 40 1 9.4975 9.0530 -0.5132 41 1 -0.8347 5.3760 -0.0001 42 1 -0.6101 3.8509 -0.8897 43 1 -0.6100 3.8509 0.8902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619535798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = -50.955181 kcal Electronic energy + Delta-G solvation = -26849.206891 eV Core-core repulsion = 22896.081193 eV Total energy + Delta-G solvation = -3953.125698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.29198 -41.00451 -39.87355 -38.68645 -37.98117 -35.82576 -35.07485 -33.96788 -32.87265 -30.70726 -28.78092 -28.11290 -27.41222 -26.79085 -24.26567 -24.10202 -22.90740 -21.87153 -21.22810 -20.11838 -19.51607 -18.83780 -18.51387 -17.81108 -17.45147 -16.90234 -16.72507 -16.50873 -16.37586 -16.11193 -15.96140 -15.68460 -15.05186 -14.72905 -14.56063 -14.35935 -14.27770 -14.03927 -13.72981 -13.45653 -12.93492 -12.90527 -12.81218 -12.63325 -12.59220 -12.35348 -12.12615 -11.98477 -11.53051 -11.38041 -11.33344 -10.92487 -10.88554 -10.45673 -10.41282 -10.08205 -9.80788 -8.62105 -8.07842 -6.21420 0.07805 0.16528 1.43046 1.46619 1.53589 1.55208 1.90893 2.06040 2.17535 2.43646 2.71731 3.12778 3.21161 3.27107 3.58649 3.79910 4.09476 4.26085 4.29107 4.42671 4.43962 4.45925 4.49324 4.57746 4.66254 4.71445 4.75481 4.76595 4.79848 4.89799 5.01832 5.05531 5.21819 5.32051 5.51741 5.56748 5.64340 5.72551 5.80728 5.82058 6.00887 6.31790 6.39231 6.59704 6.86052 7.06362 7.48291 7.51794 8.99242 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003009 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.846470 B = 9302.235860 C =10184.421978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C 0.322 3.678 4 C -0.198 4.198 5 C -0.046 4.046 6 C 0.064 3.936 7 N -0.659 5.659 8 C 0.698 3.302 9 O -0.617 6.617 10 N -0.705 5.705 11 C 0.198 3.802 12 C 0.004 3.996 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.946 3.054 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.178 4.178 22 C -0.157 4.157 23 C 0.323 3.677 24 O -0.315 6.315 25 C 0.039 3.961 26 N -0.569 5.569 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.422 0.578 33 H 0.409 0.591 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.258 0.742 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.056 0.944 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 -12.097 8.513 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.219 6.219 3 C 0.143 3.857 4 C -0.219 4.219 5 C -0.073 4.073 6 C -0.035 4.035 7 N -0.308 5.308 8 C 0.399 3.601 9 O -0.499 6.499 10 N -0.357 5.357 11 C 0.073 3.927 12 C 0.003 3.997 13 C -0.541 4.541 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.186 1.186 21 C -0.215 4.215 22 C -0.196 4.196 23 C 0.142 3.858 24 O -0.222 6.222 25 C -0.055 4.055 26 N -0.308 5.308 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.182 0.818 31 H 0.187 0.813 32 H 0.260 0.740 33 H 0.245 0.755 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.075 0.925 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.752 -12.958 7.951 22.622 hybrid contribution -0.176 1.573 -0.712 1.735 sum -16.928 -11.385 7.239 21.647 Atomic orbital electron populations 1.23075 0.75853 1.04764 1.02198 1.86273 1.24343 1.23366 1.87945 1.19503 0.89364 0.83643 0.93149 1.21088 0.91542 0.99495 1.09810 1.21965 1.02618 0.89255 0.93483 1.17573 0.88872 0.86309 1.10709 1.42174 1.10481 1.08263 1.69833 1.16046 0.81384 0.84017 0.78658 1.90730 1.65195 1.39680 1.54294 1.44955 1.13701 1.09004 1.68059 1.20462 0.79089 0.95849 0.97299 1.19069 0.93508 0.91983 0.95108 1.20658 1.19716 1.18001 0.95760 0.91682 1.25668 0.96084 0.97699 0.97961 1.70095 1.29802 1.42151 1.12276 0.85741 0.80164 0.79456 0.77407 1.20444 1.22109 1.18584 1.23002 1.05820 1.01707 0.90935 1.22421 0.94224 1.00539 1.02388 1.18879 0.86600 0.85030 0.95336 1.86211 1.21162 1.26866 1.87965 1.23087 0.75555 1.04521 1.02387 1.66766 1.40569 0.97737 1.25751 0.92309 0.92676 0.85842 0.81823 0.81342 0.74024 0.75488 0.95304 0.93707 0.93286 0.89752 0.89274 0.91039 0.91804 0.85933 0.92545 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.69 16 2 O -0.31 -6.75 10.48 -90.79 -0.95 -7.70 16 3 C 0.32 8.11 7.48 84.73 0.63 8.74 16 4 C -0.20 -5.06 10.03 22.46 0.23 -4.84 16 5 C -0.05 -1.38 8.91 22.54 0.20 -1.18 16 6 C 0.06 1.92 6.57 38.21 0.25 2.17 16 7 N -0.66 -19.97 5.36 -316.35 -1.69 -21.66 16 8 C 0.70 25.98 8.44 179.06 1.51 27.49 16 9 O -0.62 -26.48 13.20 -4.04 -0.05 -26.53 16 10 N -0.70 -26.60 5.43 -478.55 -2.60 -29.20 16 11 C 0.20 8.73 5.54 86.38 0.48 9.21 16 12 C 0.00 0.19 1.51 -52.93 -0.08 0.11 16 13 C -0.50 -24.86 8.19 25.60 0.21 -24.65 16 14 H 0.07 3.08 7.82 -2.91 -0.02 3.06 16 15 C 0.03 1.39 5.44 84.66 0.46 1.85 16 16 N -0.91 -50.38 12.86 21.45 0.28 -50.10 16 17 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 C -0.18 -6.86 9.93 30.60 0.30 -6.56 16 22 C -0.16 -6.99 9.43 30.59 0.29 -6.70 16 23 C 0.32 8.73 7.50 84.88 0.64 9.37 16 24 O -0.31 -7.41 9.83 -90.69 -0.89 -8.30 16 25 C 0.04 0.62 10.38 113.37 1.18 1.79 16 26 N -0.57 -14.43 8.06 -421.48 -3.40 -17.82 16 27 H 0.06 0.82 8.10 -2.38 -0.02 0.80 16 28 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.17 5.66 5.39 -2.91 -0.02 5.64 16 32 H 0.42 10.71 8.25 -92.70 -0.77 9.94 16 33 H 0.41 13.99 8.07 -92.71 -0.75 13.24 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 37 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.06 3.08 8.14 -2.38 -0.02 3.06 16 41 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 43 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -63.35 369.22 -0.27 -63.61 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.46 Total: 35.73 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.47 Total: 18.50 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -7.41 Total: -118.79 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.90 Total: -42.53 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -63.35 -0.27 -63.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619535798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.658 kcal (2) G-P(sol) polarization free energy of solvation -63.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds